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EBI DbfetchID K01690; SV 1; linear; genomic RNA; STD; VRL; 2284 BP. XX AC K01690; XX DT 13-JUN-1985 (Rel. 06, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Avian sarcoma virus retroviral oncogene v-fps fused with gag gene. XX KW c-myc proto-oncogene; fps oncogene; gag protein; gag-fps polyprotein; KW polyprotein. XX OS Avian sarcoma virus OC Viruses; Retro-transcribing viruses; Retroviridae; Orthoretrovirinae; OC Alpharetrovirus; unclassified Alpharetrovirus. XX RN [1] RP 1-2284 RX PUBMED; 6321783. RA Huang C.-C., Hammond C., Bishop J.M.; RT "Nucleotide sequence of v-fps in the PRCII strain of avian sarcoma virus"; RL J. Virol. 50(1):125-131(1984). XX DR RFAM; RF00214; Retro_dr1. XX CC The viral gene v-fps arose by transduction of an undetermined CC portion of a chicken cellular gene c-fps. Viral strain PRCII is CC less oncogenic than the related Fujinama sarcoma virus, which also CC contains v-fps. [1] found that the leftward junctions between fps CC and gag in the two viral strains are different. The right hand CC boundary of the insert has not been determined precisely and could CC be anywhere from base 1999 to base 2017. Three possible target CC sequences were found ('ctcg' at bases 303, 1999 and 2013). XX FH Key Location/Qualifiers FH FT source 1..2284 FT /organism="Avian sarcoma virus" FT /strain="PRCII" FT /mol_type="genomic RNA" FT /db_xref="taxon:11876" FT CDS <1..1906 FT /codon_start=2 FT /note="gag-fps polyprotein" FT /db_xref="GOA:P00541" FT /db_xref="InterPro:IPR000719" FT /db_xref="InterPro:IPR000980" FT /db_xref="InterPro:IPR001060" FT /db_xref="InterPro:IPR001245" FT /db_xref="InterPro:IPR008266" FT /db_xref="InterPro:IPR011009" FT /db_xref="InterPro:IPR017441" FT /db_xref="InterPro:IPR020635" FT /db_xref="InterPro:IPR020685" FT /db_xref="UniProtKB/Swiss-Prot:P00541" FT /protein_id="AAA42415.1" FT /translation="ITRLADTVRTKGLRSPITMAEVEALMSSPLLPHDVTNLMRVILGP FT APYALWMDAWGVQLQTVIAAATRDPRHPANGQGRGERTNLDRLKGLADGMVGNPQAASG FT QLHRPQPQEHTSTSAAAGTWRHTQASESRHRLPHCSAAPSHQDHSAMGFGPELWCPKGH FT SELLRLQDSELRLLELMKKWMSERAKSDREYAGMLHHMFSQLGSEEPPPALPLQEDRQS FT VCSTDQERSGVTALETIKNHISGIFSPRFSLPPPVPLIPEVQKPLCQQAWYHGAIPRSE FT VQELLKCSGDFLVRESQGKQEYVLSVLWDGQPRHFIIQAADNLYRLEGDGFPTIPLLID FT HLLQSQQPITRKSGIVLTRAVLKDKWVLNHEDVLLGERIGRGNFGEVFSGRLRADNTPV FT AVKSCRETLPPELKAKFLQEARILKQYNHPNIVRLIGVCTQKQPIYIVMELVQGGDFLS FT FLRSKGPHLKMKELIKMMENAAAGMEYLESKHCIHRDLAARNCLVTEKNTLKISDFGMS FT RQEEDGVYASTGGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANL FT SNQQTREAIEQGVRLEPPEQCPEDVYRLMQRCWEYDPRRRPSFGAVHQDLIAIRKRHR" XX SQ Sequence 2284 BP; 481 A; 663 C; 750 G; 390 T; 0 other; gatcacaaga ctggctgata cggtcaggac caagggctta cgatccccga ttactatggc 60 agaagtggaa gcgcttatgt cctccccgct gctgccgcat gacgtcacga atctaatgag 120 agttatttta ggacctgccc catatgcctt atggatggac gcttggggag tccaactcca 180 gacagttata gcggcagcca ctcgcgaccc ccgacaccca gcgaacggtc aagggcgggg 240 ggaacggact aatttggatc gcttaaaggg cttagctgat gggatggtgg gcaacccaca 300 ggctgcgtca ggtcagttgc accggcccca gccccaggaa cacaccagca ccagcgctgc 360 agcggggacc tggcggcaca ctcaggcttc ggagtcgcgg cacaggctgc cccactgctc 420 tgcagcccca tcccaccagg atcacagtgc catgggcttt gggccggagc tgtggtgccc 480 gaaggggcac agtgagctgc tgcggctgca ggacagcgag ctgcgcctcc tggagctgat 540 gaagaagtgg atgtcagagc gtgccaagag cgaccgggag tacgcgggga tgctgcacca 600 catgttctct cagctgggct ctgaggagcc ccctcccgcc ttgcccctgc aggaggaccg 660 gcagtcagtg tgctccacgg atcaggagcg cagtggggtg actgcgctgg agaccatcaa 720 gaaccacatc tcgggcatct tcagtcccag gttctcgctg ccacctcccg tgcccctcat 780 cccggaggtg cagaagccgc tgtgccagca ggcctggtac cacggggcca tcccgcgctc 840 ggaggtgcag gagctgctga aatgcagcgg ggacttcctg gtgcgggaga gccaggggaa 900 gcaggagtat gtgctcagcg tgctatggga tgggcagccc cggcacttca tcatccaggc 960 tgctgacaac ctgtacaggc tggaaggcga tggctttccc accatcccgc tgctcatcga 1020 ccacctgctg cagagccagc agcccatcac ccgcaagagc ggcatcgtcc tgaccagagc 1080 cgtgctcaag gacaagtggg tgctcaacca tgaggacgtg ctgctggggg agcgcattgg 1140 ccgggggaac ttcggggagg tgttcagcgg ccgcctgcgt gctgacaaca cccccgtggc 1200 ggtgaaatcc tgccgggaaa ccctgccgcc cgagctgaag gccaagttcc tgcaggaagc 1260 caggatcctc aagcagtaca accatcccaa catcgtccgg ctcatcggcg tctgcaccca 1320 gaagcagccc atttacatcg tcatggagct ggtgcaggga ggggacttcc tgagcttcct 1380 gcgcagcaag gggccccacc tgaagatgaa ggagctgatc aagatgatgg agaatgccgc 1440 ggcgggcatg gagtacctgg agagcaagca ctgcatccac agggacctgg ctgcccgcaa 1500 ctgcctggtg acagagaaga acaccctgaa aatcagcgac tttgggatgt cgcggcagga 1560 ggaggatggt gtctatgcct ccacgggggg catgaagcag atccccgtga agtggactgc 1620 ccccgaggct ctgaattacg gccggtacag ctcggagagc gacgtgtgga gctttgggat 1680 cctgctgtgg gaagccttca gcctgggcgc cgtgccctac gccaacctca gcaaccagca 1740 gacgcgcgag gccatcgagc agggcgtgcg gctggagccc ccggagcagt gccccgagga 1800 cgtgtaccgc ctgatgcagc gctgctggga gtacgaccct cgcaggcggc cgagcttcgg 1860 cgccgtccac caggacctta tcgccatccg caaacggcac cgctgagcgg ctgcgcccgc 1920 ccgggcggcg gggccagaga gcggcggggc cggaggtgcg gagggccgcg gtgcgctgct 1980 gcgaaataaa agtcggctct gcaaaaaaaa aactgcgctt aggcttttgc gctccttcgc 2040 gatgtacggg tcaggtatag tgtgcagttt gactgagggg accatgatgt gtataggcgt 2100 caagcggggt ttcggttgta cgcagacagg ggtctcctca gaaagtacta gatgcgcctt 2160 tgcataggga gggggaaatg tagtcttaca caataatgtt atgtaacgat gagacagcaa 2220 tacgccttat aaggagagaa agggtaccgt gcatgatgat tggtggaagc aagatggtat 2280 gatc 2284 // |
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