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EBI DbfetchID EF560617; SV 1; linear; genomic RNA; STD; VRL; 2591 BP. XX AC EF560617; XX DT 26-MAR-2008 (Rel. 95, Created) DT 26-MAR-2008 (Rel. 95, Last updated, Version 1) XX DE Rotavirus A strain WC3 VP3 gene, complete cds. XX KW . XX OS Rotavirus A OC Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Rotavirus. XX RN [1] RP 1-2591 RX DOI; 10.1128/JVI.02257-07 RX PUBMED; 18216098. RA Matthijnssens J., Ciarlet M., Heiman E., Arijs I., Delbeke T., RA McDonald S.M., Palombo E.A., Iturriza-Gomara M., Maes P., Patton J.T., RA Rahman M., Van Ranst M.; RT "Full genome-based classification of rotaviruses reveals a common origin RT between human Wa-Like and porcine rotavirus strains and human DS-1-like and RT bovine rotavirus strains"; RL J. Virol. 82(7):3204-3219(2008). XX RN [2] RP 1-2591 RA Matthijnssens J., Ciarlet M.; RT ; RL Submitted (17-APR-2007) to the EMBL/GenBank/DDBJ databases. RL Microbiology and Immunology, Laboratory of Clinical and Epidemiological RL Virology, Rega Institute for Medical Research, University of Leuven, RL Minderbroedersstraat 10, Leuven 3000, Belgium XX FH Key Location/Qualifiers FH FT source 1..2591 FT /organism="Rotavirus A" FT /host="bovine" FT /strain="WC3" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="1981" FT /note="genotype: G6P7[5]" FT /db_xref="taxon:28875" FT CDS 50..2557 FT /codon_start=1 FT /product="VP3" FT /db_xref="GOA:B2BMF9" FT /db_xref="InterPro:IPR009697" FT /db_xref="InterPro:IPR011181" FT /db_xref="UniProtKB/Swiss-Prot:B2BMF9" FT /protein_id="ABU48678.1" FT /translation="MKVLALRHSVAQVYADTQIYTHDETKDDYENAFLISNLTTHNILY FT LNYSVKTLQILNKSGIAAVEIQEMDELFTLIRCNFTYDYIDDIVYLHDYSYYTNNEIRT FT DQHWVTKTNIEDYLLPGWKLTYVGYNGNDTRGHYNFSFKCQNAATDDDAIIEYIYSNEL FT DFQNFILKKIKERMTTSLPIARLSNRVFRDKLFKTLVSDHSRVVNVGPRNESMFTFLDH FT PSIKQFSNGPYLVKDTIKLKQERWLGKRLSQFDIGQYKNMLNVLTTLYQYYDMYHEKPI FT IYMVGSAPSYWIHDVRQYSNLKFETWDPLDTPYSDLHHKELFYISDVTKLKDNSILYVD FT IRTDRENTDWKAWRKIVEEQTINNLNIAYKYLSTGKAKVCCVKMTAMDLELPISAKLLH FT HPTTEIRSEFYLIMDIWDSKNIKRFIPKGVLYSYINNVITENVFIQQPFKLKTLRNEYV FT VALYALSNDFNNREDVIKLVNNQKNALITVRINNTFKDEPKVGFKDIYDWTFLPTDFET FT NESIITSYDGCLGMFGLSISLASKPTGNNHLFILSGTNKYFKLDQFANHMSISRRSHQI FT RFSESATSYSGYIFRDLSNNNFNLIGTNVENSVSGHVYNALIYYRYNYSFDLKRWIYLH FT ATNKAGIEGGRYYEHAPIELIYACRSAKEFAKLQDDLTVLRYSNEIEDYINKVYSITYA FT DDPNYFIGIKFKNIPYEYDVKVPHLTFGVLNISDSMVPDVVAILKKFKSELFRMDVTTS FT YTYMLSDEIYVANVSGVLSTYFKLYNAFYKEQITFGQSRMFIPHITLSFSNKKVVRIDS FT TRLNIDFIYLRKIKGDTVFDMTE" XX SQ Sequence 2591 BP; 965 A; 364 C; 471 G; 791 T; 0 other; ggctattaaa gcagtaccag tagtgtgttt tacctctgat ggtgtaaaca tgaaagtatt 60 agctttaaga catagtgtgg ctcaggtata tgcggacact caaatatata ctcatgatga 120 aaccaaagat gactacgaga acgcattttt aatttctaat ctcactacac ataatatatt 180 gtatctaaat tatagcgtta agacattgca aatattgaat aaatctggta tagctgcggt 240 agaaatacag gagatggatg aattgtttac gctaattaga tgcaacttca catatgatta 300 tattgacgac attgtttacc ttcatgatta ttcatactat actaataatg agataaggac 360 tgatcaacat tgggtaacta aaacaaatat agaagactat ttattaccag gatggaaact 420 gacgtatgtt ggatataacg gaaatgacac aagagggcac tataactttt cttttaaatg 480 tcaaaatgca gctacggacg atgatgcaat aatagaatat atttattcaa atgaattgga 540 cttccaaaat ttcatactta aaaaaatcaa agaaaggatg acgacatcac tgccaatagc 600 gagattatcg aatcgtgtgt tcagagacaa attatttaag acgctagtat cagatcacag 660 tagagtagtt aacgttggac caagaaatga atctatgttt acttttctag atcacccgtc 720 aataaagcaa ttttcaaatg gaccctattt agttaaagat acgataaagc ttaaacaaga 780 gagatggctc ggtaagagac tatcgcaatt tgacattggt cagtataaga acatgctaaa 840 tgtattaaca actttatacc aatactatga catgtatcat gagaagccaa taatttacat 900 ggtaggatca gcaccttcat attggataca cgatgtcagg caatactcta atttaaagtt 960 tgagacatgg gacccattgg atacaccata ctctgatttg catcataaag aattgtttta 1020 tataagtgac gtaaccaaac ttaaagataa ttcgatatta tatgtagata tacgaacgga 1080 tagagaaaat acagattgga aagcgtggag gaagattgtg gaagagcaaa ctataaataa 1140 tttgaatatc gcatacaaat acttatccac aggaaaagct aaagtatgtt gtgttaaaat 1200 gactgccatg gatttagaac taccaatatc tgcaaaacta ctacatcatc caactacaga 1260 aattaggtca gaattttatt taataatgga tatatgggat tctaaaaata ttaaacgatt 1320 tataccgaag ggcgtgttat attcatatat taacaatgta attactgaga acgtgttcat 1380 acaacaaccg tttaaattga aaacgttaag gaatgaatat gtggttgcat tatacgcact 1440 gtctaacgac tttaataata gagaggatgt gataaaattg gttaacaatc agaagaatgc 1500 gttaataact gtgaggataa ataatacatt taaagatgaa ccaaaagtgg ggtttaaaga 1560 tatttatgac tggacttttt tgccaactga tttcgaaacg aatgagtcaa taatcacgtc 1620 atatgatggt tgtttaggta tgtttggctt atcaatatca ttagcttcaa aaccaactgg 1680 aaataatcat ctgttcattt tgagcggtac taataaatat tttaaattgg atcaatttgc 1740 gaatcatatg agtatatcaa gacggtcaca tcaaatacga ttttcggaat cagcgacttc 1800 atattcaggt tacattttta gagatttatc aaataataat tttaatttaa taggtacgaa 1860 tgttgagaat tcggtatctg gacatgtgta caatgcattg atttattata gatataatta 1920 ttcattcgat cttaagcgat ggatatactt acatgcaaca aacaaggctg gcattgaagg 1980 cggcagatac tatgaacatg ctccgataga gttgatttac gcatgtagat cggcaaagga 2040 attcgcaaaa ttgcaagatg atttaacagt actaagatat tcgaatgaaa tagaagatta 2100 cattaataaa gtgtacagta taacatacgc cgacgatccg aactacttta ttggaattaa 2160 gttcaaaaat ataccatatg aatatgatgt taaagtaccg catcttacat ttggtgtatt 2220 aaatatttca gattccatgg tgccggatgt agtagcaatt ttaaagaagt ttaaaagtga 2280 attgtttaga atggatgtaa ccacaagtta tacgtatatg ttgtcagatg aaatctatgt 2340 ggcaaacgta agtggtgtgt tatcaacata ttttaaactt tacaatgcat tctataaaga 2400 gcaaattacg tttggacaat caagaatgtt tattccgcac ataacattaa gtttcagtaa 2460 caagaaagta gtgagaatag atagtacgcg attgaacata gactttatat atttgaggaa 2520 aataaaaggc gatacagtgt tcgatatgac tgagtgagca aaaatcttaa cacactagtc 2580 atgatgtgac c 2591 // |
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