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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   EF158512; SV 1; linear; genomic DNA; STD; VRL; 297 BP.
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AC   EF158512;
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DT   03-JAN-2007 (Rel. 90, Created)
DT   27-FEB-2007 (Rel. 90, Last updated, Version 2)
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DE   HIV-1 isolate 04004491 from Germany protease (pol) gene, partial cds.
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KW   .
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OS   Human immunodeficiency virus 1
OC   Viruses; Retro-transcribing viruses; Retroviridae; Orthoretrovirinae;
OC   Lentivirus; Primate lentivirus group.
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RN   [1]
RP   1-297
RX   DOI; 10.1128/JVI.01547-06
RX   PUBMED; 17202219.
RA   Mueller S.M., Schaetz B., Eismann K., Bergmann S., Bauerle M.,
RA   Schmitt-Haendle M., Walter H., Schmidt B., Korn K., Sticht H.,
RA   Spriewald B., Harrer E.G., Harrer T.;
RT   "Dual selection pressure by drugs and HLA class I-restricted immune
RT   responses on human immunodeficiency virus type 1 protease";
RL   J. Virol. 81(6):2887-2898(2007).
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RN   [2]
RP   1-297
RA   Mueller S.M., Schaetz B., Eismann K., Bergmann S., Bauerle M.,
RA   Schmitt-Haendle M., Walter H., Schmidt B., Korn K., Sticht H.,
RA   Spriewald B., Harrer E.G., Harrer T.;
RT   ;
RL   Submitted (04-DEC-2006) to the EMBL/GenBank/DDBJ databases.
RL   Clinical Immunology, University Hospital Erlangen, Glueckstr. 4a, Erlangen
RL   91054, Germany
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FH   Key             Location/Qualifiers
FH
FT   source          1..297
FT                   /organism="Human immunodeficiency virus 1"
FT                   /isolate="04004491"
FT                   /mol_type="genomic DNA"
FT                   /country="Germany"
FT                   /proviral
FT                   /note="host HLA class I: A3, A3, B7, B35, Cw4, Cw7 subtype:
FT                   01_AE"
FT                   /db_xref="taxon:11676"
FT   gene            <1..>297
FT                   /gene="pol"
FT   CDS             <1..>297
FT                   /codon_start=1
FT                   /gene="pol"
FT                   /product="protease"
FT                   /db_xref="GOA:A1Z1H7"
FT                   /db_xref="InterPro:IPR001969"
FT                   /db_xref="InterPro:IPR001995"
FT                   /db_xref="InterPro:IPR009007"
FT                   /db_xref="InterPro:IPR018061"
FT                   /db_xref="UniProtKB/TrEMBL:A1Z1H7"
FT                   /protein_id="ABM21802.1"
FT                   /translation="PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEDINLPGKWKPK
FT                   MIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNF"
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SQ   Sequence 297 BP; 112 A; 43 C; 63 G; 79 T; 0 other;
     cctcaaatca ctctttggca acgacccctt gtcacagtaa aaataggagg acagcttaaa        60
     gaagctctat tagatacagg agcagatgat acagtattag aagatataaa tttgccagga       120
     aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag gcaatacgat       180
     cagatactta tagaaatttg tggaaaaaag gctataggta cagtattagt aggacctaca       240
     cctgtcaaca taattggacg aaatatgttg actcagattg gttgtacttt aaatttt          297
//
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