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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   EF376444; SV 1; linear; genomic RNA; STD; VRL; 297 BP.
XX
AC   EF376444;
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DT   20-FEB-2007 (Rel. 90, Created)
DT   30-JUN-2007 (Rel. 92, Last updated, Version 2)
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DE   HIV-1 clone 59354R from Italy protease (pol) gene, partial cds.
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KW   .
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OS   Human immunodeficiency virus 1
OC   Viruses; Retro-transcribing viruses; Retroviridae; Orthoretrovirinae;
OC   Lentivirus; Primate lentivirus group.
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RN   [1]
RP   1-297
RX   DOI; 10.1086/518287
RX   PUBMED; 17516412.
RA   Vicenti I., Razzolini F., Saladini F., Romano L., Zazzi M.;
RT   "Use of peripheral blood DNA for genotype antiretroviral resistance testing
RT   in drug-naive HIV-infected subjects";
RL   Clin. Infect. Dis. 44(12):1657-1661(2007).
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RN   [2]
RP   1-297
RA   Vicenti I., Razzolini F., Saladini F., Romano L., Zazzi M.;
RT   ;
RL   Submitted (19-JAN-2007) to the EMBL/GenBank/DDBJ databases.
RL   Department of Molecular Biology, University of Siena, Policlinico Le
RL   Scotte, Viale Bracci, Siena 53100, Italy
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FH   Key             Location/Qualifiers
FH
FT   source          1..297
FT                   /organism="Human immunodeficiency virus 1"
FT                   /isolate="patient 2848"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy"
FT                   /clone="59354R"
FT                   /db_xref="taxon:11676"
FT   gene            <1..>297
FT                   /gene="pol"
FT   CDS             <1..>297
FT                   /codon_start=1
FT                   /gene="pol"
FT                   /product="protease"
FT                   /db_xref="GOA:A3FGY8"
FT                   /db_xref="InterPro:IPR001969"
FT                   /db_xref="InterPro:IPR001995"
FT                   /db_xref="InterPro:IPR009007"
FT                   /db_xref="InterPro:IPR018061"
FT                   /db_xref="UniProtKB/TrEMBL:A3FGY8"
FT                   /protein_id="ABN55118.1"
FT                   /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPK
FT                   MIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF"
XX
SQ   Sequence 297 BP; 107 A; 47 C; 67 G; 75 T; 1 other;
     cctcagatca ctctttggca acgacccctc gtcacaataa agataggggg gcaactaaag        60
     gaagctctat tagatacagg agcagatgat acagtattag aagaaatgaa tttgccagga       120
     aggtggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat       180
     caaatactca tagaaatctg tggacataaa gctataggta cagtrttagt aggacctaca       240
     cctgtcaaca taattggaag aaatctgttg actcagattg gttgcacttt aaatttt          297
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