EBI Dbfetch

ID   EU760961; SV 1; linear; mRNA; STD; PLN; 2048 BP.
XX
AC   EU760961;
XX
DT   27-JUN-2008 (Rel. 96, Created)
DT   23-JUL-2008 (Rel. 96, Last updated, Version 2)
XX
DE   Coffea canephora putative xylosyl transferase (XT1b) mRNA, complete cds.
XX
KW   .
XX
OS   Coffea canephora
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons;
OC   asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea.
XX
RN   [1]
RP   1-2048
RX   DOI; 10.1093/aob/mcn076
RX   PUBMED; 18562467.
RA   Pre M., Caillet V., Sobilo J., McCarthy J.;
RT   "Characterization and expression analysis of genes directing galactomannan
RT   synthesis in coffee";
RL   Ann. Bot. 102(2):207-220(2008).
XX
RN   [2]
RP   1-2048
RA   Mendocilla Sato E., Pre M., Lin C., Tanksley S.D., McCarthy J.;
RT   ;
RL   Submitted (26-MAY-2008) to the EMBL/GenBank/DDBJ databases.
RL   Nestle Research and Development Centre, 101, Avenue Gustave Eiffel, Tours
RL   37097, France
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2048
FT                   /organism="Coffea canephora"
FT                   /mol_type="mRNA"
FT                   /clone="pcccl23g20"
FT                   /db_xref="taxon:49390"
FT   gene            1..2048
FT                   /gene="XT1b"
FT                   /note="CcXT1b"
FT   5'UTR           1..419
FT                   /gene="XT1b"
FT   CDS             420..1802
FT                   /codon_start=1
FT                   /gene="XT1b"
FT                   /product="putative xylosyl transferase"
FT                   /note="glycosyl transferase family 34; similar to
FT                   Arabidopsis AtXT1 (At3g62720) and AtXT2 (At4g02500)"
FT                   /db_xref="GOA:B3VL39"
FT                   /db_xref="InterPro:IPR008630"
FT                   /db_xref="UniProtKB/TrEMBL:B3VL39"
FT                   /protein_id="ACE95677.1"
FT                   /translation="MLERCLSPRRARQMQRLLRNGKLTLLCLFLTVIVLRANLGAGKFG
FT                   TPEQDLNDIRETFSYIRRRAEPRRVLEEARQTFTATDNGASDTNSYADFDIKRIIADED
FT                   DGDEVVYKRDPNQPYSLGPKISNWDQQRAEWLKKNPNFRNFVAPNKPRVLLVTGSSPKP
FT                   CENPVGDHYLLKSIKNKIDYCRLHGIEIFYNFALLDAEMSGFWAKLPLIRKLLLSHPEV
FT                   EFLWWMDSDAMFTDMAFELPWERYKDHNFVMHGWNEMVYDQRNWIGLNTGSFLLRNCQW
FT                   SLDILDTWAPMGPKGKIRDEAGELLTRELKDRPVFEADDQSAMVYILTTQREKWAGKVY
FT                   LESAYYLHGYWGILVDRYEEMIENYHPGLGDHRWPLVTHFVGCKPCGKFGDYSVERCLK
FT                   QMDRAHNFADNQILQMYGFTHKSLASRKVKRTRNETSNPLEVQDELGLLHPAFKAVKVS
FT                   AS"
FT   3'UTR           1803..2048
FT                   /gene="XT1b"
XX
SQ   Sequence 2048 BP; 542 A; 403 C; 458 G; 645 T; 0 other;
     cacacacaca cacacagctg ttctctcctt tcctttctaa taataatcac cttctttcca        60
     tattcttttc tctccagctt ccttcaaatc tcgcctctca ctctcttcac cgacactacc       120
     cccacgcaat cacccctcgc ccaacaatcc ctttacccta tcccgtaccg caaattcata       180
     ccctagctct actttcttca aacccctcac acatctcaat ctgttaattc aaccaaaggc       240
     tagaatagaa acccattatc atattcttct tcttcttttt ttaatatctc ctatatttcc       300
     acttttccaa tgaaacccat ctccattgtc tgacaatcgc tcctaacatt tattattttg       360
     tagtactaga ctttgaatta tcacgtactg tttgatcttt cctcctaaag aagaaaaaga       420
     tgctggaaag atgcttgagc ccgcgtcgag ctaggcaaat gcagaggctc ttgagaaatg       480
     ggaagcttac acttctttgc ctgtttctta cggtcatcgt tttaagagct aatctgggtg       540
     ctggaaaatt tggcacaccc gagcaggacc ttaatgacat ccgggaaacc ttttcttaca       600
     tccgccggcg agctgagccc cgccgtgttc ttgaagaggc ccggcaaacc tttactgcca       660
     cggataatgg tgcttctgat accaatagtt atgctgattt cgatattaaa aggataatcg       720
     ctgatgaaga tgacggtgat gaggtagtgt acaagagaga tcccaatcag ccctatagtt       780
     tgggcccgaa aatatcgaat tgggatcagc agagagctga atggctgaag aaaaatccca       840
     actttcggaa ttttgtagca cccaataagc ctagggtgtt gttggttact ggttcgtcgc       900
     ctaagccctg tgagaatcct gttggggatc attacttgtt gaaatcgata aagaataaga       960
     ttgattattg taggctacat gggattgaga ttttctataa ttttgccctg cttgatgcgg      1020
     agatgtctgg gttttgggcg aaattgccat tgatcaggaa gcttttgctt tcgcatcctg      1080
     aggttgagtt tctctggtgg atggatagtg atgctatgtt tacggatatg gcgtttgaat      1140
     tgccatggga gaggtataag gatcataatt tcgtgatgca cgggtggaat gaaatggttt      1200
     atgaccagag gaattggatt gggctgaata ctggtagctt tttgttgagg aactgtcaat      1260
     ggtctttgga tattcttgat acttgggcac ctatgggtcc taaaggcaag ataagggatg      1320
     aagctggaga gcttctgact agggagctta aggatagacc ggtttttgaa gctgatgatc      1380
     agtctgctat ggtttatata ttgacaactc agagggagaa gtgggccggg aaggtgtacc      1440
     ttgagagtgc ttattatttg cacggttatt ggggaatttt agtggatcga tacgaggaaa      1500
     tgattgagaa ttatcatcct ggtctgggcg atcatcggtg gccacttgtg actcactttg      1560
     tcggttgcaa gccttgtgga aagtttgggg attattcagt tgagaggtgt ttgaagcaga      1620
     tggatcgtgc acataatttt gcagacaatc agattcttca gatgtatgga ttcactcaca      1680
     agtcacttgc tagtcggaaa gtcaaaagga cacggaatga gacaagtaat cctcttgaag      1740
     tgcaagatga gcttgggcta cttcaccctg catttaaagc tgttaaggtt tctgcttctt      1800
     aggtgcgcat tggaggggta gatttggaat caagattagg ttgccctatc tgccttattt      1860
     ttgttttttg ggggactgtt aatcataata catgtcattt tgtattttgt tgttgtctct      1920
     cactcgtcta gagctctggt tcttgtattc ctttatttgt cgcaatcttt atgtgaaata      1980
     gtcttaatga aagcatagtc agaatttgta ttagctgtta aaaaaaaaaa aaaaaaaaaa      2040
     aaaaaaaa                                                               2048
//