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EBI DbfetchID L04544; SV 1; linear; genomic DNA; STD; PRO; 5045 BP. XX AC L04544; XX DT 20-OCT-1992 (Rel. 33, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 7) XX DE Vibrio vulnificus beta-N-acetylhexosaminidase (hex) gene, complete cds. XX KW beta-N-acetylhexosaminidase; hairpin loop; hex gene. XX OS Vibrio vulnificus OC Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; OC Vibrio. XX RN [1] RP 1-5045 RX DOI; 10.1073/pnas.90.14.6751 RX PUBMED; 8341694. RA Somerville C.C., Colwell R.R.; RT "Sequence analysis of the beta-N-acetylhexosaminidase gene of Vibrio RT vulnificus: evidence for a common evolutionary origin of hexosaminidases"; RL Proc. Natl. Acad. Sci. U.S.A. 90(14):6751-6755(1993). XX FH Key Location/Qualifiers FH FT source 1..5045 FT /organism="Vibrio vulnificus" FT /mol_type="genomic DNA" FT /tissue_lib="ATCC 27562" FT /db_xref="taxon:672" FT -35_signal 617..623 FT /gene="hex" FT /note="putative" FT -10_signal 641..647 FT /gene="hex" FT /standard_name="Pribnow box" FT /note="putative" FT mRNA 653..>3242 FT /gene="hex" FT /note="putative" FT RBS 693..697 FT /gene="hex" FT /standard_name="Shine-Dalgarno sequence" FT /note="putative" FT CDS 702..3245 FT /codon_start=1 FT /transl_table=11 FT /gene="hex" FT /standard_name="hexosaminidase" FT /product="beta-N-acetylhexosaminidase" FT /function="hydrolysis of beta linkages between hexosamine FT residues" FT /EC_number="3.2.1.52" FT /db_xref="GOA:Q04786" FT /db_xref="HSSP:1QBA" FT /db_xref="InterPro:IPR015882" FT /db_xref="UniProtKB/Swiss-Prot:Q04786" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAA27527.1" FT /translation="MASDIDQKDVDYAAKNLKLTTSLVANKPKDCPPEAPWGACYRVEI FT NLENTGSKSLNENVEIYFSSIHRTLGSKSEEFKVEHINGDLHKITTTEKFKGLKGGKTK FT SFQVDFMNWIVSNSDFMPNYYVASEHLEGRNILNTVPIDAVHITEEVSGFTTGIKHTPN FT QLKRTANDLLPAATATTRYEQYSKVKDLGADAVSAHILPTPLETSVHEGSLNIAQGINI FT VSDALPADQVEALNFRFETLGVNTGTGVPVNVTIKADSSKKSGSYTLDVTSSGIRIVGV FT DKAGAFYGVQSLAGLVTVGKDTINQVSINDEPRLDYRGMHMDVSRNFHSKELVFRFLDQ FT MAAYKMNKFHFHLADDEGWRLEINGLPELTQVGAHRCHDVEQNKCMMPQLGSGAELPNN FT GSGYYTREDYKEILAYASARNIQVIPSMDMPGHSLAAVKSMEARYRKFMAEGDVVKAEM FT YLLSDPNDTTQYYSIQHYQDNTINPCMESSFVFMDKVIDEINKLHKEGGQPLTDYHIGA FT DETAGAWGDSPECRKMFVAPESGVKNAKDINGYFINRISHILDAKGLTLGAWNDGLSHK FT ALDASSLAGNPPKAWVWGTMFWGGVDQYNSFANKGYDVVVTPPDAYYFDMPYENDPEER FT GYYWATRFNDTKKVFSFMPENVPANVEWMTDRMGAKISATTGEKTHDFLGVQGALWSET FT IRTDAQVEYMVLPRMIAVAERGWHKASWEEEHKEGITYTSNVDGHEGTTHLNDNIATRD FT ADWAHFSNILGYKEMPKLDKAGITYRLPVLGAVIKNNILDVVTEFHGVAIQYSLDGKTW FT HKYDDTKKPQVSTKALVRSVSTNGRTGRAVEVLAK" FT stem_loop 3256..3296 FT /gene="hex" FT /function="possible involvment in termination of FT transcription" FT /note="putative" XX SQ Sequence 5045 BP; 1521 A; 1064 C; 1067 G; 1393 T; 0 other; gatcgataag gttttagaag agaaatagta tttttcagaa tcactagtaa gttagtagta 60 gcctgttatc caactgatgg gaagttttgc gacaaaacaa gtctgacaat ggcagcacaa 120 cttgtttctt tacatgaata aagtgagtat atccctcata aaaaggcttg gtgaatagcc 180 aaaccaatgc atgtatttat tgcttacacc tttaattagt ctaaatcgac gatttgatta 240 gctgacgatc ttttgatttc ggccgtaaac cgctaccgct cttaacgttt tttgcttgag 300 tagtgggttt tatttttgaa atacctctta tttttcaact agaaaaataa atgttaattg 360 catttatttg cagtgcaaat taatgttgac cgcaagtggt agtgtggcct gctttggaaa 420 attagttcct gtcagttaac catcacaatt aggaatactc atgtaaaaaa tgaatagtcg 480 atcggattgc aaccactctg acaagttaag ttctggggta acccaacatg tttatgtctc 540 agcgtgactt caagctatcg ttcacgatac cactaagctt ctaattctca gggtctcact 600 taagtatgag acctaattcc aatccaataa ggttactaaa tataatgggt atgaaactgt 660 ctctattggc aagcgcaatt gcactagcgt ctacgagtgt tatggctagc gatatcgacc 720 aaaaagatgt tgactatgct gctaagaatt taaaactaac gactagccta gttgctaaca 780 agcctaagga ctgtccgccg gaagcgcctt ggggcgcctg ctaccgtgtt gaaatcaacc 840 tagaaaacac aggtagcaaa tcgcttaacg agaatgtgga aatttatttt tcaagcattc 900 accgtaccct tggttccaag agcgaagagt ttaaagttga gcacatcaac ggcgatttgc 960 acaaaatcac aacaactgaa aaattcaaag gcttgaaggg cggcaaaacc aaatccttcc 1020 aagttgattt catgaactgg attgtgtcta actctgactt catgcctaac tactatgttg 1080 caagcgaaca cttggaaggt cggaacattc taaacacggt acctattgac gctgtccaca 1140 ttactgaaga agtatcaggc ttcacgacgg gtattaaaca tactccaaat caacttaagc 1200 gtactgcgaa tgacttattg ccagcagcta cagcaactac tcgttacgag caatactcta 1260 aagtgaaaga cctgggtgct gatgctgtat ctgcgcacat cctgccaact ccgctagaga 1320 cgtctgttca cgaaggttct ctaaatattg cacaaggtat caacatcgtt agcgatgctc 1380 tgcctgctga ccaagttgaa gcgctgaact ttcgcttcga aactttgggt gtaaatacgg 1440 gcacaggcgt tccagttaat gtaaccatta aagcagattc ttccaagaag tcaggttctt 1500 acactctgga tgtaactagc agtggtattc gaattgtcgg tgttgacaaa gcaggtgcgt 1560 tttacggtgt tcagtctcta gcaggtctgg taactgttgg taaggacacg attaatcagg 1620 tgtctatcaa tgatgaacct cgcctagatt accgtggcat gcatatggat gtttctcgta 1680 acttccactc taaagagctc gtattccgct tcctagacca aatggcagcg tacaagatga 1740 acaaattcca cttccatcta gcagatgatg aaggttggcg tttggaaatt aacggtcttc 1800 cagaactaac acaagttggt gctcaccgtt gccatgacgt agaacaaaac aagtgtatga 1860 tgcctcagtt aggctcgggt gctgaactac caaataacgg ttctggctat tacactcgtg 1920 aagactacaa agagattcta gcttacgcta gcgctcgtaa catccaagta atcccttcaa 1980 tggatatgcc gggacacagt ctggcggcag tgaaatcaat ggaagctcgt taccgtaagt 2040 tcatggcaga aggtgatgtt gttaaagcag aaatgtacct actttctgat cctaacgaca 2100 caactcagta ttactcaatt cagcactacc aagacaacac gattaatcca tgtatggaat 2160 caagctttgt cttcatggac aaagtaattg atgaaatcaa taagctacac aaggaaggtg 2220 gtcagcctct aactgattac cacatcggtg ctgatgagac agcaggcgca tggggtgatt 2280 ctcctgaatg tcgtaagatg ttcgtagccc ctgaaagtgg cgttaagaat gctaaagaca 2340 ttaacggtta cttcatcaac cgtatcagcc acatcctaga tgctaaaggt ttgactcttg 2400 gtgcgtggaa cgatggctta tctcataagg cacttgatgc atctagtcta gcgggcaatc 2460 cacctaaagc ttgggtgtgg ggtacaatgt tctggggtgg tgttgaccaa tacaacagct 2520 tcgctaacaa aggctacgat gttgtggtaa ctccgccaga tgcatactac ttcgatatgc 2580 cctacgagaa tgacccagaa gagcgcggtt actactgggc gactcgtttc aacgacacta 2640 agaaagtgtt ctcattcatg cctgaaaacg tgcctgctaa cgttgagtgg atgactgacc 2700 gtatgggtgc gaaaatctca gcaacaacag gtgagaagac tcatgatttc ctcggtgttc 2760 aaggtgctct ctggtctgaa acaatacgta cagatgctca agttgagtac atggttctgc 2820 ctcgtatgat tgccgttgct gagcgtggtt ggcataaagc ctcttgggaa gaagagcata 2880 aagaagggat tacatacact tcaaacgttg acgggcatga aggtactact cacctgaacg 2940 acaacattgc tactcgtgac gctgactggg ctcacttctc taacatccta ggctacaaag 3000 aaatgcctaa gctagataaa gcaggcatta cttaccgtct gccagttctt ggtgctgtta 3060 tcaaaaacaa tatccttgat gttgtgacag agttccacgg tgttgccatc caatattcat 3120 tggatggcaa aacgtggcat aagtacgacg atactaagaa gccccaagtg agtactaagg 3180 cgctcgttcg ttcagtatcg acaaacggtc gtacaggtcg tgcggttgaa gttctagcta 3240 agtaataaca agaattggct aacggggtgc tccaagtcct tgcaccctgt tagccacctc 3300 aattgactag tggagctttt tgaatcggtt agtcttccat tctaaggcat caattaaaac 3360 ttactcatac atgccagccc aatcgtaaaa gaaaggtgca aagcttggtc cgcctgtaat 3420 atgagaaagg ccagcaaaga ttaagtattc cactgtgtca ccggttctaa accgcccacc 3480 aaataagtgc aatcgtctgt cactcccctc acccaattcg atagtaaaag catggttgta 3540 cgcaagcgat acttaaaaga gcaataagtc tcaacctacc aaaaagtatt ttgctgtagc 3600 gactgcatca aaacatcttg cttgaaacac taaactccac tccttatgcc aatatgtaga 3660 aatcttgacg aagtagcctt taacctctaa atattattca tccaacattt tttggttagt 3720 cgctatacaa tcagcattta agataaatcc acagctaaat ttgctcgtca aatcgagcgc 3780 agtttaattt taaaacgctc atacccccac tctgcccaaa aagagatgtt attgtttgtg 3840 acgttaacgt acgctagata tttttattat cattaatgag gtgctaatgt acacttatct 3900 tgcagccgcg ttacgtttgc tccctgcact taccttcgcg gcaccaagtt acaactgcaa 3960 acaagccagc cagatcgcgg aacaagttat ttgtggtagc caagaactcg ccaatttaga 4020 ccttttaatt gctaaacagt atagaaatgc tcttagcgag gctagctcga agaatgacaa 4080 acagtctttg cgtcaggctc agagacggtg ggttcaaaag agaaacgagt gcgagtacag 4140 cgttgactgc ctgaagactg agagcttaga gagacttagc attttgaaga cgagggagtc 4200 agtcgttttt catggggagg agttcttcgc caattaccca atttagagtc cgaccaagtt 4260 ggctcaactt atgagaggca gccaatttct atcttgcaag aaacgtcaaa ttattggaat 4320 ggctatcctt ggtttaaggt ctcagtctct ggaaaaaccg cgtaccaatg gggtggtatt 4380 atttgtgata agctccgccc aaagaagacc ttttgcgaat aagaataatc ggtaaaatct 4440 ctgtttcgga aagcattgat tgctattcct taacgatttc ggggacgggt tcctttaaaa 4500 acgatggtag cggagtctta aaagggacat gcagctcata aaacctctat ccactacctt 4560 gcgatgactg cgtccctttt agataactcc ctggtaagtc cgctctgctg tcaaacacaa 4620 tttatctgca tagagaccct gatttactca aaatttgggg cttatggtgg ctaaaccgca 4680 cttaatgctt atatataatc gctgaagttc tagaagagag gtggcctttg tagaatcacc 4740 tgtaagttgg atagcgagtc cgatgtccaa cttatttggg aagtttttgg acaaaatcga 4800 gcaaaagaca aaagacaaaa gacaaaagac aagtaagcgt tacaatatca gcattacatt 4860 catagctata aaataaatat aaatcatata cttatagtaa aaaacatcat ttgaagttgc 4920 atatatatgc tagctatttg ttaacttacc acttcctgga aaaaaaagct cacactattg 4980 attaatagag tgagctttat ttttcttttt tcaaatcatt cggaagaaag tgccattaaa 5040 atata 5045 // |
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