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EBI DbfetchID EF583023; SV 1; linear; genomic RNA; STD; VRL; 2508 BP. XX AC EF583023; XX DT 18-MAR-2008 (Rel. 95, Created) DT 26-MAR-2008 (Rel. 95, Last updated, Version 2) XX DE Human rotavirus A genotype G1P[8] capping protein VP3 gene, complete cds. XX KW . XX OS Human rotavirus A OC Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Rotavirus; Rotavirus A. XX RN [1] RP 1-2508 RX DOI; 10.1128/JVI.02492-07 RX PUBMED; 18216104. RA McDonald S.M., Patton J.T.; RT "Molecular characterization of a subgroup specificity associated with the RT rotavirus inner capsid protein VP2"; RL J. Virol. 82(6):2752-2764(2008). XX RN [2] RP 1-2508 RX DOI; 10.1128/JVI.02257-07 RX PUBMED; 18216098. RA Matthijnssens J., Ciarlet M., Heiman E., Arijs I., Delbeke T., RA McDonald S.M., Palombo E.A., Iturriza-Gomara M., Maes P., Patton J.T., RA Rahman M., Van Ranst M.; RT "Full genome-based classification of rotaviruses reveals a common origin RT between human Wa-Like and porcine rotavirus strains and human DS-1-like and RT bovine rotavirus strains"; RL J. Virol. 82(7):3204-3219(2008). XX RN [3] RP 1-2508 RA Heiman E.M., McDonald S.M., Barro M., Taraporewala Z.F., Bar-Magen T., RA Patton J.T.; RT ; RL Submitted (25-APR-2007) to the EMBL/GenBank/DDBJ databases. RL Laboratory of Infectious Diseases, National Institute of Allergy and RL Infectious Diseases, National Institutes of Health, 50 South Drive, MSC RL 8026, Room 6314, Bethesda, MD 20892, USA XX FH Key Location/Qualifiers FH FT source 1..2508 FT /organism="Human rotavirus A" FT /strain="D" FT /mol_type="genomic RNA" FT /note="lab-adapted genotype: G1P[8]" FT /db_xref="taxon:10941" FT CDS 1..2508 FT /codon_start=1 FT /product="capping protein VP3" FT /db_xref="GOA:B1NKR5" FT /db_xref="InterPro:IPR009697" FT /db_xref="InterPro:IPR011181" FT /db_xref="UniProtKB/Swiss-Prot:B1NKR5" FT /protein_id="ABU87832.1" FT /translation="MKVLALRHSVAQVYADTQTYLHDDSKDEYENAFLISNLTTHNILY FT LNYSLKTLKILNKSGIAAVEVQSPDELFALIRCNFTYDYENNIVYLHDYSYYTNNEIRT FT DQHWITKTDIIDYLLPGWKLTYVGYNGKNTRGHYNFSFICQNAATDDDIIIEYIYSNEL FT DFQNFLLRKIKERMTTSLPIARLSNRVFRDKLFPSIVNIHKKVINVGPRNESMFTFLNF FT PTIKQFSNGAYIVKHTIKLKQEKWLGKRVSQFDIGQYKNMLNVVTTIYYYYNLYYSKPI FT IYMLGSAPSYWIYDIKQYSDFTFETWDPLDTPYSTTHHKELFFDKDVNKLKDNSVLYID FT IRTDRGNMDWKEWRKIVEQQTVSNLNIAYKYLSTGKAKVCCVKLTAMDLELPITAKLLH FT HPTTEVRSEFYAILDVWDIITIKRFIPKGVFYAFINNVTTENVFIQPPFKLKTSPTDYI FT VALYALSNDFNSRQDVINLINKQKQSLITVRINNTFKDEPKVNFKNIYDWTFLPTDFEL FT KDSIITSYDGCLGIFGLSISLSSKPTGNNHLFIINGTDKYDKLDQYANHMGISRRSHQI FT RFSESATSYSGYIFRDLSNNNFNLIGTNVENSVSGHVYNALIYYRYNYAFDLKRWIYLH FT SIGKVAVEGGRYYEHAPIELIYACRSAKEFAILQDDLTVLRYANEIEGYINKVYSITYA FT DDPNYFIGIKFNSIPYEYDVKIPHLTLGVLFISDNMIHDVITALKKMKTELFKMEISTS FT YTYMLSDNTYVANASGVLSTYFKLYNMFYRNHITFGQSRMFIPHITLSFSNKRTVRIES FT IKLRINSIYLRKIKGETVFDMSE" XX SQ Sequence 2508 BP; 953 A; 338 C; 389 G; 828 T; 0 other; atgaaagtat tagctttaag acacagtgtg gctcaggtgt atgcagatac tcaaacctat 60 ttgcatgatg attcaaaaga tgagtatgaa aatgcatttc tcatttctaa tctaactaca 120 cataatatat tatacttgaa ttacagcctt aaaacattaa aaatattaaa taaatcaggt 180 atagcagcag ttgaggtaca atctccagat gaattatttg cgttaataag gtgtaatttt 240 acgtacgatt atgagaataa catagtttat ttacatgatt attcatatta tactaacaat 300 gaaataagaa cagatcaaca ttggataact aaaactgata taattgacta tctattacct 360 ggatggaaat taacgtatgt aggctataat ggaaagaata cacgaggtca ctataatttt 420 tcatttatat gtcaaaatgc agctacagat gatgatataa taattgaata tatatactcc 480 aatgagttag actttcaaaa ttttctgttg agaaaaatta aagagagaat gaccacatct 540 cttccaattg ctagattatc aaatcgtgta tttagagata aattatttcc atctattgta 600 aacatacata aaaaagtgat aaatgttggg ccgaggaatg aatctatgtt cacattccta 660 aattttccaa ctattaagca attttcaaac ggtgcgtata ttgtgaagca tactattaaa 720 ttgaagcagg agaaatggtt gggtaaaaga gtatcacaat ttgatatcgg acaatataaa 780 aacatgttaa atgtggtcac tactatttac tattactata atttatacta ttcgaaacct 840 ataatataca tgcttggttc agctccatct tattggattt atgatattaa acagtattct 900 gattttacat ttgaaacatg ggatccatta gatactccgt attctacaac acatcataaa 960 gaattatttt ttgataagga tgtcaataag cttaaagata attcagtttt atatatagac 1020 ataagaactg atagaggtaa tatggattgg aaagagtgga gaaaaatagt agaacaacaa 1080 actgttagca atctaaatat tgcatataaa tatctatcaa caggaaaagc aaaggtgtgt 1140 tgtgttaaat taactgctat ggacctagaa ttaccaataa cagcaaaatt acttcatcat 1200 ccaactactg aagttagatc agaattttat gcaatattgg atgtatggga tattattacc 1260 attaaaagat ttataccaaa aggtgtattt tatgctttta taaacaatgt aaccacagag 1320 aatgtgttta tacaacctcc ttttaaatta aaaacgtcac ctactgatta tatagtggca 1380 ttgtatgctt tatccaatga cttcaattca aggcaagatg ttattaattt gattaataaa 1440 caaaaacaat cactcattac tgttcgtata aataacactt ttaaagacga accaaaagta 1500 aattttaaaa atatttatga ttggacgttt ctgccaacag atttcgaact taaagattcg 1560 ataattacat catatgatgg ttgtttaggc atattcggat tatcaatatc tttatcgtct 1620 aaacccaccg gaaataatca tttatttata ataaatggaa ctgacaaata tgataaacta 1680 gaccaatatg caaatcatat gggtatttct agaagatcgc atcaaattag attctcagag 1740 tctgcgacat catattcggg atatattttt agagatcttt caaataataa tttcaatcta 1800 ataggtacta atgtggagaa ttcagtttca ggacatgtct ataatgcatt gatttactac 1860 agatataatt atgcgtttga tcttaaaaga tggatttatc tacattcaat tggaaaagtc 1920 gctgtagaag gtggaagata ttatgaacat gcaccaatcg aattgatata tgcatgtcga 1980 tcagctaaag aatttgctat attacaagat gacttaacgg tattgagata cgctaatgaa 2040 attgaagggt atataaacaa agtatatagt ataacttatg ctgacgatcc caattacttt 2100 ataggaatta aatttaatag tataccttat gaatacgatg ttaaaattcc acatttaaca 2160 ctaggagtat tatttatatc tgataatatg atacacgatg taatcacagc gctgaagaaa 2220 atgaagacag agctatttaa aatggaaatt agtactagtt atacttatat gctatctgat 2280 aatacgtatg tagcaaatgc tagtggtgtg ttatcaactt attttaaatt atataatatg 2340 ttctatagaa atcatatcac gtttggacaa tcacgaatgt ttatcccaca cattacgctt 2400 agttttagca acaaacggac ggttagaata gaaagtataa aactcagaat caattcaatt 2460 tacttaagaa agattaaagg tgagaccgta tttgatatgt ctgagtga 2508 // |
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