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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   EU568117; SV 1; linear; mRNA; STD; PLN; 1626 BP.
XX
AC   EU568117;
XX
DT   23-JUL-2008 (Rel. 96, Created)
DT   09-APR-2009 (Rel. 100, Last updated, Version 2)
XX
DE   Coffea arabica putative galactomannan galactosyl transferase (GMGT1) mRNA,
DE   complete cds.
XX
KW   .
XX
OS   Coffea arabica (coffee)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons;
OC   asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea.
XX
RN   [1]
RP   1-1626
RX   DOI; 10.1093/aob/mcn076
RX   PUBMED; 18562467.
RA   Pre M., Caillet V., Sobilo J., McCarthy J.;
RT   "Characterization and expression analysis of genes directing galactomannan
RT   synthesis in coffee";
RL   Ann. Bot. 102(2):207-220(2008).
XX
RN   [2]
RP   1-1626
RA   Caillet V.;
RT   ;
RL   Submitted (14-MAR-2008) to the EMBL/GenBank/DDBJ databases.
RL   Nestle Research and Development Centre, 101, Avenue Gustave Eiffel, Tours
RL   37097, France
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1626
FT                   /organism="Coffea arabica"
FT                   /mol_type="mRNA"
FT                   /clone="pVC11"
FT                   /db_xref="taxon:13443"
FT   gene            <1..>1626
FT                   /gene="GMGT1"
FT                   /note="CaGMGT1"
FT   5'UTR           <1..14
FT                   /gene="GMGT1"
FT   CDS             15..1361
FT                   /codon_start=1
FT                   /gene="GMGT1"
FT                   /product="putative galactomannan galactosyl transferase"
FT                   /note="similar to Trigonella foenum-graecum alpha
FT                   galactosyltransferase protein of GenBank Accession Number
FT                   CAB52246.1, Arabidopsis thaliana galactosyl transferase
FT                   GMA12/MNN10 family protein, putative Nicotiana benthamiana
FT                   glycosyltransferase of GenBAnk Accession Number CAI11458.1,
FT                   Solanum tuberosum putative glycosyltransferase of GenBank
FT                   Accession Number CAI11457.1, and Lotus japonicum putative
FT                   glycosyltransferase of GenBank Accession Number CAI11456.1"
FT                   /db_xref="GOA:B4YIV8"
FT                   /db_xref="InterPro:IPR008630"
FT                   /db_xref="UniProtKB/TrEMBL:B4YIV8"
FT                   /protein_id="ACE60602.1"
FT                   /translation="MPKHNSLLRTKTSSFFSSCFLYAAGTSASFLLAWAFWSFFSSPAP
FT                   SANPSFSRGLASEAALSCPAGKAGHNRSYDPPDPTFYDDPELSYTIEKTIKNWDEKRRE
FT                   WLEKHPSFAAGAADRILMVTGSQATPCKNPIGDHLLLRFFKNKADYCRIHGYDIFYNTV
FT                   LLQPKMFSFWAKMPAVKAVMLAHPEAEWIWWVDSDTAFTDMDFTLPLDRYKAHNLVVHG
FT                   WPHLIHREKSWTGLNAGVFLMRNCQWSMDFMEEWASMGPQAPEYDKWGVIQRTTFKDKT
FT                   FPESDDQTGLAYLILKEREKWGNKIYMEDEYYFEGYWMEIVGTLENITDAYTGIEKRER
FT                   RLRRRHAERVGESYGKVWEEHLKDAGYGRGSWRRPFMTHFTGCQPCSGDHNQMYSGQSC
FT                   WDAMQIALNFADNQVLRRYGFVHRDLLDTSTVPPLPFDYPASDLVGGAS"
FT   3'UTR           1362..>1626
FT                   /gene="GMGT1"
XX
SQ   Sequence 1626 BP; 387 A; 369 C; 468 G; 402 T; 0 other;
     agacagcagc caccatgcct aagcacaaca gcctcctccg caccaaaacc tcgtcgtttt        60
     tctccagctg ctttctttac gccgccggaa cttccgcttc ctttttgtta gcctgggcct       120
     tctggtcctt cttcagtagc cccgccccat ctgcgaatcc ctctttctcg aggggcctag       180
     cttccgaggc tgccctcagc tgccccgccg ggaaagcggg tcacaaccgg agctacgatc       240
     cgcccgaccc gactttctat gacgacccgg aattgagcta caccattgag aagaccatca       300
     agaactggga tgagaagagg cgggagtggc tcgagaagca tccctcgttc gccgccggag       360
     cagctgacag gattttaatg gtcacgggtt ctcaggcgac gccctgcaag aacccgatcg       420
     gggatcactt gctgttgagg ttcttcaaga ataaggcgga ctactgcagg atccacggct       480
     acgatatctt ctacaacacc gtgctgctgc agccgaagat gttctcgttt tgggcaaaaa       540
     tgcctgccgt gaaagcggtc atgttggccc atccggaggc ggagtggatc tggtgggtag       600
     attcagacac agccttcacc gacatggact tcacgctgcc gctggatcgc tacaaggccc       660
     ataatttagt ggtccacggc tggcctcact tgattcacag ggagaagagc tggacggggc       720
     tgaacgcggg agtgtttctg atgcgcaact gtcagtggtc aatggatttc atggaagaat       780
     gggcgagcat ggggcctcaa gccccggagt acgacaaatg gggcgtgatt cagcggacga       840
     cgttcaagga caagacgttt ccggagtcag acgatcagac ggggttggct tatctgatcc       900
     tgaaagagag agagaaatgg gggaacaaaa tttacatgga ggatgaatat tattttgagg       960
     ggtactggat ggaaatcgtg gggacgctgg agaacatcac cgacgcgtac acggggatcg      1020
     agaagcggga gaggaggttg aggaggaggc atgcagagag agtgggggag agttatggta      1080
     aggtgtggga ggagcacctt aaggacgctg ggtatgggag ggggagttgg aggagaccgt      1140
     tcatgactca cttcacgggg tgtcagcctt gtagcgggga ccacaaccag atgtactctg      1200
     gacagtcttg ctgggatgcg atgcaaattg ctctgaattt tgcagataat caggtgctta      1260
     ggagatatgg gttcgtgcac cgggatttat tggatacgtc caccgtcccg cctctgccgt      1320
     tcgattaccc agcatcggac cttgttggag gcgcttccta gaaatatttt attctaacca      1380
     actgttaagt agttttgtac catcatcgga ggctttacta gtagtatcat tattgattta      1440
     tgaaacggtt agtatcatat agaaagaagg tatatcatat ttatgaaact atactactgt      1500
     tacttaacta gtatcatttt gaaggttatg ggctcttaat agtaagtgat tgcatatgta      1560
     tttcgttttt catttttttg ggcaccctgg agatgtattt tctctgttgt aagttaaaag      1620
     tcgggg                                                                 1626
//
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