 |
|
EBI DbfetchID EF583019; SV 1; linear; genomic RNA; STD; VRL; 2508 BP. XX AC EF583019; XX DT 18-MAR-2008 (Rel. 95, Created) DT 26-MAR-2008 (Rel. 95, Last updated, Version 2) XX DE Human rotavirus A genotype G10 capping protein VP3 gene, complete cds. XX KW . XX OS Human rotavirus A OC Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Rotavirus; Rotavirus A. XX RN [1] RP 1-2508 RX DOI; 10.1128/JVI.02492-07 RX PUBMED; 18216104. RA McDonald S.M., Patton J.T.; RT "Molecular characterization of a subgroup specificity associated with the RT rotavirus inner capsid protein VP2"; RL J. Virol. 82(6):2752-2764(2008). XX RN [2] RP 1-2508 RX DOI; 10.1128/JVI.02257-07 RX PUBMED; 18216098. RA Matthijnssens J., Ciarlet M., Heiman E., Arijs I., Delbeke T., RA McDonald S.M., Palombo E.A., Iturriza-Gomara M., Maes P., Patton J.T., RA Rahman M., Van Ranst M.; RT "Full genome-based classification of rotaviruses reveals a common origin RT between human Wa-Like and porcine rotavirus strains and human DS-1-like and RT bovine rotavirus strains"; RL J. Virol. 82(7):3204-3219(2008). XX RN [3] RP 1-2508 RA Heiman E.M., McDonald S.M., Barro M., Taraporewala Z.F., Bar-Magen T., RA Patton J.T.; RT ; RL Submitted (25-APR-2007) to the EMBL/GenBank/DDBJ databases. RL Laboratory of Infectious Diseases, National Institute of Allergy and RL Infectious Diseases, National Institutes of Health, 50 South Drive, MSC RL 8026, Room 6314, Bethesda, MD 20892, USA XX FH Key Location/Qualifiers FH FT source 1..2508 FT /organism="Human rotavirus A" FT /strain="A64" FT /mol_type="genomic RNA" FT /note="lab-adapted genotype: G10" FT /db_xref="taxon:10941" FT CDS 1..2508 FT /codon_start=1 FT /product="capping protein VP3" FT /db_xref="GOA:B1NKR1" FT /db_xref="InterPro:IPR009697" FT /db_xref="InterPro:IPR011181" FT /db_xref="UniProtKB/Swiss-Prot:B1NKR1" FT /protein_id="ABU87828.1" FT /translation="MKVLALRHSVAQVYADTQIYTHDETKDDYENAFLISNLTTHNILY FT LNYSVKTLQILNKSGIAAVEIQKMDELFTLIRCNFTYDYIEDIVYLHDYSYYTNNEIRT FT DQHWVTKTNIEDYLLPGWKLTYVGYNGSDTRGHYNFSFKCQNAATDDDAIIEYIYSNEL FT DFQNFILKKIKERMTTSLPIARLSNRVFRDKLFKTLVSDHSKVVNVGPRNESMFTFLDH FT PSIKQFSNGPYLVKDTIKLKQERWLGKRLSQFDIGQYKNMLNVLTTLYQYYDMYHEKPI FT IYMIGSAPSYWIYDVKQYSNLKFETWDPLDTPYSDLHHKELFYISDVTKLKDNSILYVD FT IRTDRENMDWKTWRKIVEEQTINNLNIAYRYLSTGKAKVCCVKMTAMDLELPISAKLLH FT HPTTEIRSEFYLIMDIWDSKNIKRFIPKGVLYSYINNVITENVFIQQPFKLKTLRNEYV FT VALYALSNDFNNREDVIKLVNNQKNALITVRINNTFKDEPKVGFKDIYDWTFLPTDFET FT NESIITSYDGCLGMFGLSISLASKPTGNNHLFILSGTNKYFKLDQFANHMSISRRSHQI FT RFSESATSYSGYIFRDLSNNNFNLIGTNVENSVSGHVYNALIYYRYNYSFDLKRWIYLH FT STNKASIEGGRYYEHAPIELIYACRSAREFARLQDDLTVLRYSNEIENYINKVYSITYA FT DDPNYFIGIKFKNIPYEYDVKVPHLTFGVLNISNSMVPDVVAILKKFKSELFRMDVTTS FT YTYMLSDEIYVANVSGVLSTYFKLYNAFYKEQITFGQSRMFIPHITLSFSDKKVVRIDS FT TRLNIDFIYLRKIKGDTVFDMAE" XX SQ Sequence 2508 BP; 954 A; 341 C; 440 G; 773 T; 0 other; atgaaagtat tagctttaag acatagtgtg gctcaggtat atgcggacac tcaaatatat 60 actcatgatg aaactaaaga tgactacgaa aatgcatttt taatttctaa tctcactaca 120 cataatatat tatatctaaa ttatagcgtt aagacactgc aaatattgaa taaatctggt 180 atagctgcgg tagaaataca gaaaatggat gaattgttta cgttaattag atgtaatttc 240 acatatgact atattgaaga cattgtttat ctccatgact attcatatta tactaacaat 300 gagataagga ctgatcaaca ttgggtaact aagacaaata tagaagatta tttattgcca 360 ggatggaagc tgacgtatgt tggatataac ggaagtgata caagaggaca ttataacttt 420 tcttttaaat gtcaaaatgc ggctacagac gatgatgcaa taatagaata tatctactca 480 aatgaattag acttccagaa tttcatactt aaaaagatca aggaaaggat gacaacctca 540 ctgccaatag cgagattatc aaatcgtgtg ttcagagaca aattatttaa aacattagta 600 tcagatcata gtaaagtagt taacgttgga ccaagaaatg aatctatgtt tacttttcta 660 gatcatccat caataaagca gttttcaaat ggaccctact tagttaaaga tacaataaag 720 cttaaacaag agagatggct cggtaagaga ctatcgcaat ttgatatcgg tcagtataaa 780 aatatgctaa atgtattaac aacattatat caatactatg atatgtatca tgaaaagcca 840 ataatctaca tgataggatc agcaccctca tattggatat acgatgtaaa acaatactct 900 aatttgaaat ttgagacatg ggacccattg gatacgccat actctgattt acatcataaa 960 gaactgtttt atataagtga tgtaaccaaa cttaaagata attcgatatt atatgtagat 1020 atacgaacgg atagagaaaa tatggattgg aaaacgtgga ggaagattgt agaagaacag 1080 accattaaca atttgaatat cgcgtacaga tacttatcta cagggaaagc taaagtatgt 1140 tgtgttaaaa tgactgctat ggatttagaa ctaccaatat ctgcaaaact actacatcac 1200 ccaactacag aaattaggtc agaattttat ttaataatgg atatatggga ttctaaaaat 1260 attaaacggt ttataccaaa aggagtgtta tattcatata taaataatgt aattactgag 1320 aacgtgttca tacaacaacc gtttaaattg aaaacattaa ggaatgaata tgtggttgca 1380 ttgtacgcgc tatctaatga ttttaataat agagaagatg taataaaatt agttaacaat 1440 cagaagaatg cgttaataac tgtaaggatc aataatacgt ttaaagacga accaaaagtg 1500 gggtttaagg atatttatga ttggactttt ttgccaactg atttcgaaac gaatgagtca 1560 ataatcacgt catatgatgg ttgtttaggt atgtttggtt tatcgatatc attagcttca 1620 aaaccgactg gaaataatca tctgttcatt ttgagcggta ctaacaaata ttttaaattg 1680 gatcaatttg caaatcatat gagcatatca agacggtcac atcaaatacg attttcggaa 1740 tcagcgactt cgtattcagg ttacattttt agagatttat caaataataa ttttaattta 1800 ataggtacga atgttgaaaa ttcggtgtct ggacatgtgt ataacgcatt aatttattat 1860 agatataact attcatttga tcttaaacga tggatatact tacattcaac aaacaaggct 1920 agtattgaag gcggcagata ttatgaacac gctccgatag agttgattta cgcatgcaga 1980 tcagcaaggg agttcgcaag attgcaagac gatttaacgg tactaagata ttcaaatgaa 2040 atagaaaact acattaataa agtgtatagt ataacatatg ccgacgatcc gaactatttt 2100 attggaatta agttcaaaaa cataccatat gaatatgacg ttaaagtacc acatcttaca 2160 tttggtgtat taaatatttc aaattccatg gtgccggatg tagtagcaat tttaaagaag 2220 tttaaaagtg aattgtttag aatggatgta accacgagtt atacatatat gttatcagac 2280 gaaatctatg tagcaaacgt aagtggcgta ttatcaacat attttaagct ttacaatgca 2340 ttctataaag agcaaattac gttcggacaa tcaagaatgt ttattccaca cataacatta 2400 agtttcagtg ataagaaagt agtgaggata gatagtacgc gattgaacat agactttata 2460 tatttgagga aaataaaagg cgatacagtg ttcgatatgg ctgagtga 2508 // |
|