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EBI DbfetchID EF175470; SV 1; linear; genomic DNA; STD; PLN; 3846 BP. XX AC EF175470; XX DT 12-DEC-2007 (Rel. 94, Created) DT 12-DEC-2007 (Rel. 94, Last updated, Version 1) XX DE Hordeum vulgare subsp. vulgare cultivar Steptoe beta-amylase (Bmy1) gene, DE complete cds. XX KW . XX OS Hordeum vulgare subsp. vulgare (domesticated barley) OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; OC Pooideae; Triticeae; Hordeum. XX RN [1] RP 1-3846 RA Filichkin T.P., Helgesson J., Hayes P.M.; RT "DNA variation in the exons and introns of Bmy1 does not account for RT phenotypic variation in diastatic power, beta-amylase 1 enzyme RT thermostability, or enzyme activity in experimental barley germplasm"; RL Unpublished. XX RN [2] RP 1-3846 RA Filichkin T.P., Helgesson J., Hayes P.M.; RT ; RL Submitted (08-DEC-2006) to the EMBL/GenBank/DDBJ databases. RL Crop and Soil Science, Oregon State University, Crop Science Bldg., Rm.107, RL Corvallis, OR 97331, USA XX FH Key Location/Qualifiers FH FT source 1..3846 FT /organism="Hordeum vulgare subsp. vulgare" FT /sub_species="vulgare" FT /cultivar="Steptoe" FT /mol_type="genomic DNA" FT /db_xref="taxon:112509" FT gene <24..>3795 FT /gene="Bmy1" FT mRNA join(<24..74,290..688,1057..1221,2304..2567,2777..2986, FT 3164..3403,3517..>3795) FT /gene="Bmy1" FT /product="beta-amylase" FT CDS join(24..74,290..688,1057..1221,2304..2567,2777..2986, FT 3164..3403,3517..3795) FT /codon_start=1 FT /gene="Bmy1" FT /product="beta-amylase" FT /db_xref="GOA:Q84T19" FT /db_xref="HSSP:1B1Y" FT /db_xref="InterPro:IPR013781" FT /db_xref="UniProtKB/TrEMBL:Q84T19" FT /protein_id="ABO93644.1" FT /translation="MEVNVKGNYVQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGV FT DGVMVDVWWGLVEGKGPKAYDWSAYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIP FT IPQWVRDVGTRDPDIFYTDGHGTRNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENM FT KDFLDAGVIVDIEVGLGPAGEMRYPSYPQSHGWSFPGIGEFICYDKYLQADFKAAAAAV FT GHPEWEFPNDVGQYNDTPERTQFFRDNGTYLSEKGRFFLAWYSNNLIKHGDRILDEANK FT VFLGYKVQLAIKISGIHWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFT FT CAEMRDSEQSSQAMSAPEELVQQVLSAGWREGLNVACENALPRYDPTAYNTILRNARPH FT GINQSGPPEHKLFGFTYLRLSNQLVEGQNYVNFKTFVDRMHANLPRDPYVDPMAPLPRS FT GPEISIEMILQAAQPKLQPFPFQEHTDLPVGPTGGMGGQAEGPTCGMGGQVKGPTGGMG FT GQAEDPTSGMGGELPATM" XX SQ Sequence 3846 BP; 1181 A; 800 C; 857 G; 1008 T; 0 other; atcatccata gccagcatcc acaatggagg tgaacgtgaa aggcaactat gtccaagtct 60 acgtcatgct ccctgtaagc tccatccatt cagaccaatc gctgagaacc acacactaaa 120 actatttcaa ggatctagtg cacacatata cattattgtt gtacatataa cattgatact 180 tcttgtaaaa ctctaattca aagggtgaag aacaagatct gaggcctcaa atgagtattt 240 tatttgtact aaccttgact acacttccat tgttgaaata aataaatagc tggacgccgt 300 gagcgtgaac aacaggttcg agaagggcga cgagctgagg gcgcaattga ggaagctggt 360 agaggccggt gtggatggtg tcatggtaga cgtctggtgg ggcttggtgg agggcaaggg 420 ccccaaggcg tatgactggt ccgcctacaa gcagttgttt gagctggtgc agaaggctgg 480 gctgaagcta caggccatca tgtcgttcca ccagtgtggt ggcaacgtcg gcgacgccgt 540 caacatccca atcccacagt gggtgcggga cgtcggcacg cgtgatcccg acattttcta 600 caccgacggt cacgggacta ggaacattga gtacctcact cttggagttg ataaccagcc 660 tctcttccat ggaagatctg ccgtccaggt taatttaaac caccactcta gttctctgat 720 gcatatttat atagaagttc aagatgacac caaatacaag caaaaggtta aaggtgccaa 780 aaacagataa gcaaagaaac aaaacctagc taatgaaaca gtctagagcc tatcaaaaaa 840 aaaaaacatc gagaaggtgc ctagagcgga tgggtttcga caacccttta gctttcatgc 900 atctttttgg gaaagggtga aaaacaccgt cctttaagtc gattgatgca ggcagccttc 960 tattgtttgt aagctatcag gaaatacaaa attaatagct agttgtcatt ttaatagttg 1020 tagcaagctt tgattcttct tttgtggctg tgacagatgt atgccgatta catgacaagc 1080 ttcagggaga acatgaaaga cttcttggat gctggtgtta tcgtcgacat tgaagtggga 1140 cttggcccag ctggagagat gaggtaccca tcatatcctc agagccacgg atggtcgttc 1200 ccaggcatcg gagaattcat cgtgagtgtt tgtttccaaa ctaataatct ttcctcttct 1260 gttccgatca aatactccct ccgtcctaaa attcttgtct tagctttgtc tagaaattga 1320 tgtatctaaa tactaaaact taactagata cattcatatc taaacaaatc taagacaaga 1380 attttggaac ggaggtagta taattttcga tgtaactcaa catgtgaata tgtgatggcc 1440 aagtcacgat ctacatttag aaaagctttt caagaaacaa acacccaaat gaaaagtgat 1500 tcttaaagga aaaaagtgca tggataaaat ggcagtttca gattaggaca aggcgtggta 1560 aacctgactt gatcatttct gttacccaat atacccccgc ccaatttttg tattttctta 1620 ttcctcccaa ataagacatc atataaacag gaaaatggta tttaaaatat gagaaatata 1680 taggattcat ctgtgcaact taaatactta aaatgatttt ttattggaaa agactaattt 1740 tatatattta tggtacacca aaaatccaaa atgttttcgg cacattgtag tctctatgat 1800 tcattgaccc cacacgtgcg gttccctcac gtctaaacgt ggactgtaaa tttaaatttt 1860 taaattgagt gtcttgggtc ttgaatttaa gaccttttga ctcggatacc atgtaaaact 1920 gcacgcacca gacagttcac ccataagctc ttgcttatgg agaaaggtgg gctatgcatt 1980 tatacttcaa caataagaat agtgaggtag cacaaacctt gatgcaaggc tagatgacac 2040 agatgggtgt gtgtgttggg gggggggggg gatgcacctg aatccgattt caggaagttt 2100 ggcactactt ttgccttccg ggagaccatg tatgctattg tttgagcaaa gtatcatagc 2160 aaatacaaga ccatcttaaa atacatgaca tgaaatagtt aaaacaaatg cacgataata 2220 tataccatta ccattacaga aaaaatggct ctactcgtac ttaactgttt gaactaatag 2280 tacaaataaa aataaaattg cagtgctatg ataaatacct acaagcagac ttcaaagcag 2340 cagcagcggc ggttggccat cctgagtggg aatttcctaa cgatgtcgga cagtacaatg 2400 acactcccga gagaactcaa ttcttcagag acaacgggac atacctaagt gagaagggga 2460 ggtttttcct tgcatggtac tccaacaatc tgatcaagca cggtgacagg atcttggatg 2520 aagcaaacaa ggtcttcttg ggatacaagg tgcaactggc aatcaaggta taaacacttc 2580 catgcatcct aaagatctcg gtttattact acagtagtag ataggatttg agaaaccatg 2640 attcagttga gaagttgtgt atgataaaca acaacaaaaa tacacaaact atccaggcta 2700 agggaactcg cattcgcatt gcttaatagc tagaatgtaa atgagacatg gccggccaaa 2760 taatgtttgg ttgcagatct ctggcattca ctggtggtac aaggttccaa gccatgcagc 2820 cgagctcaca gctgggtact acaacttaca tgatagagac ggctacagaa ccatagcacg 2880 catgctcaaa aggcaccgtg ctagcattaa cttcacttgc gcggagatga gggattcgga 2940 gcaaagctcg caggcgatga gcgcaccaga agaactagtc caacaggtag gtaataactt 3000 atgcgttcag atatattacg cttatatatc tacgtatata ctatgatgga aacacctttt 3060 ttttttagaa aaggaggctt agctccggcc tctgcatcga aagatgcata cggccatgat 3120 gatggaaaca cctaaatcac ttgtcgtcaa aataatttct caggtgttga gtgctggatg 3180 gagagagggc ctaaatgtgg catgcgaaaa cgcgcttcca cgatatgatc caactgctta 3240 caacaccata ctcaggaatg cgaggcctca tggaatcaac cagagcggcc ctcctgagca 3300 caagctgttt ggattcacct accttcggct gtcgaatcag ctggtggagg gacaaaacta 3360 tgtcaatttc aagacctttg tcgacagaat gcatgccaac ctggttagtg ccacaaccac 3420 ttactaacgc atgtcaaaaa ttaaacatat acaagaacca tttgttgatt tgcaggtgcc 3480 tattatatac taataattta attttattgt tttcagcctc gtgacccata tgttgatcca 3540 atggcgcctt tgccaagatc agggccagaa atatcgattg agatgatcct acaagcagca 3600 cagccaaaac tgcagccatt ccccttccag gagcacaccg acctgccagt aggccctact 3660 ggtggcatgg gtgggcaggc tgaaggcccc acctgtggca tgggtgggca agttaaaggc 3720 cctactggtg gcatgggtgg gcaggctgaa gaccctacta gtggcatggg tggggagctc 3780 cctgccacca tgtaatggaa cctttatgat ttactaccct ttatgttgtg tgtgagtgtg 3840 acagag 3846 // |
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