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EBI DbfetchID L00945; SV 1; linear; genomic DNA; STD; INV; 3550 BP. XX AC L00945; XX DT 07-SEP-1992 (Rel. 33, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 3) XX DE Sciara coprophila retrotransposable element R1 reverse transcriptase gene, DE 3' end. XX KW retrotransposable element R1; reverse transcriptase. XX OS Bradysia coprophila OC Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; OC Endopterygota; Diptera; Nematocera; Sciaroidea; Sciaridae; Bradysia. XX RN [1] RP 1-3550 RX PUBMED; 8383793. RA Burke W.D., Eickbush D.G., Xiong Y., Jakubczak J.L., Eickbush T.H.; RT "Sequence relationship of retrotransposable elements R1 and R2 within and RT between divergent insect species"; RL Mol. Biol. Evol. 10(1):163-185(1993). XX FH Key Location/Qualifiers FH FT source 1..3550 FT /organism="Bradysia coprophila" FT /mol_type="genomic DNA" FT /tissue_lib="Charon 4A (from A. Kerrebrock)" FT /db_xref="taxon:38358" FT CDS <1..3015 FT /codon_start=1 FT /product="reverse transcriptase" FT /db_xref="GOA:Q03277" FT /db_xref="InterPro:IPR015706" FT /db_xref="UniProtKB/Swiss-Prot:Q03277" FT /protein_id="AAA29813.1" FT /translation="LRGEVRGLPSSFRVVTSRIVNDGIGISAIVINDPEADVLVIEDCT FT DEYGVCVLIKGATCSMYVVSVYCRFGTALGPYLQYMENVRVKCGNTYMIMGMDANAVSP FT LWFSKGENLGRGRLNEANGLLLEEWILEGRMIVINEPSEWYTFSGPNGSSDIDVTLVNE FT AGGRFGYEWSVQPEWGVSDHNLIRIRVSLDGLVADASPSPQSARWQTRDTDWGEYMGDV FT KAKADVFGLAQYENVSVDEKVDLLTEWIYGANDWNMRRHTAVRTFQNEWWSVELAEKRS FT ELRRRRHAFQRIRNAGAASLADRLQAFRDCKIEYKRMLCEAKLRCWQEFVASESNENPW FT GRVFKLCRGRRKPVDVCSVKVDGVYTDTWEGSVNAMMNVFFPASIDDASEIDRLKAIAR FT PLPPDLEMDEVSDSVRRCKVRKSPGPDGIVGEMVRAVWGAIPEYMFCLYKQCLLESYFP FT QKWKIASLVILLKLLDRIRSDPGSYRPICLLDNLGKVLEGIMVKRLDQKLMDVEVSPYQ FT FAFTYGKSTEDAWRCVQRHVECSEMKYVIGLNIDFQGAFDNLGWLSMLLKLDEAQSNEF FT GLWMSYFGGRKVYYVGKTGIVRKDVTRGCPQGSKSGPAMWKLVMNELLLALVAAGFFIV FT AFADDGTIVIGANSRSALEELGTRCLQLCHEWGKRVCVPVSAGKTTCILMKGHLSANRP FT PCIRLNGTSISYKSEVKHLGIFVAERMNFRPHFVYLRGKILGLVGCLRRVMRKSWGLGR FT RATCILYKGLFVACMSYGASVWFRTLRFSYASILLNRCQRLVLYASLNVCRTVSTERMQ FT VLHGELPWDLEATRRGLLSEFRKGITPVDGDPITDEEMLGLSGSQFKELLMERLLDVWQ FT GRWDVSEKGRLTHEFIPSVRFVRENEWMAFGLCLGYVLTGHGSMNGFLHKRGLSNTPVC FT MCGAPNEDVKHLLGECPLYEDLRDLNGCGLLIRNGSLDVSGALSEIGAFEKLNQFAVSL FT FGRRSRLMRGMRIRE" FT 3'UTR 3016..3550 XX SQ Sequence 3550 BP; 788 A; 679 C; 1128 G; 955 T; 0 other; ttgcgtgggg aggtaagggg actgccgtct agcttcaggg tggttactag tagaatagtt 60 aacgatggta ttggaatcag tgcgattgtg ataaacgacc ctgaagctga tgtgcttgtc 120 attgaggact gtaccgatga gtacggtgtg tgtgtgttga tcaaaggtgc cacatgtagc 180 atgtacgttg tgtccgtgta ttgtagattt ggtactgccc taggaccata tctgcaatac 240 atggaaaatg tgcgtgtgaa gtgtggtaat acctatatga tcatggggat ggacgcaaat 300 gccgtttccc ccctctggtt cagtaagggt gagaacttgg gaaggggaag gctgaatgaa 360 gcgaatggtc tgctgctcga ggaatggata ctcgaaggca gaatgattgt tatcaatgaa 420 ccctcggagt ggtacacgtt tagtgggccg aatggctcta gcgacattga cgtgacactg 480 gtaaacgaag ctggcggtag gttcgggtat gagtggtctg tgcagcctga atggggtgtt 540 agtgaccata atctgatccg tattcgagtt agcttggacg gactagtggc tgatgcttct 600 ccatcaccac agtctgccag gtggcagacc cgtgatacgg attggggtga atacatggga 660 gatgtgaaag ctaaagcaga tgtgtttggc ctggcgcaat atgaaaacgt gagtgtcgat 720 gagaaggtcg acttactcac agagtggata tacggtgcga acgactggaa catgcggagg 780 cataccgcgg tgcgaacttt ccagaatgag tggtggtctg tcgaacttgc ggagaagagg 840 agtgagctgc gacggcgcag gcatgccttt caacgcattc gtaatgcggg tgccgcaagt 900 ctggcagatc ggctacaggc gtttagggat tgtaagattg agtacaagcg catgttgtgt 960 gaagccaagc ttcggtgctg gcaggagttt gtggctagcg aatccaatga aaacccctgg 1020 ggacgagttt ttaagctctg tcggggtagg aggaagcctg tcgatgtctg tagcgttaaa 1080 gtcgacggtg tgtatactga tacgtgggag ggtagtgtaa atgcgatgat gaacgttttc 1140 tttcctgcct cgatcgatga tgcgagtgag attgaccggc tgaaggcgat tgccagaccc 1200 ttaccacctg atctggagat ggatgaagta tccgactccg tgagaaggtg taaggtgagg 1260 aaaagcccgg ggccggatgg gattgtggga gagatggttc gtgctgtctg gggggcaatc 1320 ccggaatata tgttctgtct gtacaagcag tgcttgctgg agagttactt tccgcagaaa 1380 tggaaaatag cgagcttggt catcttactc aagctcttgg accggataag atctgaccca 1440 ggctcctatc gacctatctg tttgttagat aacttgggca aggtgcttga gggtataatg 1500 gttaagaggc tggatcaaaa gttgatggat gtggaggttt caccgtatca gttcgcgttc 1560 acttacggca agtctactga agatgcatgg agatgcgttc agcggcatgt tgaatgctcg 1620 gagatgaagt acgttattgg gctgaatatc gactttcaag gtgcgtttga caatcttggc 1680 tggctttcca tgcttctgaa gttagatgag gctcagagta atgagtttgg tttgtggatg 1740 agttactttg gtggtcgtaa ggtctactat gttggtaaga ctggcatcgt tcggaaagat 1800 gtgactcgtg ggtgtcctca gggatctaag agtggaccgg cgatgtggaa gcttgtaatg 1860 aatgaactct tgctggcact cgtggcagct ggattcttca ttgtagcttt tgccgacgac 1920 ggtaccattg ttattggggc taatagtcga tcggcgttgg aggagctggg cacgcggtgc 1980 ttgcagttgt gtcatgagtg ggggaagagg gtgtgtgttc cggtgtcggc gggcaagaca 2040 acgtgtatcc ttatgaaggg tcacttgtcg gccaaccggc ctccgtgcat acggctgaac 2100 ggcacctcca tctcctacaa gagtgaggtg aagcacctgg gaatcttcgt tgctgagcgt 2160 atgaatttta ggccgcactt cgtttacctc cggggtaaga ttcttggtct tgttgggtgt 2220 ttgcgtcgtg tgatgaggaa gtcgtggggc ctggggcgta gggcaacttg tattctgtac 2280 aaggggctct tcgtggcgtg tatgtcgtat ggtgcaagcg tgtggttccg gactctgcgc 2340 ttttcgtatg cgtctatctt gctgaataga tgtcaaaggc tagtcctgta tgcatctcta 2400 aacgtgtgtc ggacggtttc cacagagcga atgcaagttc tccacggaga actaccatgg 2460 gatttggagg caacccgtag aggcttactc tccgaattcc gtaaaggcat tacgccggtg 2520 gatggcgatc cgatcacgga tgaagagatg ctagggttga gtggttctca gttcaaggaa 2580 ctgttgatgg agaggttgct ggatgtgtgg cagggcaggt gggatgtctc ggaaaaggga 2640 cgcctcactc atgagtttat tccgagtgtc cgatttgttc gtgagaatga gtggatggcc 2700 tttggactgt gtcttggtta tgtattaacg ggacacggta gcatgaatgg ttttctgcac 2760 aaacgtggtc tgtcaaatac gccggtatgc atgtgtggag cacctaacga ggacgtcaag 2820 cacctactcg gggagtgccc gctctacgag gatcttcgtg atctgaatgg ttgtgggtta 2880 ctcattcgta acggatcgct tgacgttagc ggggcactca gcgagattgg agcgtttgaa 2940 aagttgaatc agtttgcggt atcgctattc ggcaggaggt cgaggttgat gagagggatg 3000 aggatccgtg aatgatgcat gtgtacgccg ttatgtcttg aatgtggttg attgtgggga 3060 gaatgaccgg cgcaggatga gttcagctgg ttgaacggct aaggccaatt ccagactgtc 3120 tctcggagag tgcggactcc gcgcaattcg agctagtcga tcggagctgg aagttcatgc 3180 ttccatccga agtggtcttc gataccacct accctacccg agggttaaat cggtaccacg 3240 ggtgttggga gcccaccagg attgcactat cctcctggtc ccaactatgg ttgaggagcc 3300 tatccttggc tgaaacgtgg tggctgtggt tcaagtgcgt ttaatacgct ggggtactgc 3360 tcccgggtga attgcagtaa gggttgtgat aggcccttgc cctcctttgg ctatctggtg 3420 catgaaacac cggcatataa aggtagtcat ttgacgcgct gattgagcgt atctcaatct 3480 gctcctctta gagaggacga gatgttatgc cttcgggtgg gtaattctcg ttaatataaa 3540 gatattattc 3550 // |
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