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EBI DbfetchID EU646186; SV 1; linear; genomic RNA; STD; VRL; 7129 BP. XX AC EU646186; XX DT 07-MAY-2008 (Rel. 95, Created) DT 15-AUG-2008 (Rel. 96, Last updated, Version 2) XX DE Whitewater Arroyo virus segment L, complete sequence. XX KW . XX OS Whitewater Arroyo virus OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus; OC New world arenaviruses. XX RN [1] RP 1-7129 RX DOI; 10.1016/j.mib.2008.06.001 RX PUBMED; 18602020. RA Charrel R.N., de Lamballerie X., Emonet S.; RT "Phylogeny of the genus Arenavirus"; RL Curr. Opin. Microbiol. 11(4):362-368(2008). XX RN [2] RP 1-7129 RA Emonet S.F., de Lamballerie X.N., Charrel R.N.; RT ; RL Submitted (14-APR-2008) to the EMBL/GenBank/DDBJ databases. RL MIND, The Scripps Research Institute, 10550 North Torrey Pines Road, La RL Jolla, CA 92037, USA XX FH Key Location/Qualifiers FH FT source 1..7129 FT /organism="Whitewater Arroyo virus" FT /segment="L" FT /strain="AV 9310135" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:46919" FT CDS 76..363 FT /codon_start=1 FT /product="Z protein" FT /db_xref="GOA:B2ZDY1" FT /db_xref="InterPro:IPR003224" FT /db_xref="UniProtKB/Swiss-Prot:B2ZDY1" FT /protein_id="ACD03599.1" FT /translation="MGLRYSKDVKDRYGDREPEGRIPITLNMPQSLYGRYNCKSCWFAN FT KGLLKCSNHYLCLKCLTLMLRRSDYCGICGEVLPKKLVFENSPSAPPYEA" FT CDS complement(440..7099) FT /codon_start=1 FT /product="L protein" FT /note="polymerase" FT /db_xref="GOA:B2ZDY2" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR010453" FT /db_xref="InterPro:IPR014386" FT /db_xref="UniProtKB/Swiss-Prot:B2ZDY2" FT /protein_id="ACD03600.1" FT /translation="MVDCNDRINELKDLIRKWVPDEEAYTEQKTTFLSQVNPSSIITEG FT LKLLSMLIEIDSCLKHGCVFNRNKTVNQILKDHRIIGPTLPDVVPDGYRVSGSTIILLE FT TFVRVNQESFEQKYKHDFEKLIQLSKDLSKCGLILVPVIDGRSNYYVDRFPDWVVERIR FT WLLLKLMDNVKDTGERIEELEYNRLISSLSSMENQNLGLESLKALREEGLDYKTKLMEA FT IRDGIRPNLTASECRIGIAKVYDQFCLLRDSGQYQNVYCRTSRSEMIEWLKDHKLTSLI FT NGSEGTFFNNERCGFCQNHMLRVIAELVHSKRVSSNYTPTNDKEISRHKKLLSDCNKIK FT GLKVLNTRRHTLLCLDVIVLNSLIEMIKLKINSSQFLINNHFKSVNDRLLSVDLIINKL FT EKKLLKQPDWLGNVKGKLSKRIKPYNLDYVITWLKELDYEFWYEFKFEREHSARYEKPT FT LRYKRQSERVCYQVEFGTDKIFNEEVFLEYLDALSSLSLGMMNSMKTSSATKLVINDEK FT SFYGTVQCEECYFQDLDSSYNSILLYQKTGEKSRCYGLMLNDDELSDVYRVGQSFYADP FT KRFFLPIMSSNVILKTCEEMLSWLDWLTNEETNMIRTKLFTLVINVLTVPSKRVQIYLQ FT GFRYFIMAFVNEFHFKRLNEKLSVQALTSAEHHVFVLMDELVVCLLEEALEENMAKIFK FT FVLNLSYLCHFITKETPDRLTDQIKCFEKFLEPKLQFGSAFVNLDSSPSLPKEIEDKFV FT KDINNLFSKDLHTNDLESPGLSKEILSLCTSCFNCGMLTVGKVLQNDPQSPSFSSTALD FT ISSNKSVVVPKLDEVGEIITHYDYQNLLSSVVVEMAQSFKDKLRYKLDRKSVQYAIYRR FT LTNMVLTKNLNEKNHINENCEDFEEFLDEDTCRLISDIESNVLECLSNMATPPVRKVIK FT GQEITQRYEGPDLLGRLWSRELMGPILAETSLHEVKDFDPSIFSFETYQELCELIFNSE FT LKEQFFLDDVLRFCPLELLVKNLTTKNFIEKDFFECFKYILISAGFDNRVGRYDHRSRS FT RLGFKDAAYHVKEKSRISLRESNSEAVSKRLDKSFFTNSSLRNLCFYSEESPTFQSTVS FT SSTGKLKFGLSYKEQVGSNRELYVGDLNTKLTSRLIEDYFESITSESKFSCLNNDSEFE FT KAILDMKSVVRLSGLAVSLDHSKWGPYMSPAIFNSLFTSLDLQLRDGSLIDKSPIENLL FT NWHLHKLVEVPYNVIEAYLKGYTKRGLGLMDKMSSTVCEDFIFNWFAKGQVPSHISSVL FT DMGQGILHNTSDYYGLVTEQFIMLCLELCFDVRMTAYTSSDDEIMLSNSHSLKDKSDES FT LDIQKCGELLEFHYYLSSKLNKFVSPKTVAGSFASEFKSRFFIWSQEVPLLTKFVAAAL FT HNVKAKSPHQLAETVDTILDQCVANGVSIKIIKEISKRTNRLISYSGHPIDPFLCVVET FT DLKDWVDGSRGYRLQRSIESIIADDKQLSIIRNSCKKLFYKIRSGDIQEEYLVNALQSS FT PDDCLRQMLRITEVDDQTIEKLIEIRWLNLRAFGDLRLVLRTKIMSGTRILDREEVPSL FT IRSVQSKLSKNFVRGAKKIVTDAINKSAFQSSVCSGFIGVCKSMGSKCVRDGSGGFVYI FT KSLLSEVVCHHTCETCKPRFSVYCKSALERISKYSRSLLWDYFSLVFTNACELGNWVFS FT CVETPKKIPSVVNPNFFWCVKPGSHTELEDKVNMNHVLYSIKRNFPDLFDEHIAPFLSD FT LSSLKISWVQRIRFLDLCVAMDMSSECLGVISHIMRRKREESYIVKQNELSLAHMRDST FT PLEGGFQLNSLEICRNFLYQIVFESMLHPVLLTTSQFKKYFWYGEVELLPNDADHDLGQ FT LTQFIMDCKTLNVSRCMSLDDLDVGYVHSKITLSDVFINLSSFIHLLDWGNLCDYESFD FT KIILESGLEQVPIEIGIVVSHVRRSFKFKYDRKTNYHIKCKIIIRKSELIMSKVNGVDI FT LEIEVSEIECFVSGSQGHHISLDGVGLIPLHPLFSGKELIDFNKLLADQSIEFKQVSSV FT FQKVKLDFKQHVKELRNKFSYKFQGPEQGLSPLHLYRGQIIERDTIVSRLDVPVTSKSV FT FLALEALDAADHTPFLKSLHTYMKTRMSKSNPCFIRMTQEDLCLLIESYEVAFANILKS FT ESDWVEFGDFALCFSNSLNCIMIADDGGQFKLKGRKCRSASTNPRPLEIE" XX SQ Sequence 7129 BP; 2165 A; 1531 C; 1162 G; 2271 T; 0 other; cgcaccgggg atcctaggct actctggaga ttgcgccatt tgacgacttt atcacaacaa 60 gttgtgatta tcacaatggg gctcagatat tccaaggatg tcaaagatcg atatggtgat 120 agagagccag aagggagaat tccgattaca ttgaatatgc ctcaaagcct ttatggcaga 180 tacaattgca agtcttgttg gtttgccaac aaaggtctcc tcaaatgtag caatcactac 240 ctgtgtctaa agtgtctcac attgatgctc agaaggtcag actactgcgg aatctgtggt 300 gaagttcttc caaagaaact ggtgttcgaa aactcaccat cagccccccc gtacgaggcc 360 tagagccacg gggccccagg gcacaccccc agtcgggggt gtgccctcgg ggcccccggg 420 gccgggggcc ccgggttgtt cactctattt ctagcggtct tgggtttgtg gaggcacttc 480 tgcacttcct acccttgagc ttgaattgtc ccccatcgtc agcaatcata atacaattga 540 ggctgttgct gaaacataga gcaaaatcac cgaattcaac ccagtctgat tccgatttca 600 atatatttgc aaaggcaact tcataggatt caatcaataa acacagatct tcctgtgtca 660 tgcggatgaa gcacggattg ctcttgctca tccttgtttt catgtaggta tgaagtgact 720 tgagaaaagg tgtatgatct gctgcatcta gggcttccag tgcaaggaac actgattttg 780 acgttactgg gacatcaagt ctagagacaa tggtgtctct ttctatgatt tggcctctgt 840 acaggtgtag tgggctgagt ccttgttctg gtccttggaa tttataagaa aacttgttcc 900 tcaattcttt cacgtgctgt ttaaaatcaa gtttgacctt ttgaaatact gatgatacct 960 gtttaaattc aatagattga tctgcaagaa gcttgttgaa gtcaatgagt tcttttccag 1020 aaaacagagg gtgcaatggg attaggccca caccatccag gcttatgtga tgcccttgtg 1080 acccgctaac aaaacattca atctcagaca cttcaatttc cagaatgtca accccgttca 1140 ccttgctcat aatcaattca ctttttctta tgataatttt acatttaatg tgataattag 1200 tttttctgtc atatttgaac ttaaaacttc tcctgacatg tgatacaact atgcctatct 1260 caataggtac ctgttcaagt cctgattcta agataatctt gtcaaatgac tcataatcac 1320 ataaattccc ccagtcaagt agatgtatga agctactcag gtttataaat acatcactaa 1380 gagtgatttt actatgcaca tatccaacgt ctagatcatc caggctcatg cacctagaaa 1440 catttaaagt tttgcagtcc atgatgaact gagtgagctg acctaaatca tgatctgcat 1500 cattaggaag gagttctact tcaccatacc aaaagtactt tttaaactga gaagtggtta 1560 atagtaccgg gtgtaacatt gattcgaata caatttgata caaaaaattt ctacagatct 1620 caagtgaatt tagctgaaag ccaccttcga gaggagttga gtctctcatg tgagccaatg 1680 ataactcatt ctgtttcact atgtatgact cctctctttt gcgcctcatg atgtgagaaa 1740 tgactcccaa acactcacta gacatatcca ttgcaacaca gagatccaaa aatcttattc 1800 tttggaccca agatattttt agagaactta ggtctgataa aaagggtgca atgtgctcat 1860 caaaaagatc agggaaattc cttttaatag aatagagcac atgattcata ttcactttat 1920 cctccaactc agtatgactc cctggcttaa cacaccagaa aaaattagga ttcactacac 1980 ttgggatttt tttaggtgtt tctacacatg aaaagaccca gttccccaat tcgcaggcat 2040 ttgtgaatac cagtgaaaaa taatcccata agagtgacct tgagtactta gagattcttt 2100 ccagtgcaga cttacagtaa acgctaaacc taggtttgca ggtttcacaa gtatggtggc 2160 acacaacttc acttagcaat gattttatat acacaaatcc accagaccca tctctgacac 2220 acttggaacc catactcttg cacacaccta tgaacccaga acaaacactg ctttgaaatg 2280 cagatttgtt gattgcatct gtaacaatct ttttagctcc tctcacaaag ttttttgaga 2340 gttttgactg aacagatcta ataagagatg gcacctcttc cctatccaag attcttgtgc 2400 ctgacataat cttagttctt aagacaagtc ttaagtcacc aaaggccctc aggttcaacc 2460 acctaatctc aattaatttc tcaattgtct gatcatcaac ctcagttatc ctcaacattt 2520 gcctaaggca atcatcagga gaggattgga gagcattcac aagatattct tcttgtatgt 2580 ctcctgacct aattttataa aaaagttttt tacaagagtt tctgataatc gacagttgtt 2640 tgtcatcagc aataattgat tcaattgatc tttggagacg ataaccccta gatccatcca 2700 cccagtcctt caaatctgtc tcaacaacac acagaaaggg gtcaattgga tgaccactgt 2760 aacttatcaa tctattagtc cttttagaaa tttcttttat aatcttgatt gagacgccat 2820 tagctacaca ttgatccaga attgtgtcca cagtttcagc cagttgatgg ggtgattttg 2880 ccttcacatt atgcaatgca gctgcaacaa actttgttaa taaaggaact tcttgtgacc 2940 aaatgaaaaa ccttgacttg aattcactcg caaaagaacc tgccacagtc ttaggactaa 3000 caaatttgtt cagttttgaa gacaaataat aatgaaattc taatagttcc ccacactttt 3060 gaatgtccaa tgattcatca ctcttatctt tcaatgaatg tgaattgctc aacatgatct 3120 catcatcact cgatgtgtaa gcagtcattc tcacatcaaa acacaattct aaacacaaca 3180 tgataaactg ttctgttaca agaccataat aatctgatgt gttgtgtaat ataccttgac 3240 ccatgtccaa aacagaagag atgtgagaag gcacttgacc cttagcaaac cagttgaaga 3300 tgaaatcctc acaaactgta cttgacatct tgtccatgag tcctaaacct ctttttgtgt 3360 aacctttaag atatgcctca ataacattgt atggaacttc aaccagtttg tgtaagtgcc 3420 aattgaggag attctcaatg ggactcttat caatcaagct tccatccctc aattgtaaat 3480 caagacttgt gaacaaagag ttgaaaatcg cgggtgacat gtatggaccc cattttgagt 3540 gatccagact cactgctaat cctgagagtc gcacaacaga cttcatatcc aatatcgcct 3600 tttcaaactc agagtcatta tttaaacaag aaaacttact ctctgatgtt attgattcaa 3660 aatagtcctc aatcaatcta ctggtgagct ttgtgttcaa gtcaccaaca taaagttccc 3720 tattactccc aacttgttcc ttatatgata atccaaactt cagctttcct gtactggatg 3780 aaactgttga ctgaaaggtt ggagattctt cagaataaaa acataaattt ctaagggatg 3840 agtttgtaaa aaaactttta tcaagcctct ttgaaactgc ttcagagttg ctctctctga 3900 gacttattct ggatttttcc ttcacatggt atgcagcatc tttaaaccca agtctggatc 3960 tacttctatg gtcataccta ccaactctat tatcaaaccc agcagatatc agtatgtatt 4020 taaaacattc aaaaaaatcc ttttcaatga agttctttgt cgttaaattt tttacaagca 4080 actctaaggg acaaaacctc aacacatcat ctaaaaagaa ttgctcctta agctcactgt 4140 taaagatcaa ttcacacaat tcctgataag tttcaaacga gaaaattgat gggtcaaaat 4200 ctttcacctc atgtagtgaa gtctcagcta aaatgggtcc catcaactct ctggaccaca 4260 atctccccag caaatcagga ccctcatacc tctgtgttat ttcttgccct ttgataactt 4320 tcctcactgg cggtgtggcc atattgctca agcactcaag gacattggat tctatatcac 4380 tgatcaatct acatgtgtcc tcatcaagaa actcttcaaa atcttcacaa ttctcattga 4440 tgtgattttt ttcattgaga ttctttgtga gcaccatatt agttaatctt ctatagatgg 4500 catattggac acttttccta tcaagcttat accttagttt gtctttaaaa gattgtgcca 4560 tttcaaccac cactgatgac aaaaggttct ggtaatcata atgtgtgatt atctcaccaa 4620 cttcatccag tttaggtaca acaacacttt tgttactaga aatatcaaga gctgtactac 4680 taaatgaggg tgattgggga tcattttgta aaaccttgcc cactgtaagc attccacagt 4740 taaaacagga ggtgcataat gataagattt ccttggacaa acctgggctt tctaaatcat 4800 tggtgtgaag atcttttgaa aaaagattat ttatgtcctt aacaaatttg tcctcaattt 4860 ccttcggtaa actaggtgat gaatccagat tgacaaatgc ggaaccaaac tgtaattttg 4920 gctctaagaa cttttcaaaa cattttattt gatctgttaa tctatcaggg gtttctttgg 4980 tgataaagtg acataaataa gacaaattca acacaaactt gaagatctta gccatatttt 5040 cttctaaagc ttcctccaac aaacatacaa ccaactcatc cattaacaca aatacatgat 5100 gttctgcaga agtcaatgcc tgaacactta acttctcatt caatcttttg aagtgaaact 5160 catttacaaa ggccataatg aaatatctaa aaccttgcaa ataaatttga acccttttac 5220 taggaactgt gagaacgttt ataactaatg tgaatagttt ggtccttatc atattcgtct 5280 cttcatttgt taaccaatct aaccatgata acatttcttc acatgttttc aaaataacat 5340 ttgaactcat gattggtaaa aagaatcttt tgggatctgc gtaaaaactc tgacccactc 5400 tatacacatc agacagttca tcatcattta acatcaggcc ataacacctt gatttctcac 5460 ccgtcttttg atataaaaga atactattat atgagctgtc taaatcttgg aaatagcatt 5520 cctcacattg aactgtccca taaaaacttt tctcatcatt gatcaccagc ttagttgctg 5580 aacttgtttt cattgagttc atcattccta agctcaaact cgataatgca tcaaggtatt 5640 ccaaaaaaac ctcttcattg aaaatcttat ctgttccaaa ttcaacctga taacagacac 5700 gctcactttg ccttttgtat ctcaatgttg gcttttcata cctagcagag tgctcccttt 5760 caaatttaaa ttcataccaa aattcgtaat ctaattcctt caaccatgtt atcacatagt 5820 caagattgta aggtttaatt cttttactta gcttgccttt aacattacca agccagtcag 5880 gttgttttaa taattttttc tctaacttgt tgattattaa atctacagac aacaatctgt 5940 cattaacact tttgaaatgg ttgttgatta gaaattgact gctgttgatt tttagtttaa 6000 tcatctcaat cagactattg agaacaatca catcaagaca aagtagtgtg tgtcttcttg 6060 tattaagaac cttcaaacct tttattttat tacaatctga aagtagtttt ttatgtctcg 6120 atatctcttt atcatttgta ggagtatagt tagatgatac tctcttgctg tggaccaact 6180 cggcaataac ccttaacata tgattctgac aaaaaccaca acgctcattg ttaaaaaagg 6240 tgccttcgct accatttatt aatgaggtca atttatgatc ctttaaccac tcaatcatct 6300 ctgatctaga agttctgcaa tacacgtttt gatattgtcc actatctctt aataggcaga 6360 attgatcata aactttggca attcctattc tacactcgga agctgtaagg ttgggcctta 6420 ttccatctct gattgcttcc atcaactttg tcttgtaatc aagaccctct tctctcagag 6480 ctttaagtga ttcaagtccc aagttttgat tttccatgct ggaaagacta gatatcaagc 6540 ggttgtactc tagctcttca attctttctc cagtgtcttt tacattatcc attaatttga 6600 gtagcagcca tctaatcctt tccacaaccc aatctgggaa ccggtccacg taataatttg 6660 accttccgtc aatcacagga acaaggataa gaccacactt gctcaaatct ttagacaact 6720 gaattagttt ctcaaaatca tgtttatatt tttgctcaaa tgactcctgg ttgactcgaa 6780 caaaggtttc caagagaatt attgtggaac ctgacactct atatccgtct ggaacaacgt 6840 ctggaagtgt tgggccaatt atcctgtggt ccttcaaaat ctgattcact gtcttgtttc 6900 tgttgaacac acacccatgt ttcaagcatg agtctatttc aataagcatt gacagcaact 6960 ttaatccttc agtgataatt gatgaagggt tcacttgaga gaggaatgtt gttttttgct 7020 cagtgtaggc ctcttcatcg ggcacccact ttctaataag atccttgagc tcatttatac 7080 gatcattaca atcaaccatg atcaagaaac gcctaggatc ctcggtgcg 7129 // |
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