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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   EU716313; SV 1; linear; mRNA; STD; PLN; 1695 BP.
XX
AC   EU716313;
XX
DT   23-JUL-2008 (Rel. 96, Created)
DT   23-JUL-2008 (Rel. 96, Last updated, Version 1)
XX
DE   Coffea canephora putative galactomannan galactosyl transferase (GMGT2)
DE   mRNA, complete cds.
XX
KW   .
XX
OS   Coffea canephora
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons;
OC   asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea.
XX
RN   [1]
RP   1-1695
RX   DOI; 10.1093/aob/mcn076
RX   PUBMED; 18562467.
RA   Pre M., Caillet V., Sobilo J., McCarthy J.;
RT   "Characterization and expression analysis of genes directing galactomannan
RT   synthesis in coffee";
RL   Ann. Bot. 102(2):207-220(2008).
XX
RN   [2]
RP   1-1695
RA   Caillet V., Lin C., Tanksley S.D.;
RT   ;
RL   Submitted (28-APR-2008) to the EMBL/GenBank/DDBJ databases.
RL   Nestle Research and Development Centre, 101, Avenue Gustave Eiffel, Tours
RL   37097, France
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1695
FT                   /organism="Coffea canephora"
FT                   /mol_type="mRNA"
FT                   /clone="pcccl26f9"
FT                   /db_xref="taxon:49390"
FT   gene            1..1695
FT                   /gene="GMGT2"
FT   5'UTR           1..48
FT                   /gene="GMGT2"
FT   CDS             49..1392
FT                   /codon_start=1
FT                   /gene="GMGT2"
FT                   /product="putative galactomannan galactosyl transferase"
FT                   /note="CcGMGT2; similar to Trigonella foenum-graecum alpha
FT                   galactosyltransferase protein responsible for galactomannan
FT                   biosynthesis in GenBank Accession Number CAB52246;
FT                   Nicotiana benthamiana putative glycosyltransferase in
FT                   GenBank Accession Number CAI11458; Solanum tuberosum
FT                   putative glycosyltransferase in GEnBank Accession Number
FT                   CAI11457; and Lotus japonicus putative glycosyltransferase
FT                   in GenBank Accession Number CAI11456; similar to
FT                   Arabidopsis thaliana galactosyl transferase GMA12/MNN10
FT                   family protein (TAIR:AT5G07720.1); contains InterPro domain
FT                   galactosyltransferase (InterPro:IPR008630)"
FT                   /db_xref="GOA:B4YYG3"
FT                   /db_xref="InterPro:IPR008630"
FT                   /db_xref="UniProtKB/TrEMBL:B4YYG3"
FT                   /protein_id="ACF33173.1"
FT                   /translation="MSRAKAQTKQSSYISRDSSRSYFLAVFVSMVLVFVICSLTETLPS
FT                   FQNRISTTGADTCNGEPPAVNRTHDPKEATFYDEPELTYTLGKTIKDWDKKRKSWLNLH
FT                   PSFAAGADTRILIVTGSQPSPCKNPIGDHLLLRCFKNKADYSRIHGYDIFYNTACLDPK
FT                   LCNVWAKVALIRAAMVAHPEAEWIWWMDSDAVFTDMYFKVPLQRYKQHNLVVPGWPDMV
FT                   YEKKSWVSLNTGSFFTRNCQWSLDFLDAWARMSPRSPDYKFWSETLMSTLSDKMFPGAD
FT                   EQSSLVYLLLTEKKKWGDKIYLENQYDLSSYWVGVVGKLDKFTRTEADAEKNLPLLRRR
FT                   RAEVVGESVGEVWEKYLENNTASEGKRPFITHFTGCQPCSGNHDPSYVGNTCWDAMERT
FT                   LNYADNQVLRNLGFVHRDISRGSYVLPLAFDFPSEVLQRKKSGEEYNR"
FT   3'UTR           1393..1695
FT                   /gene="GMGT2"
XX
SQ   Sequence 1695 BP; 502 A; 348 C; 406 G; 439 T; 0 other;
     ctctctcttt ggcaaaaaaa caagaagcaa cagtaaagcc ggccagccat gtctagagct        60
     aaagctcaga ccaaacaatc atcatatatt tccagagata gcagcaggtc gtacttcctc       120
     gctgtatttg tctccatggt actcgtcttt gtcatatgtt ccttgacaga aactttgccc       180
     agtttccaaa ataggatttc aactaccggt gctgatacct gtaacggcga accaccagcc       240
     gtaaatcgaa cccacgaccc taaagaagcc actttttacg acgaacccga gctaacctac       300
     acgctaggca aaaccatcaa agactgggac aagaagagaa agtcctggct aaaccttcat       360
     ccctcgttcg ccgcgggtgc cgacacacgt attctcatcg tgacggggtc tcagccttcg       420
     ccatgcaaga atcccatcgg ggatcatcta ctcctgaggt gtttcaagaa caaggctgat       480
     tattccagaa tccacggcta cgatatcttt tacaacaccg catgtttaga ccccaagctg       540
     tgcaacgttt gggctaaggt agctttaatt cgggctgcca tggtggccca cccggaagca       600
     gagtggatct ggtggatgga ctccgatgct gtctttactg acatgtactt taaagttccg       660
     ttacagaggt acaagcagca taatctggtt gttcccggct ggcccgacat ggtttacgag       720
     aagaagagtt gggtttctct aaataccggg agtttcttca cgagaaattg tcagtggtct       780
     ttggattttt tggatgcctg ggctcgtatg agcccccgaa gccctgatta caagttctgg       840
     agtgaaactt taatgtctac gctttcggat aagatgttcc cgggagcaga tgagcagtcg       900
     tctttggttt atttgctgtt gacagaaaag aagaaatggg gggataagat ttatttagag       960
     aatcagtacg acttgagctc ttattgggta ggcgtagttg gaaagcttga taaatttacg      1020
     aggacggagg ctgacgcaga gaagaatttg cccttgctaa ggaggagaag ggcggaggtg      1080
     gtgggcgaga gcgttggtga ggtgtgggag aagtacttgg aaaataatac cgctagcgag      1140
     ggtaaacggc cgtttattac gcatttcacg ggatgccagc cctgcagcgg aaaccatgac      1200
     ccctcctacg ttggaaatac ctgctgggat gcaatggaga ggactctgaa ttatgctgat      1260
     aatcaggtcc ttcgtaactt gggttttgtg cacagggata taagccgtgg ctcttacgtt      1320
     ttacccctag cctttgattt tccatcggaa gtgctgcaaa gaaagaaatc cggtgaagaa      1380
     tataacaggt gaataaatcc ctccgtttta gtgctgttta tagattatag cagccagcag      1440
     gacttgggcc ctgaaaattc agtatctcag aaaaaaaatg acagtgaaat tgagagagca      1500
     aaaatgtttt cacaagcttg tcgtggtaaa ttcctcagta attgagtgaa tttcaagata      1560
     cttatatttg ttgccacgaa atttgttgat gctttttcct gttggtcaac aaaatcgaat      1620
     tgattgagtg tgctttttaa taaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      1680
     aaaaaaaaaa aaaaa                                                       1695
//
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