 |
|
EBI DbfetchID J05004; SV 1; linear; genomic DNA; STD; PRO; 3660 BP. XX AC J05004; XX DT 02-FEB-1990 (Rel. 22, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 5) XX DE Vibrio harveyi N,N'-diacetylchitobiase (chb) gene, complete cds, and ORF. XX KW chitobiase; chitobiose; N,N'-diacetylchitobiose; N-N'-diacetylchitobiase; KW ORF; outer membrane lipoprotein. XX OS Vibrio harveyi OC Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; OC Vibrio. XX RN [1] RP 1-3660 RX PUBMED; 2670926. RA Soto-Gil R.W., Zyskind J.W.; RT "N,N'-diacetylchitobiase of Vibrio harveyi. Primary structure, processing, RT and evolutionary relationships"; RL J. Biol. Chem. 264(25):14778-14783(1989). XX CC Draft entry and computer-readable sequence for [1] kindly submitted CC by J.W.Zyskind, 14-JUN-1989. XX FH Key Location/Qualifiers FH FT source 1..3660 FT /organism="Vibrio harveyi" FT /strain="B392" FT /mol_type="genomic DNA" FT /clone="pRSG16." FT /db_xref="taxon:669" FT mRNA 296..>3098 FT /gene="chb" FT gene 296..3098 FT /gene="chb" FT CDS 447..3098 FT /codon_start=1 FT /transl_table=11 FT /gene="chb" FT /product="N,N'-diacetylchitobiase" FT /EC_number="3.2.1.30" FT /note="precursor" FT /db_xref="GOA:P13670" FT /db_xref="InterPro:IPR001540" FT /db_xref="InterPro:IPR004866" FT /db_xref="InterPro:IPR004867" FT /db_xref="InterPro:IPR008965" FT /db_xref="InterPro:IPR012291" FT /db_xref="InterPro:IPR013781" FT /db_xref="InterPro:IPR013812" FT /db_xref="InterPro:IPR014756" FT /db_xref="InterPro:IPR015882" FT /db_xref="InterPro:IPR015883" FT /db_xref="InterPro:IPR017853" FT /db_xref="UniProtKB/Swiss-Prot:P13670" FT /protein_id="AAA88682.1" FT /translation="MLKHSLIAASVITTLAGCSSLQSSEQQVVNSLADNLDIQYEVLTN FT HGANEGLACQDMGAEWASCNKVNMTLVNQGEAVDSKDWAIYFHSIRLILDVDNEQFKIS FT RVTGDLHKLEPTDKFDGFAAGEEVVLPLVGEYWQLFETDFMPGAFVSAPNAEPKMIASL FT NTEDVASFVTGLEGNNLKRTPDDNNVFANAVSRFEKNEDLATQDVSTTLLPTPMHVEAG FT KGKVDIADGIALPKDAFDATQFAAIQDRAEVVGVDVRGDLPVSITVVPADFTGELAKSG FT AYEMSIKGDGIVIKAFDQAGAFYAVQSIFGLVDSQNADSLPQLSIKDAPRFDYRGVMVD FT VARNFHSKDAILATLDQMAAYKMNKLHLHLTDDEGWRLEIPGLPELTEVGANRCFDTQE FT KSCLLPQLGSGPTTDNFGSGYFSKADYVEILKYAKARNIEVIPEIDMPAHARAAVVSME FT ARYDRLMEEGKEAEANEYRLMDPQDTSNVTTVQFYNKQSFINPCMESSTRFVDKVISEV FT AAMHQEAGAPLTTWHFGGDEAKNIKLGAGFQDVNAEDKVSWKGTIDLSKQDKPFAQSPQ FT CQTLITDGTVSDFAHLPSHFAEEVSKIVAEKGIPNFQAWQDGLKYSDGEKAFATENTRV FT NFWDVLYWGGTSSVYEWSKKGYDVIVSNPDYVYMDMPYEVDPKERGYYWATRATDTRKM FT FGFAPENMPQNAETSVDRDGNGFTGKGEIEAKPFYGLSAQLWSETVRNDEQYEYMVFPR FT VLAAAQRAWHRADWENDYKVGVEYSQNSNLVDKASLNQDYNRFANVLGQRELAKLEKSG FT IDYRLPVPGAKVEDGKLAMNVQFPGVTLQYSLDGENWLTYADNARPNVTGEVFIRSVSA FT TGEKVSRITSVK" FT sig_peptide 447..497 FT /gene="chb" FT mat_peptide 498..3095 FT /gene="chb" FT /product="N,N'-diacetylchitobiase" FT /EC_number="3.2.1.30" FT terminator 3136..3165 FT /note="putative" FT CDS 3549..>3660 FT /codon_start=1 FT /transl_table=11 FT /product="unknown protein" FT /note="ORF; putative" FT /db_xref="UniProtKB/TrEMBL:Q56695" FT /protein_id="AAA88683.1" FT /translation="MKNVLALSALSLVFASSAFAGSSYVTGNIQFHDDGRI" XX SQ Sequence 3660 BP; 1076 A; 752 C; 812 G; 1020 T; 0 other; gaattcaata agcactttat ctataacatg gttcggcaaa atcgtcattt tttaaaaaat 60 tgacgagttt taacggctag gaaatgagag gtaattcacg aaagtgtttc aattgagttt 120 gttgttaatg gttcacttaa taaccaatag tgatcagaat cctacaaaat cagtcaaaac 180 ccatcgatat tcgtgattga gatcgcaaca aactcgtcaa aaaaagttag ccgcttttaa 240 cgtaaagttt aacttgttga aattattatt tttatatttt tgaatgcttg gcttaatttg 300 agccagatca cttcttagtt ttattaattt tacgcttaga aataactgct tgtatgttga 360 atgcaactgt taagcgcctc gcatttaggt gctcaccatt tttaataaat gtcgttttga 420 accactgact ttttggggaa agtaagatgt tgaaacatag tctgattgct gcttctgtta 480 tcactacatt ggcaggctgc tcttcactac agagctctga gcaacaagtt gtaaactcac 540 tggctgataa ccttgatatc caatatgaag tgttaactaa ccatggtgct aacgaaggtc 600 ttgcgtgcca agatatgggc gcagaatggg cttcttgtaa caaagtaaac atgacgcttg 660 ttaaccaagg tgaagctgtt gactcaaaag attgggctat ttacttccac agcattcgtc 720 tgattctgga tgttgacaac gagcagttca aaatctctcg tgtaacgggt gacctacata 780 agctagaacc aacagataag tttgacggct tcgctgccgg tgaagaggtt gttcttccat 840 tggttggtga atactggcaa ctatttgaaa ctgacttcat gccgggtgca ttcgtttctg 900 ctccaaacgc agaacctaag atgattgctt ctctaaatac tgaagatgtt gcgtcttttg 960 tgacgggtct tgaaggtaac aacctaaaac gtacaccaga tgacaacaat gtatttgcaa 1020 acgctgtgtc tcgttttgag aaaaacgaag acctagcaac acaagacgta tcaaccacgt 1080 tactaccaac accaatgcac gttgaagcgg gtaaaggcaa agtagatatc gcggatggta 1140 ttgcgctgcc taaagacgca ttcgatgcga ctcagttcgc agcgattcaa gatcgtgcag 1200 aagtggtagg tgtggacgtt cgtggtgatc ttcctgtaag catcactgtt gttcctgcag 1260 acttcaccgg tgaattagca aaatctggtg cttacgaaat gagcatcaaa ggcgacggta 1320 ttgtgattaa agcgttcgac caagcaggcg ctttctacgc agtacaatct atctttggcc 1380 tggtagatag ccaaaatgct gattctctac cacaactgtc tattaaagat gcgcctcgtt 1440 ttgattaccg tggtgtgatg gtggatgtgg ctcgtaactt ccactctaag gacgcaatcc 1500 ttgcaacgct agaccaaatg gcagcgtaca agatgaacaa acttcacctt cacctaaccg 1560 atgatgaagg ctggcgttta gaaatcccgg gtctgcctga gctgacagaa gtgggtgcta 1620 accgttgttt cgatacacaa gagaaaagct gtttactgcc tcagcttggc tctggtccaa 1680 cgacagacaa ctttggctct ggctacttca gcaaagcaga ctacgtggaa atcttgaaat 1740 acgcgaaagc acgtaacatt gaagtgattc cagaaatcga tatgccagct cacgctcgtg 1800 cagcagtagt atcaatggaa gctcgttacg accgcctaat ggaagaaggt aaagaagctg 1860 aagcgaacga ataccgtctg atggatcctc aagatacatc aaacgtaacg acggttcagt 1920 tctacaataa gcaaagcttc atcaacccat gtatggaatc ttcaactcgc tttgttgata 1980 aggtgatttc agaagtggca gcaatgcacc aagaagctgg cgctccacta acaacttggc 2040 acttcggtgg tgacgaagcg aagaacatca agctaggtgc tggtttccaa gacgttaacg 2100 cagaagataa agtaagctgg aaaggcacga ttgacctgtc taaacaagac aagccgtttg 2160 cacagtctcc acaatgtcag acgctaatca cagatggcac agtcagtgac tttgctcacc 2220 taccaagcca cttcgcggaa gaagtgtcga agattgttgc tgagaaaggc attccaaact 2280 tccaagcttg gcaagatggt ttgaaataca gtgacggcga aaaagcgttc gctacagaaa 2340 atactcgcgt aaacttctgg gacgttctgt actggggcgg tacttcctca gtgtacgagt 2400 ggtctaagaa aggttacgac gtgattgttt ctaacccaga ttacgtgtac atggatatgc 2460 catacgaagt tgacccgaaa gagcgtggtt actactgggc aacacgtgca acggatactc 2520 gtaagatgtt tggctttgca ccagagaaca tgcctcaaaa cgcagaaact tctgtagatc 2580 gcgatggcaa tggctttact ggtaaaggtg aaatcgaagc gaaacctttc tacggtctat 2640 ctgcacaact ttggtctgag acagtacgta acgacgagca atacgagtac atggtattcc 2700 ctcgcgtcct cgctgctgct cagcgtgcat ggcaccgtgc tgactgggaa aacgactaca 2760 aagttggtgt tgagtactcg caaaactcta atctagttga taaagcatcg ctaaaccaag 2820 actacaaccg ctttgcgaac gtacttggtc aacgtgaact ggctaagcta gaaaaatcag 2880 gtattgacta ccgcctacca gtaccaggtg caaaagtaga agatggtaag ctagcaatga 2940 acgttcagtt ccctggcgta acgcttcaat actctctgga tggtgagaac tggttgactt 3000 atgcagacaa cgctcgtcca aatgtaactg gtgaagtctt catccgctcg gtatctgcga 3060 caggtgagaa ggtaagccgt atcactagcg tgaaataata gcgctcagta ttcactaaaa 3120 tcatagttcc ttactcaaag ccctcaactt atgttggggg ctttgtttat ttttcttcgg 3180 aaaataagcg tgatcaatgt ctaattattt tttattgata attaagtttc taatttaggg 3240 tgtctgtcat agtgtgatct ggatgtgtat ttaactgtca aataaaaggg gagatatgcc 3300 ttacttcaca ctttattttt tttacgaatt tttagttttt atatcaaacc actgtattta 3360 ataaactttt tttaatttcg aaaatcacga tttgaatttg atcactgttt taaacgattt 3420 atttttcaat gcgaattaaa ttgcgcagta ttgccgtcgc cagggaggca catcccaaag 3480 tatgtgatga gaggcaagtg atagccaaaa aactcgtcgc ataacgtgaa caaataaagg 3540 cagtaattat gaaaaacgtt ttagcactaa gtgcactttc tcttgttttc gcttcaagcg 3600 ctttcgcggg ttcatcttat gtaactggta acatccaatt ccacgatgac ggtcgaattc 3660 // |
|