EBI Dbfetch

ID   EF376542; SV 1; linear; genomic DNA; STD; VRL; 297 BP.
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AC   EF376542;
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DT   20-FEB-2007 (Rel. 90, Created)
DT   30-JUN-2007 (Rel. 92, Last updated, Version 2)
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DE   HIV-1 clone 41078 from Italy protease (pol) gene, partial cds.
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KW   .
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OS   Human immunodeficiency virus 1
OC   Viruses; Retro-transcribing viruses; Retroviridae; Orthoretrovirinae;
OC   Lentivirus; Primate lentivirus group.
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RN   [1]
RP   1-297
RX   DOI; 10.1086/518287
RX   PUBMED; 17516412.
RA   Vicenti I., Razzolini F., Saladini F., Romano L., Zazzi M.;
RT   "Use of peripheral blood DNA for genotype antiretroviral resistance testing
RT   in drug-naive HIV-infected subjects";
RL   Clin. Infect. Dis. 44(12):1657-1661(2007).
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RN   [2]
RP   1-297
RA   Vicenti I., Razzolini F., Saladini F., Romano L., Zazzi M.;
RT   ;
RL   Submitted (19-JAN-2007) to the EMBL/GenBank/DDBJ databases.
RL   Department of Molecular Biology, University of Siena, Policlinico Le
RL   Scotte, Viale Bracci, Siena 53100, Italy
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FH   Key             Location/Qualifiers
FH
FT   source          1..297
FT                   /organism="Human immunodeficiency virus 1"
FT                   /isolate="patient 3335"
FT                   /mol_type="genomic DNA"
FT                   /country="Italy"
FT                   /clone="41078"
FT                   /proviral
FT                   /db_xref="taxon:11676"
FT   gene            <1..>297
FT                   /gene="pol"
FT   CDS             <1..>297
FT                   /codon_start=1
FT                   /gene="pol"
FT                   /product="protease"
FT                   /db_xref="GOA:A3FH86"
FT                   /db_xref="InterPro:IPR009007"
FT                   /db_xref="PDB:2PC0"
FT                   /db_xref="UniProtKB/TrEMBL:A3FH86"
FT                   /protein_id="ABN55216.1"
FT                   /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPK
FT                   MIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF"
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SQ   Sequence 297 BP; 110 A; 47 C; 65 G; 75 T; 0 other;
     cctcaaatca ctctttggca acgacccctc gtcacaataa agataggggg acaactaaag        60
     gaagccctat tagatacagg agcagatgat acagtattag aagaaatgaa tttgccagga       120
     agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat       180
     cagatactca tagaaatttg tggacataaa gctataggta cagtattagt aggacctaca       240
     cctgtcaaca taattggaag aaatctgttg actcagattg gttgcacttt aaatttt          297
//