EBI Dbfetch

ID   FN179393; SV 1; linear; mRNA; STD; PLN; 1989 BP.
XX
AC   FN179393;
XX
DT   07-MAY-2009 (Rel. 100, Created)
DT   07-MAY-2009 (Rel. 100, Last updated, Version 1)
XX
DE   Hordeum vulgare subsp. vulgare mRNA for beta-amylase (BAM1 gene)
XX
KW   .
XX
OS   Hordeum vulgare subsp. vulgare (domesticated barley)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade;
OC   Pooideae; Triticeae; Hordeum.
XX
RN   [1]
RP   1-1989
RA   Radchuk V.V.;
RT   ;
RL   Submitted (26-FEB-2009) to the EMBL/GenBank/DDBJ databases.
RL   Radchuk V.V., Department of Molecular Genetics, Institute of Plant Genetics
RL   and Crop Plant Research (IPK), Corrensstrasse 3, D-06466, GERMANY.
XX
RN   [2]
RA   Radchuk V.V., Borisjuk L., Sreenivasulu N., Merx K., Mock H.P.,
RA   Rolletschek H., Wobus U., Weschke W.;
RT   "SPATIO-TEMPORAL PROFILING OF STARCH BIOSYNTHESIS AND DEGRADATION IN THE
RT   DEVELOPING BARLEY GRAIN";
RL   Plant Physiol. 150(1):190-204(2009).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1989
FT                   /organism="Hordeum vulgare subsp. vulgare"
FT                   /sub_species="vulgare"
FT                   /cultivar="Barke"
FT                   /mol_type="mRNA"
FT                   /db_xref="taxon:112509"
FT   5'UTR           1..40
FT                   /gene="BAM1"
FT   CDS             41..1648
FT                   /gene="BAM1"
FT                   /product="beta-amylase"
FT                   /function="involved in starch degradation"
FT                   /EC_number="3.2.1.2"
FT                   /db_xref="HSSP:1B1Y"
FT                   /db_xref="InterPro:IPR018238"
FT                   /db_xref="UniProtKB/TrEMBL:Q84T20"
FT                   /protein_id="CAX51376.1"
FT                   /translation="MEVNVKGNYVQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGV
FT                   DGVMVDVWWGLVEGKGPKAYDWSAYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIP
FT                   IPQWVRDVGTCDPDIFYTDGHGTRNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENM
FT                   KEFLDAGVIVDIEVGLGPAGEMRYPSYPQSHGWSFPGIGEFICYDKYLQADFKAAAAAV
FT                   GHPEWEFPNDVGQYNDTPERTQFFRDNGTYLSEKGRFFLAWYSNNLIKHGDRILDEANK
FT                   VFLGYKVQLAIKISGIHWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFT
FT                   CAEMRDSEQSSQAMSAPEELVQQVLSAGWREGLNVACENALPRYDPTAYNTILRNARPH
FT                   GINQSGPPEHKLFGFTYLRLSNQLVEGQNYANFKTFVDRMHANLPRDPYVDPMAPLPRS
FT                   GPEISIEMILQAAQPKLQPFPFQEHTDLPVGPTGGMGGQAEGPTCGMGGQVKGPTGGMG
FT                   GQAEDPTSGMGGELPATM"
FT   3'UTR           1649..1989
FT                   /gene="BAM1"
XX
SQ   Sequence 1989 BP; 522 A; 469 C; 548 G; 450 T; 0 other;
     cggcacgtgg gccgggcatc atccatagcc agcatccaca atggaggtga acgtgaaagg        60
     caactatgtc caagtctacg tcatgctccc tctggacgcc gtgagcgtga acaacaggtt       120
     cgagaagggc gacgagctga gggcgcaatt gaggaagctg gtagaggccg gtgtggatgg       180
     tgtcatggta gacgtctggt ggggcttggt ggagggcaag ggccccaagg cgtatgactg       240
     gtccgcctac aagcagttgt ttgagctggt gcagaaggct gggctgaagc tacaggccat       300
     catgtcgttc caccagtgtg gtggcaacgt cggcgacgcc gtcaacatcc caatcccaca       360
     gtgggtgcgg gacgtcggca cgtgtgatcc cgacattttc tacaccgacg gtcacgggac       420
     taggaacatt gagtacctca ctcttggagt tgataaccag cctctcttcc atggaagatc       480
     tgccgtccag atgtatgccg attacatgac aagcttcagg gagaacatga aagagttctt       540
     ggatgctggt gttatcgtcg acattgaagt aggacttggc ccagctggag agatgaggta       600
     cccatcatat cctcagagcc acggatggtc gttcccaggc atcggagaat tcatctgcta       660
     tgataaatac ctacaagcag acttcaaagc agcagcagcg gcggttggcc atcctgagtg       720
     ggaatttcct aacgatgtcg ggcagtacaa tgacactccc gagagaactc aattcttcag       780
     agacaacggg acatacctaa gtgagaaggg gaggtttttc cttgcatggt actccaacaa       840
     tctgatcaag cacggtgaca ggatcttgga tgaagcaaac aaggtcttct tgggatacaa       900
     ggtgcaactg gcaatcaaga tctctggcat tcactggtgg tacaaggttc caagccatgc       960
     agccgagctc acagctgggt actacaactt acatgataga gacggctaca gaaccatagc      1020
     acgcatgctc aaaaggcacc gtgctagcat taacttcact tgcgcggaga tgagggattc      1080
     ggagcaaagc tcgcaggcga tgagcgcacc agaagaacta gtccaacagg tgttgagtgc      1140
     tggatggaga gagggcctaa atgtggcatg cgaaaacgcg cttccacgat atgatccaac      1200
     tgcttacaac accatactca ggaatgcgag gcctcatgga atcaaccaga gcggccctcc      1260
     tgagcacaag ctgtttggat tcacctacct tcggctgtcg aatcagctgg tggagggaca      1320
     aaactatgcc aatttcaaga cctttgtcga cagaatgcat gccaacctgc ctcgtgaccc      1380
     atatgttgat ccaatggcgc ctttgccaag atcagggcca gaaatatcga ttgagatgat      1440
     cctacaagca gcacagccaa aactgcagcc attccccttc caggagcaca ccgacctgcc      1500
     agtaggccct actggtggca tgggtgggca ggctgaaggc cccacctgtg gcatgggtgg      1560
     gcaagttaaa ggccctactg gtggcatggg tgggcaggct gaagacccta ctagtggcat      1620
     gggtggggag ctccctgcca ccatgtaatg gaacctttat gatttactac cctttatgtt      1680
     gtgtgtgagt gtgacagaga aacctttctc tgccttatta ataataaata aagcacatca      1740
     cttgtgtgtg ttctgaaaaa aagatctcga tgtgtagtct acgagaaggg ttaaccgtct      1800
     cttcgtgaga ataaccgtgg cctaaaaata agccgatgag gataaataaa atgtggtggt      1860
     acagtacttc aagaggttta ctcatcaaga ggatgctttt ccgatgagct ctagtagtac      1920
     atcggacctc acatacctcc attgtggtga aatattttgt gctcatttag tgatgggtaa      1980
     attttgttt                                                              1989
//