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EBI DbfetchID EF583035; SV 1; linear; genomic RNA; STD; VRL; 2508 BP. XX AC EF583035; XX DT 18-MAR-2008 (Rel. 95, Created) DT 26-MAR-2008 (Rel. 95, Last updated, Version 2) XX DE Human rotavirus A genotype G12P[4] capping protein VP3 gene, complete cds. XX KW . XX OS Human rotavirus A OC Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Rotavirus; Rotavirus A. XX RN [1] RP 1-2508 RX DOI; 10.1128/JVI.02492-07 RX PUBMED; 18216104. RA McDonald S.M., Patton J.T.; RT "Molecular characterization of a subgroup specificity associated with the RT rotavirus inner capsid protein VP2"; RL J. Virol. 82(6):2752-2764(2008). XX RN [2] RP 1-2508 RX DOI; 10.1128/JVI.02257-07 RX PUBMED; 18216098. RA Matthijnssens J., Ciarlet M., Heiman E., Arijs I., Delbeke T., RA McDonald S.M., Palombo E.A., Iturriza-Gomara M., Maes P., Patton J.T., RA Rahman M., Van Ranst M.; RT "Full genome-based classification of rotaviruses reveals a common origin RT between human Wa-Like and porcine rotavirus strains and human DS-1-like and RT bovine rotavirus strains"; RL J. Virol. 82(7):3204-3219(2008). XX RN [3] RP 1-2508 RA Heiman E.M., McDonald S.M., Barro M., Taraporewala Z.F., Bar-Magen T., RA Patton J.T.; RT ; RL Submitted (25-APR-2007) to the EMBL/GenBank/DDBJ databases. RL Laboratory of Infectious Diseases, National Institute of Allergy and RL Infectious Diseases, National Institutes of Health, 50 South Drive, MSC RL 8026, Room 6314, Bethesda, MD 20892, USA XX FH Key Location/Qualifiers FH FT source 1..2508 FT /organism="Human rotavirus A" FT /strain="L26" FT /mol_type="genomic RNA" FT /note="lab-adapted genotype: G12P[4]" FT /db_xref="taxon:10941" FT CDS 1..2508 FT /codon_start=1 FT /product="capping protein VP3" FT /db_xref="GOA:B1NKS7" FT /db_xref="InterPro:IPR009697" FT /db_xref="InterPro:IPR011181" FT /db_xref="UniProtKB/Swiss-Prot:B1NKS7" FT /protein_id="ABU87844.1" FT /translation="MKVLALRHSVAQVYADTQVYTHDNSKDEYENAFLISNLTTHNILY FT LNYSVKTLQILNKSGIAAIEIQKMDELFTLIRCNFTYDYIDDVVYLHDYSYYTNNEIRT FT DQHWVTKTNIEDYLLPGWKLTYVGYNGSDTRGHYNFSFRCQNAATDDDAIIEYIYSDEL FT DFQSFILKKIKERMTTSLPIARLSNRVFRDKLFKTLSVNHDKVVNVGPRNESMFTFLDY FT PSIKQFSNGPYLVKDTIKLKQERWLGKRLSQFDIGQYKNMLNVLTTLYQYYDMYHEKPI FT VYMIGSAPSYWIYDVKQYSDLKFETWDPLDTPYSNLHHKELFYINDVQKLKDNSILYID FT IRTDRGNMDWKEWRKVVERQTADNLYIAYKYLSTGRAKICCVKMTAMDLELPISAKLLH FT HPTTEIRSEFYLMMDIWDSKNIKRFIPKGVLYSYINNIITENVFIQQPFKLKTLKNEYV FT IALYALSNDLNNREDVIKLINNQKKALITVRINNTFKDEPKVGFKNIYDWTFLPTDFET FT SESIITSYDGCLGIFGLSISLASKPTGNNHLFILSGTDKYFKLDQFANHMSISRRSHQI FT RFSESATSYSGYIFRDLSNNNFNLIGTNVENSVSGHVYNALIYYRYNYSFDLKRWIYLH FT STGKASIEGGRYYEHAPIELIYACRSAREFAKLQDDLTVLRYSNEIENYINKVYSITYA FT DDPNYFIGVKFKNIPYKYNVKVPHLTFGVLNISEQMLPDAIAILKKFKNELFGMDITTS FT YTYMLSDEVYVANISGVLSTYFKIYNAFYKEQITFGQSRMFIPHVTLSFSNEKTVRIDT FT TKLYIDSIYLRKIKGDTVFDMTG" XX SQ Sequence 2508 BP; 960 A; 348 C; 425 G; 775 T; 0 other; atgaaagtat tagctttaag acatagtgtg gctcaggtat atgcagacac tcaggtttac 60 acacacgata actccaaaga tgagtatgaa aatgcgtttt taatttctaa tctcactaca 120 cataatatat tatacttaaa ttatagtgta aaaacactgc aaatattaaa taaatctggt 180 atagctgcaa tagagataca gaagatggat gagctattca cgctaattag atgtaatttt 240 acatatgact acattgatga cgttgtctac ttacatgact attcatatta tactaataat 300 gaaatacgaa ctgaccaaca ttgggtaact aaaacaaata tagaggatta tctattacca 360 ggatggaagc tgacatatgt cggttacaat ggaagtgata ctagaggaca ttataatttt 420 tcgtttagat gtcagaatgc agctacagat gatgatgcaa taatagagta tatctattca 480 gatgaattag actttcagag ctttatactc aaaaagatca aagaaaggat gacaacatca 540 ctaccaatag caagactttc aaatcgcgta tttagagata aattatttaa aacgttatca 600 gtaaatcatg ataaagtagt taatgttgga cctagaaatg aatctatgtt tactttttta 660 gactatccat caataaaaca gttctcgaat ggaccgtatc tagttaaaga tacgattaaa 720 ctcaaacaag agagatggct tggtaaaaga ttatcacagt ttgatattgg tcaatataag 780 aatatgttaa atgtattaac gactttatat caatattacg atatgtatca tgaaaaacca 840 atcgtataca tgataggatc agcgccctcg tattggatat atgatgtcaa acaatactct 900 gacttgaaat ttgagacatg ggatccacta gacacaccat attctaattt acatcataaa 960 gaattatttt acataaatga cgtacaaaaa cttaaagata attcgatact atatatagat 1020 ataagaacag atagaggaaa tatggactgg aaggaatggc gaaaagtggt ggaaaggcaa 1080 actgctgaca atttatatat tgcatacaaa tatctatcta caggaagagc taagatatgt 1140 tgtgttaaga tgaccgctat ggatttagag ttaccaatat ctgcaaaatt acttcatcat 1200 ccaactacag agattagatc agagttttat ttaatgatgg atatatggga ctctaagaat 1260 attaaaagat tcataccaaa aggtgtatta tactcatata taaataatat aattactgaa 1320 aacgtattca tacaacaacc ttttaagttg aaaacattga aaaacgaata tgtaatagca 1380 ctttatgctt tatcaaatga tcttaacaat agagaagatg tgataaaact aattaataat 1440 cagaaaaaag cgttaataac agtgagaatt aacaacacgt ttaaagatga accaaaagtc 1500 ggatttaaaa acatttacga ttggacgttt ttgccaacgg attttgagac aagtgaatca 1560 attattactt catatgatgg atgtctaggt atttttggtt tatcaatatc gctagcttca 1620 aaaccaaccg gtaataatca tttgttcatt ttaagtggca cagacaagta ttttaaattg 1680 gatcaattcg caaatcatat gagcatatca cgacggtcac atcagatacg gttttcggag 1740 tcagccactt catactcggg atacattttt agggatttgt ctaataataa tttcaactta 1800 ataggtacga atgtagagaa ttcagtgtcc ggacacgtat ataacgcatt gatttactat 1860 agatataatt actcatttga ccttaaacga tggatatact tacattcaac aggtaaagct 1920 agcattgaag gtggtaggta ttatgaacat gctccgatag aattgattta tgcatgtagg 1980 tcagcgagag aatttgcgaa attgcaagat gatttaacgg tattaagata ttcaaatgag 2040 atagaaaact atattaacaa agtttatagt ataacatacg ccgacgaccc caattacttt 2100 attggagtta agtttaaaaa tattccttac aagtataacg ttaaagtacc acatctcaca 2160 tttggcgtgt taaatatttc tgaacagatg ttaccagatg caatagcaat tttaaagaaa 2220 tttaaaaatg aactatttgg aatggatata acaacgagtt atacatatat gttatctgat 2280 gaagtgtatg tagcaaatat aagtggtgta ctatcaacat atttcaaaat ttacaacgca 2340 ttttataaag aacaaatcac atttggacag tcgagaatgt ttattcctca tgtaacgttg 2400 agttttagta atgagaaaac ggtgagaata gacactacaa aactgtacat agattctatt 2460 tatttaagaa aaataaaagg tgacacggtg tttgatatga ctgggtga 2508 // |
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