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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   L13596; SV 1; linear; genomic DNA; STD; FUN; 1640 BP.
XX
AC   L13596;
XX
DT   06-APR-1993 (Rel. 35, Created)
DT   17-APR-2005 (Rel. 83, Last updated, Version 4)
XX
DE   Cochliobous carbonum beta-1,4 xylanase gene, complete cds.
XX
KW   beta-1,4-xylanase.
XX
OS   Cochliobolus carbonum
OC   Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes;
OC   Pleosporomycetidae; Pleosporales; Pleosporaceae; Cochliobolus.
XX
RN   [1]
RP   1-1640
RX   PUBMED; 8400376.
RA   Apel P.C., Panaccione D.G., Holden F.R., Walton J.D.;
RT   "Cloning and targeted gene disruption of XYL1, a beta 1,4-xylanase gene
RT   from the maize pathogen Cochliobolus carbonum";
RL   Mol. Plant Microbe Interact. 6(4):467-473(1993).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1640
FT                   /organism="Cochliobolus carbonum"
FT                   /strain="SB111"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:5017"
FT   CDS             join(226..485,540..945)
FT                   /codon_start=1
FT                   /product="beta-1,4-D-xylanase"
FT                   /db_xref="GOA:Q06562"
FT                   /db_xref="HSSP:1YNA"
FT                   /db_xref="InterPro:IPR018208"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q06562"
FT                   /protein_id="AAA33024.1"
FT                   /translation="MVSFTSIITAAVAATGALAAPATDVSLVARQNTPNGEGTHNGCFW
FT                   SWWSDGGARATYTNGAGGSYSVSWGSGGNLVGGKGWNPGTARTITYSGTYNYNGNSYLA
FT                   VYGWTRNPLVEYYVVENFGTYDPSSQSQNKGTVTSDGSSYKIAQSTRTNQPSIDGTRTF
FT                   QQYWSVRQNKRSSGSVNMKTHFDAWASKGMNLGQHYYQIVATEGYFSTGNAQITVNCP"
FT   sig_peptide     226..315
FT                   /note="putative"
FT   mat_peptide     join(316..485,540..942)
FT                   /product="beta-1,4-D-xylanase"
FT   intron          486..539
FT   polyA_site      1131
XX
SQ   Sequence 1640 BP; 397 A; 485 C; 343 G; 415 T; 0 other;
     gatctacacc ctagctaata ttactctagc agatggaata ccgctatcat gacgaggatg        60
     tttggcttgg ctgtgcacaa catccggtct tgtttccact cacatgccat gcgagggcga       120
     gtataaagct atcctgagtc ggctccatgg cacactttcc tcaccaacca tcaccacaac       180
     taccacttcc cttcgcttca ttcactcaac aacaacacca tcaaaatggt ttctttcacc       240
     tccatcatca ccgctgctgt tgcggctacc ggcgctcttg ccgcccccgc cactgatgtg       300
     tctctcgttg cccgtcagaa cacccccaac ggcgagggta cccacaacgg ctgcttctgg       360
     tcttggtggt ctgatggcgg tgcccgcgct acctacacca acggtgccgg tggtagctac       420
     agcgtaagct ggggaagcgg tggcaacctc gtcggtggaa agggatggaa cccaggaact       480
     gcccggtatg gactgtctta ctcaactctg atagactaca tacactaaca ttgatacagt       540
     accatcacct actctggtac ttacaactac aacggcaact cctaccttgc cgtctacggc       600
     tggacccgca acccccttgt cgagtactac gtcgttgaga acttcggcac ctacgacccc       660
     tcttcccagt cccagaacaa gggtaccgtc acctctgatg gatcttccta caagatcgct       720
     cagtcgaccc gtaccaacca gccctccatc gatggcacca ggacctttca gcagtattgg       780
     tctgttcgtc agaacaagcg ctcttccggc tccgtcaata tgaagactca ctttgacgcc       840
     tgggccagca agggcatgaa ccttggccag cactactacc agattgttgc caccgagggt       900
     tacttctcca ctggtaacgc ccagatcacc gtcaactgcc cataaattct tcaccacgaa       960
     gattaaacga atggccctga tggctctctg aacgactgga agatgacagg cgtggttttt      1020
     ggttacgtgc tgtgctagct gagctggtgg attcttttct gtatatacta tctttgtcaa      1080
     cccgatttgt ctatagctta acaatgtcaa aatcttggca ttactcacaa cgcgtctttt      1140
     catttttgcc tctaagtgaa ttgtgatggt cttgacgcat gatgacgtct actacgagca      1200
     ttctctccgg tgtccttcta atgataaaaa taaacaaact tcaatactcg caatatgaaa      1260
     ctccgcagta ccaaatttag atgtttgact tcacaatagg ctggcctatc tacgctgcct      1320
     catctattac atacaacggc atcgtaccag gagtcatcct cagtgcctcc tcaatgattc      1380
     ccaatgcaac atgcaactcc tcttccataa cagtaatcgg gtgtgcaatt ctgaaaacac      1440
     caccaagcga cgccattgtc gccaactgcg cccacaaacc cattttctcc atcttttgct      1500
     acacagcagc tccgaaatca ggagtcccaa ccgtaagaag gtgcagcctt cagtgttact      1560
     ggaggcaccg ctagtgtggt ggtgctttcc caatatagct tagtgcaaat agtaggtggg      1620
     tagcatctcg ctgagagctc                                                  1640
//
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