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EBI DbfetchID EU260464; SV 1; linear; genomic RNA; STD; VRL; 7107 BP. XX AC EU260464; XX DT 03-APR-2008 (Rel. 95, Created) DT 03-APR-2008 (Rel. 95, Last updated, Version 1) XX DE Chapare virus strain 810419 segment L, complete sequence. XX KW . XX OS Chapare virus OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus; OC New world arenaviruses; unclassified New world arenaviruses. XX RN [1] RP 1-7107 RA Erickson B.R., Albarino C., Nichol S.T.; RT "Chapare virus, a newly discovered arenavirus isolated from a fatal RT hemorrhagic fever case in Bolivia"; RL PLoS Pathog. 4(4):e1000047-e1000047(2008). XX RN [2] RP 1-7107 RA Erickson B.R., Albarino C., Nichol S.T.; RT ; RL Submitted (02-NOV-2007) to the EMBL/GenBank/DDBJ databases. RL Special Pathogens Branch, Centers for Disease Control and Prevention, 1600 RL Clifton Road, Atlanta, GA 30333, USA XX FH Key Location/Qualifiers FH FT source 1..7107 FT /organism="Chapare virus" FT /segment="L" FT /host="Homo sapiens" FT /strain="810419" FT /mol_type="genomic RNA" FT /country="Bolivia:Samuzabeti, Chapare Province, Cochabamba FT Department" FT /isolation_source="human sera" FT /collection_date="2003" FT /db_xref="taxon:499556" FT primer_bind 1..19 FT CDS 73..369 FT /codon_start=1 FT /product="Z protein" FT /db_xref="GOA:B2C4J2" FT /db_xref="InterPro:IPR003224" FT /db_xref="UniProtKB/Swiss-Prot:B2C4J2" FT /protein_id="ABY87070.1" FT /translation="MGNTKTKDRQYQSNSSQPTNTSAPVLLRRQAEPSLYGRHNCRCCW FT FADTNLVNCSNHYLCLKCLNTMLRRSNLCDICGEELPTTIIVPVEPSAPLPGQ" FT CDS complement(442..7068) FT /codon_start=1 FT /product="L polymerase" FT /db_xref="GOA:B2C4J3" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR010453" FT /db_xref="InterPro:IPR014386" FT /db_xref="UniProtKB/Swiss-Prot:B2C4J3" FT /protein_id="ABY87071.1" FT /translation="MDTFLLELKDLVRKYVPELVELSFQKDALLSQVHPRLVLVEGFKL FT LSLLVELESCKVNACRHNFEQKFVDVILSDHGVICPTLPKVTPDGFNLMGKTLILLETF FT VRVNPNDFERKWKADMSKLMSLKDDLARVGITMVPVVDGRGSYNTSYLPEWATERLRWL FT LIEILKGVKATSEIEIEDQEYQRLIHSLAKANNQSMGFENLEFLKRRLLSYDQLLDTSL FT LVGIRNDVRESKIIEELIKIKLWYKTEIFNKGLGKFKRTNKSNLLSDLLKIGLHQDSDT FT INCMFCSCKILELCYTLSNKLSIDHSKEEMKDDEVGGKQPVCISYSSLLSICNKIKGSK FT IFNTRRNTLLFLDLIMLNFIVDEMIQDDSVVDSLRGAGFIIGQMVVLVNDRALDILAAM FT KLIRHKLGNSKDWLSVCGKVLKRYDEEMWKEVKTYIKEPDFDMLFQLAKSLVSERPIMR FT YTVHKDNESRCLHQNSLNISDQSFKAMLKALSHVSLSLINSMKTSFSSRLLINEKDYSR FT YYGNVRLKECYVQRFPISSRVTGYLFYQKTGERSRCYSLYISENGELSELGSFYCDPKR FT FFLPVFSEDTIVSMCNEMVCWLDFDEQLVELVKPKLRSLVLLLLCSPSKRNQTFIQGLR FT YFIMAYANQAHHVDLMSKLEIECKSSSEIQLQRLAVTLFELVLSTGDDKDFGFARRFKF FT LLNISYLCHFVTKETPDRLTDQIKCFEKFLEPKLNFNSVIVNPSLSGILTEAQEEIMTS FT SVNRFFQKNLTNISDVKEPGVSKELISFCVSLFNRGKLRVSGDLKVDPFRPSFTSTALD FT LSSNKSVVVPKLDELGNALSKYDKQMMISSCVTTLTEMFKTKGRYNLDPDSLDFLVLKN FT LSNLVSVSVSKGQMKEELSLLYDTLSEEQLESFEQIKQDVQLTLSRMKESKCNNVGLGN FT SRKVNKHLSKSELLETLWSPYQVLRAIKNEVSIHEIKDFDPDIIEHETVKKLCDEVYQS FT SNKLEFFLEEPLKSVPLEFLLKNLTTIAYEETDYLECFKYLLIQGGFDQKLGSYEHKSR FT SRLGLSSEALRVQEDARVSTRESNAEAIAKKLDKTFFTSAALRNLCFYSEDSPTEFTSV FT STNTGNLKFGLSYKEQVGSNRELYVGDLNTKLMTRLVEDFSEMITSSMRYSCLNSEKEF FT ERAICDMKMAVNNGDISMSLDHSKWGPHMSPALFYSFLANLNLTEPKSRAKLNLGPLLD FT ILKWHLHKVVEVPFNVAQAYCVGKIKRSLGLMECQTSSVTEQFYHNFLQRENEIPSHIM FT SVLDMGQGILHNLSDLYALITEQFLNYAIYKLYDVDVLSYTSSDDQISIMKLPAYEHID FT EDSPDWLEIVCFHEYLSSKLNKFVSPKSVVGNFVAEFKSRFFVMGEETPLLTKFVAAAL FT HNVRCKTPTQLAETVDTICDQCVANGVSVSIVSKISERVNRLVKYSGFGETPFLSVVKQ FT DVKDWSDGSRGYRLQRNIENSLRDSKILEVMRKGARKVFLGIKNGRIFEENLIGLIGRG FT GDEALRGFLLYAEVDKDEIENALRYRWVNTSTFGDLRLVLRTKIMSSKRVLERESIPSL FT VKTLQSRMSKNFTKGAKKILAESINKSAFQSSVASGFIGFCKSMGSKCVRDGSGGFIYL FT KDIYKKITTCECKHCSVWRGVVYCEKSVEKIFQFTRSIMWDYFTLVLTNACELGEWVFS FT SVKLPTKATILDNPNLFWAIKPRTHKHIEDRLGLNHILHSIKKNYPQLFEEHLAPFMSD FT LQSNQMINPSKIKFLDICVALDMVNENLGIIGHLLRGRNNTIYIVKQSECAGAHVRQAD FT YVDQDLGLSPQQICYNFKVQFLLSSMINPLIVSTSTLRSFFWFNEVLSIEEDDQIELGE FT LTDFTLSIKTYNLERAMTLDDMTMGYVCSTLLDEVVSLESLDSCQDLAALQFKRQDLSD FT FFRDLGEDFVKVGLNIQIVHQRRSTKFDISRKVVYTFRILLLINLSEHLREEVKIPVQS FT LSLYASGAGNNHLFLDGVSMIPTLPLFNGSKSVNLAKVLIEHELATSNDFKLLECVIMD FT FSNFLDELRDKYSYVLVGPEEQENPIVFQNGAFMADNQKLSYMRVEIFGDTIVKALGAL FT ETDREIENLLCNLWPYLKSIKKTIDFNQADFEMIYDLHRTALLKSLCQMDSWIEFTSFS FT VAYSKHLQDLVVSDNLGNLRLKGITCRPFRRDQCIQEIE" FT primer_bind complement(7089..7107) XX SQ Sequence 7107 BP; 2148 A; 1575 C; 1171 G; 2213 T; 0 other; cgcacagtgg atcctaggcg ttactaggtc ttcaattctt gaactaattg ttttcgggtt 60 tctactcaag ctatgggtaa caccaaaaca aaggacagac agtatcaatc gaactcaagc 120 caacccacaa acacatctgc accagttctg ctgagaaggc aggcagaacc aagtctgtat 180 gggagacaca actgcagatg ctgttggttt gcagacacaa acctagtcaa ttgttccaac 240 cactaccttt gccttaaatg tctgaacaca atgttaagaa gatccaatct ctgtgacata 300 tgcggtgaag aacttcccac aacaatcatt gttccagtgg aaccatcagc accactgccc 360 ggacaataag gcatcctcga atgcccccgg ggggccccaa tggggccccc cgcggggagt 420 ccccgggggc gaatgtggag cttactcgat ctcctgaata cattggtctc ttctgaaggg 480 ccgacaggtg atgcctttca accttaggtt acctaggttg tcactgacaa ccaaatcctg 540 taggtgctta ctataagcta cactgaaact agtaaactct atccaactat ccatttggca 600 tagagacttt aacaaagcag ttctatgcaa atcataaatc atctcaaagt ctgcttgatt 660 aaaatcaatt gttttcttta tggatttcaa atatggccag agattgcata gcaagttttc 720 aatttctctg tctgtctcca gtgctccaag agctttcaca atggtatcac caaaaatctc 780 caccctcatg tatgatagct tctgattatc agccatgaag gcaccatttt ggaacacaat 840 ggggttttcc tgttcttccg gcccaactag aacgtaagag tatttgtccc tcagttcatc 900 caaaaagttt gagaagtcca tgatcacgca ttctaacaat ttaaaatcat tggatgttgc 960 caactcatgt tctattaaaa cttttgctaa attcacactc tttgatccat taaagagagg 1020 cagtgtaggt atcattgaga caccatctag aaaaaggtgg ttgtttccgg caccagaggc 1080 atacaaactc aaagattgta ctggaatttt tacctcttct cttaaatgtt cactcagatt 1140 tattaaaagc agaatcctaa aagtgtacac aacttttctt gaaatgtcaa actttgttga 1200 tctcctctga tgaacgatct gaatgtttaa ccccacttta acaaagtctt ctccaagatc 1260 cctgaaaaaa tcagacaaat cctgcctctt aaactgtagt gctgccaaat cttgacaaga 1320 atcaagggat tctaagctga ctacttcgtc taataaagtt gaacaaacat agcccattgt 1380 catgtcatcc aaagtcatgg ccctctcaag attgtatgtc ttaatagaga gtgtgaagtc 1440 tgtgagttcc cccaattcta tttgatcatc ttcctcaatg cttaaaacct cattaaacca 1500 aaagaaagac ctcaaagttg aagtggacac aatgagaggg ttaatcattg aggaaagcaa 1560 aaattggacc ttaaaattgt aacaaatttg ctgtgggctt aaacccagat cttggtcaac 1620 ataatcagct tgtcgtacat gagcaccagc acactcactt tgtttaacaa tgtatatggt 1680 gttatttctc cctctcagga ggtgaccaat tatccccaag ttctcattta ccatatccaa 1740 tgccacacaa atgtcaagaa actttatctt cgatggattt atcatctgat ttgattgaag 1800 atcactcata aatggagcca gatgttcctc aaacaattga ggataattct tctttatcga 1860 atgtagtata tgattcaaac caagcctatc ctctatgtgt ttgtgtgttc tgggttttat 1920 tgcccagaaa agattggggt tatccaaaat ggtagcctta gttggaagtt ttacgcttga 1980 gaaaacccat tcacccaact cacaggcatt ggttaaaaca agtgtgaaat aatcccacat 2040 aattgacctt gtaaactgga agatcttttc cactgatttc tcacagtaca caacacccct 2100 ccacactgaa caatgtttac attcgcacgt agtgatcttc ttgtaaatgt ctttcaagta 2160 gatgaaacca ccacttccat cccttacaca cttgcttccc atactcttgc agaatcctat 2220 aaaccctgag gccactgatg attgaaaagc agatttattt atagactccg ctaatatctt 2280 ctttgcccct ttcgtaaagt tttttgacat tcttgattgt aaagtcttca ctagactcgg 2340 gatgctttcc ctctctaaaa ctcttttact tgacattatc ttggtcctta agactaacct 2400 cagatcacca aatgttgatg tgttcaccca tctgtatctc aatgcgttct caatctcatc 2460 cttatccact tcagcatata aaagaaaacc tcgcaaggcc tcatcacctc ccctacctat 2520 caagccaatt aagttctctt caaagatacg tccatttttt attcctagaa acactttcct 2580 agcacctttt ctcatcactt ctaaaatttt agaatctctg agggagttct ctatattcct 2640 ctgcaaacga tagcctctag aaccatcaga ccaatctttt acatcttgtt tcaccaccga 2700 aaggaatggt gtttctccaa agcctgaata cttaactaac cgattgactc tctctgaaat 2760 tttagaaacg atggaaacac taacaccatt tgcgacacat tggtcacaaa tggtatctac 2820 agtttctgcc agctgtgtgg gtgttttgca cctgacattg tgaagagcag ctgcaacaaa 2880 cttagttaac aatggagttt cttcccccat aacaaagaac ctcgacttga actccgccac 2940 aaagttccca acaacacttt tgggactgac aaatttgttc aactttgatg atagatattc 3000 atgaaaacat acaatttcca accagtcagg gctatcctcg tctatgtgct catatgcagg 3060 caatttcatt atagatatct gatcatcact ggaagtgtaa gataacacat ccacatcata 3120 cagtttgtaa attgcatagt tgagaaactg ttccgttatt aaagcatata agtcagataa 3180 gttgtgtaaa attccttgtc ccatatctaa tacagacata atgtgacttg gaatttcatt 3240 ttccctttgt aagaagttgt ggtagaactg ttctgttaca cttgatgttt gacattccat 3300 gagcccaaga cttcttttga ttttccccac acaatatgcc tgagcaacat taaatggtac 3360 ctcgacaact ttatgaagat gccatttaag gatgtccaat agtggtccaa gattcaactt 3420 agctctactt ttgggttctg tcaaattgag attggctaaa aaggaataaa ataatgcagg 3480 gctcatgtgg gggccccatt ttgaatgatc caatgacata ctaatatcac cattgttcac 3540 agccatcttc atgtcacaga tggccctctc aaactctttc tctgaattta aacacgaata 3600 tctcatagat gatgtgatca tttcagaaaa atcctctact aatctagtca ttaattttgt 3660 attcaagtca ccaacataaa gctccctgtt agatccaact tgctccttat aacttaatcc 3720 aaattttaga tttcctgtat ttgtgcttac gcttgtgaac tctgtcggtg aatcttctga 3780 gtaaaaacag aggtttctta gagctgcact tgtaaaaaac gttttgtcaa gctttttggc 3840 tatggcctct gcattgcttt ctcttgtgct cactcgggca tcttcctgca ctctaagtgc 3900 ttctgaactc aaacctaatc tagacctact tttgtgctca tagctaccta atttttgatc 3960 aaaaccccct tgtatcagca aatacttgaa acactctaag tagtcagttt cctcataagc 4020 aatagttgtt agatttttta acaaaaattc aagtgggaca gatttcaaag gttcctctaa 4080 gaagaattct aacttgttac tggactgata cacctcgtca cacaactttt ttacagtttc 4140 gtgttcaata atatcaggat caaagtcttt aatctcatga attgaaacct catttttaat 4200 agccctaaga acctggtaag gtgaccagag tgtttccagc agctcacttt tgctaaggtg 4260 cttattgact ttcctagaat ttcctaaacc tacattatta cactttgatt ctttcattct 4320 acttaaagta agctgaacat cttgcttgat ctgctcaaat gattccaatt gttcttctga 4380 taatgtgtca tacaacaagg atagctcttc tttcatttga ccttttgaaa cactcacact 4440 aactaaattg gaaaggttct tgaggaccaa gaaatctaag gaatctgggt ccaagttgta 4500 ccttcccttc gttttgaaca tttcagtaag agttgttaca caagatgaga tcatcatttg 4560 tttgtcatac ttgcttaagg cattacccaa ctcatctaac ttagggacaa caacactttt 4620 attactagat aagtccaaag cagtactagt gaatgatggg cgaaaagggt caacttttag 4680 atcaccagac acccttaact ttcccctgtt aaaaagggaa acacagaaac tgattaattc 4740 cttagagact cccggttctt taacatctga tatgttagtc aaatttttct ggaaaaacct 4800 gttaacgcta gatgtcataa tctcttcttg ggcttctgtt aaaatcccgc ttaaagaagg 4860 attaactatg acactgttaa aattcagctt tggctcaagg aatttctcaa aacacttgat 4920 ctgatcagtt aatctatctg gtgtctcctt tgtcacaaaa tgacacagat aactaatatt 4980 cagtaaaaac ttaaaccttc tggcaaagcc aaaatcttta tcatcccctg ttgataagac 5040 caattcaaac agtgtcactg ctaacctttg caattgaatc tctgaactgg acttacactc 5100 aatctctaat tttgacataa gatcaacgtg atgagcctga ttagcgtaag ccattataaa 5160 atatctcagc ccttggataa atgtttggtt cctttttgaa ggtgagcaga gaaggagcag 5220 caccaaggat ctcagcttag gcttaaccag ctcaacaagt tgttcatcaa agtccaacca 5280 gcataccatt tcattgcaca tggacactat agtgtcttca gaaaaaacag gcaaaaagaa 5340 tctctttgga tcacaataaa aggatcctag ctcacttaat tcaccgtttt cagagatata 5400 aagagaataa caccttgatc tctcacccgt cttttgataa aataggtagc ctgtgactct 5460 acttgagatg gggaacctct gaacataaca ttccttgagc ctgacatttc cataatagcg 5520 agaatagtcc ttttcattaa ttaaaagtct agaggaaaaa gatgttttca tggaattgat 5580 cagagagagt gaaacatgtg acaaagcttt gagcatggct ttgaaacttt ggtcagagat 5640 attcaacgag ttttgatgga gacatcggct ttcgttgtcc ttatggacag tataacgcat 5700 tatgggtctt tcagaaacta aactctttgc caattggaag agcatgtcga agtcaggttc 5760 tttaatgtaa gtcttgacct ctttccacat ttcttcatca taccttttca aaactttccc 5820 acacacggac agccagtcct tactattccc taatttatgt cttatcagct tcattgctgc 5880 aaggatatca agagctctat cattgaccag gaccaccatt tgaccaatta taaaaccagc 5940 acccctgaga gaatctacca ctgagtcatc ttgtatcatt tcatccacaa tgaaattcag 6000 catgattagg tccaaaaaca gcaatgtatt tctcctagta ttgaagattt ttgaaccttt 6060 aatcttattg caaattgata ataaagaaga ataggaaatg cacactggct gcttacctcc 6120 aacctcatca tccttcattt cttcttttga atgatctatt gacagtttgt tggaaagtgt 6180 gtaacagagc tccagaattt tgcatgaaca aaacatgcaa tttatagtat cactatcttg 6240 atgcagacca attttcagaa gatcagataa taaattagac ttattagttc ttttaaattt 6300 ccctaaacct ttattaaaaa tttcagtctt ataccagagt ttgattttga tcagttcctc 6360 aattattttc gattctctca catcatttct tatacccact aataacgatg tgtctagcaa 6420 ttgatcatat gatagcagcc ttctctttag aaactctagg ttttcaaacc ccatactttg 6480 attattggct tttgccaaac tgtgtatcag cctttggtat tcctgatctt caatttctat 6540 ttctgaagtt gctttcaccc ctttcaagat ttcaatcaat agccatctca acctctcagt 6600 agcccattcc ggaagataac ttgtgttgta acttcctctt ccatcaacaa caggaaccat 6660 ggtgatgcca actctagcaa ggtcatcttt taatgacatg agtttgctca tatcagcttt 6720 ccacttccgt tcaaagtcat ttgggttgac tcttacaaaa gtttccaata agatgagagt 6780 cttacccatg agattgaaac catcgggcgt cactttggga agagtgggac agatcacacc 6840 atgatcagag aggatgacat ccacaaactt ttgctcaaag ttgtgtctgc aggcattgac 6900 cttgcaagac tccagttcaa ctaaaagtga caacaatttg aagccctcaa caaggaccag 6960 tctggggtgc acctgtgaaa gaagtgcgtc tttctggaaa gatagctcta ctaattctgg 7020 gacatacttt cttacaagat ccttcaattc cagtaaaaaa gtgtccatta ttcacttaga 7080 caaaattcgc ctaggatcca ctgtgcg 7107 // |
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