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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   EU716312; SV 1; linear; mRNA; STD; PLN; 797 BP.
XX
AC   EU716312;
XX
DT   23-JUL-2008 (Rel. 96, Created)
DT   26-AUG-2008 (Rel. 96, Last updated, Version 2)
XX
DE   Coffea canephora putative galactosyl transferase (GT1) mRNA, partial cds.
XX
KW   .
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OS   Coffea canephora
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons;
OC   asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea.
XX
RN   [1]
RP   1-797
RX   DOI; 10.1093/aob/mcn076
RX   PUBMED; 18562467.
RA   Pre M., Caillet V., Sobilo J., McCarthy J.;
RT   "Characterization and expression analysis of genes directing galactomannan
RT   synthesis in coffee";
RL   Ann. Bot. 102(2):207-220(2008).
XX
RN   [2]
RP   1-797
RA   Sobilo J., Lin C., Tanksley S.D.;
RT   ;
RL   Submitted (08-APR-2008) to the EMBL/GenBank/DDBJ databases.
RL   Nestle Research and Development Centre, 101, Avenue Gustave Eiffel, Tours
RL   37097, France
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FH   Key             Location/Qualifiers
FH
FT   source          1..797
FT                   /organism="Coffea canephora"
FT                   /mol_type="mRNA"
FT                   /tissue_type="young leaves"
FT                   /note="derived from dbEST EE194854"
FT                   /db_xref="taxon:49390"
FT   gene            1..>797
FT                   /gene="GT1"
FT                   /note="represents coffee unigene SGN-U354294"
FT   5'UTR           1..99
FT                   /gene="GT1"
FT   CDS             100..>797
FT                   /codon_start=1
FT                   /gene="GT1"
FT                   /product="putative galactosyl transferase"
FT                   /note="CcGT1; glycosyl transferase from family 34"
FT                   /db_xref="GOA:B4YYG2"
FT                   /db_xref="InterPro:IPR008630"
FT                   /db_xref="UniProtKB/TrEMBL:B4YYG2"
FT                   /protein_id="ACF33172.1"
FT                   /translation="MTRIKVHTKAPTFFRDCRSFILAVLVAILLFYALWSFTETAWTNL
FT                   SVSTIFSNTTTDHCTSQPQSLNRTHDPPEPTFYDDPELCYTLDKPIDNWDDKRKSWLKL
FT                   HPSFADNIQDRILLLTGSQPSPCKSPIGDHLLLRGFKNKADYCRIHGYDIFYSNACFDP
FT                   KLCNVWAKVAVIRASMVAHPEAEWIWWMDSDAIITDMDFKIPLQRYKEHNLVVPGWPNL
FT                   VYEKKSWVAV"
XX
SQ   Sequence 797 BP; 211 A; 255 C; 147 G; 184 T; 0 other;
     atgaaatcct aaagccctct ccactctccc gtctccactc acttctccga atctccagac        60
     taattccaca tttctactcc gtatccatac gcagcagcta tgaccagaat caaggttcac       120
     accaaagcgc cgacattttt cagagattgc aggtccttca tcctcgctgt attagtcgcc       180
     attctactct tttatgctct ctggtccttc actgaaactg cttggacaaa cttatccgtc       240
     tccaccattt tttcaaacac caccaccgac cactgcactt cccaacccca atccctcaac       300
     cgaacccacg acccgccaga acccacgttt tacgacgacc cggaactctg ttacacccta       360
     gacaagccca tcgataactg ggacgacaag agaaaatcat ggctgaaact tcacccctcg       420
     tttgccgaca acatccaaga ccgcatactc ctcctcacag gatcacagcc ctcaccctgc       480
     aagagcccca tcggcgatca tctactcctc agaggtttca agaacaaagc cgactactgc       540
     agaatccacg gctacgatat cttctacagt aatgcttgtt ttgatccgaa attgtgcaac       600
     gtctgggcta aagtagctgt aattcgagct tccatggtgg cccacccgga agccgagtgg       660
     atctggtgga tggactcgga tgccatcatc accgacatgg acttcaaaat tccgttacag       720
     aggtacaagg agcacaatct cgtggtaccc ggctggccca acttggttta cgagaagaag       780
     agctgggtag ccgtaaa                                                      797
//
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