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EBI DbfetchID EF107518; SV 1; linear; genomic DNA; STD; PRO; 6045 BP. XX AC EF107518; XX DT 07-DEC-2006 (Rel. 90, Created) DT 27-FEB-2007 (Rel. 90, Last updated, Version 2) XX DE Campylobacter jejuni strain GB23 lipooligosaccharide biosynthesis gene DE locus, complete sequence. XX KW . XX OS Campylobacter jejuni OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Campylobacteraceae; Campylobacter. XX RN [1] RP 1-6045 RX DOI; 10.1128/IAI.00872-06 RX PUBMED; 17261613. RA Godschalk P.C., Kuijf M.L., Li J., StMichael F., Ang C.W., Jacobs B.C., RA Karwaski M.F., Brochu D., Moterassed A., Endtz H.P., van Belkum A., RA Gilbert M.; RT "Structural characterization of Campylobacter jejuni lipooligosaccharide RT outer cores associated with Guillain-Barre and Miller Fisher syndromes"; RL Infect. Immun. 75(3):1245-1254(2007). XX RN [2] RP 1-6045 RA Gilbert M., Godschalk P.C.R., Karwaski M.-F., Leclerc S., Endtz H.P.; RT "Sequencing of the lipooligosaccharide locus of Campylobacter jejuni GB23"; RL Unpublished. XX RN [3] RP 1-6045 RA Gilbert M., Godschalk P.C.R., Karwaski M.-F., Leclerc S., Endtz H.P.; RT ; RL Submitted (07-NOV-2006) to the EMBL/GenBank/DDBJ databases. RL Institute for Biological Sciences, National Research Council Canada, 100 RL Sussex Drive, Ottawa, Ontario K1A 0R6, Canada XX FH Key Location/Qualifiers FH FT source 1..6045 FT /organism="Campylobacter jejuni" FT /strain="GB23" FT /serotype="HS:4/HS:13/HS:43" FT /mol_type="genomic DNA" FT /db_xref="taxon:197" FT misc_feature 1..6045 FT /note="lipooligosaccharide biosynthesis gene locus" FT CDS 57..1313 FT /codon_start=1 FT /transl_table=11 FT /product="glycosyltransferase" FT /note="Orf1" FT /db_xref="GOA:Q9F0N2" FT /db_xref="InterPro:IPR001173" FT /db_xref="UniProtKB/TrEMBL:Q9F0N2" FT /protein_id="ABL07601.1" FT /translation="MNLKQISVIIIVKNAEQTLLECLNSLKDFDEIILLNNESIDNTLN FT IANKFKKDFANLYIYHNAFIGFGALKNLALSYAKNDWILSIDADEVLENECIKELKNLK FT LQEDNIIALSRKNLYKGEWIKACGWWPDYVLRIFNKNFTRFNDNLVHESLVLPSNAKKI FT YLKNGLKHYSYKDISHLIDKMQYYSSLWAKQNIHKKSGVLKANLRAFWTFFRNYFLKNG FT FLYGYKGFIISVCSALGTFFKYMKLYELQRQKPKTCALIIITYNQKERLKLVLDSVKNL FT AFLPNEVLIADDGSKEDTARLIEEYQKDFPCPLKHIWQEDEGFKLSKSRNKTIKNADSE FT YIIVIDGDMILEKDFIKEHLEFAQRKLFLQGSRVILNKKESEEILNKDDYRIIFNKKDF FT KSSKNSFLAKIFYSLSKKR" FT CDS 1609..2778 FT /codon_start=1 FT /transl_table=11 FT /product="glycosyltransferase" FT /note="Orf2" FT /db_xref="GOA:Q9K317" FT /db_xref="InterPro:IPR001173" FT /db_xref="UniProtKB/TrEMBL:Q9K317" FT /protein_id="ABL07602.1" FT /translation="MKKIGVVIPIYNVEKYLRECLDSVINQTYTNLEIILVNDGSTDEH FT SLNIAKEYTLKDKRITLFDKKNGGLSSARNIGIEYFSGEYKLKNKTQHIKENSLIEFQL FT DGNNPYNIYKAYKSSQAFNNEKDLTNFTYPSIDYIIFLDSDNYWKLNCIEECVIRMKNV FT DVLWFDHDCTYEDNIKNKHKKTRMEIFDFKKECIITPKEYANRALSVGSRDISFGWNGM FT IDFNFLKQIKLKFINFIINEDIHFGIILFASANKIYVLSQKLYLCRLRANSISNHDKKI FT TKANVSEYFKDIYETFGENAKEAKNYLKAASRVITALKLIEFFKDQKNENALAIKETFL FT PCYAKKALMIKKFKKDPLNLKEQLVLIKPFIQTKLPYDIWKFWQKIKNI" FT gene 2848..3891 FT /gene="cgtA" FT CDS 2848..3891 FT /codon_start=1 FT /transl_table=11 FT /gene="cgtA" FT /product="beta-1,4-N-acetylgalactosaminyltransferase" FT /note="CgtA" FT /db_xref="GOA:Q9F0N1" FT /db_xref="InterPro:IPR010446" FT /db_xref="UniProtKB/TrEMBL:Q9F0N1" FT /protein_id="ABL07603.1" FT /translation="MLFQSYFVKIICLFIPFRKIRHKIKKTFLLKNIQRDKIDSYLPKK FT TLVQINKYNNEDLIKLNKAIIREGHKGYFNYDEKSKDPKSPLNPWAFIRVKNEAITLKA FT SLESILPAIQRGVIGYNDCTDGSEEIILEFCKQYPSFIPIKYPYEIQIQNPKSEENKLY FT SYYNYVASFIPKDEWLIKIDVDHIYDAKKLYKSFYIPKNKYDVVSYSRVDIHYFNDNFF FT LCKDNNGNILKEPGDCLLINNYNLKWKEVLIDRINNNWKKATKQSFSSNIHSLEQLKYK FT HRILFHTELNNYHFPFLKKHRAQDIYKYNWISIEEFKKFYLQNINHKIEPSMISKETLK FT KIFLTLF" FT gene complement(3977..4780) FT /gene="cgtB" FT CDS complement(3977..4780) FT /codon_start=1 FT /transl_table=11 FT /gene="cgtB" FT /product="truncated beta-1,3-galactosyltransferase" FT /note="CgtB" FT /db_xref="GOA:A1E4B4" FT /db_xref="InterPro:IPR001173" FT /db_xref="UniProtKB/TrEMBL:A1E4B4" FT /protein_id="ABL07604.1" FT /translation="MFKISIILPTYNVEQYIARAIESCINQTFKDIEIIVVDDCGNDNS FT INIAKEYSKKDKRIKIIHNEKNLGLLRARYEGVKVANSPYIMFLDPDDYLELNACEECI FT KILDEQDEVDLVFFNAIVESNVISYKKFDFNSGFYSKKEFVKKIIAKKNLYWTMWGKLI FT RKKLYLEAFASLKLEKDVKINMAEDVLLYYPMLSQAQKIAYMNCNLYHYVPNNNSICNT FT KNEVLVKNNIQELQLVLNYLRQNYILNKYCSVLYVLIKYLLYSNI" FT gene 4869..5744 FT /gene="cstII" FT CDS 4869..5744 FT /codon_start=1 FT /transl_table=11 FT /gene="cstII" FT /product="alpha-2,3-sialyltransferase" FT /note="Cst-II" FT /db_xref="GOA:Q9F0M9" FT /db_xref="InterPro:IPR009251" FT /db_xref="UniProtKB/TrEMBL:Q9F0M9" FT /protein_id="ABL07605.1" FT /translation="MKKVIIAGNGPSLKEIDYSRLPNDFDVFRCNQFYFEDKYYLGKKC FT KAVFYTPGFFFEQYYTLKHLIQNQEYETELIMCSNYNQAHLENENFVKTFYDYFPDAHL FT GYDFFKQLKEFNAYFKFHEIYFNQRITSGVYMCAVAIALGYKEIYLSGIDFYQNGSSYA FT FDTKQENLLKLAPDFKNDRSHYIGHSKNTDIKALEFLEKTYKIKLYCLCPNSLLANFIE FT LAPNLNSNFIIQEKNNYTKDILIPSSEAYGKFSKNINFKKIKIKENVYYKLIKDLLRLP FT SDIKHYFKGK" FT gene 5745..>6045 FT /gene="neuB1" FT CDS 5745..>6045 FT /codon_start=1 FT /transl_table=11 FT /gene="neuB1" FT /product="sialic acid synthase" FT /note="NeuB1" FT /db_xref="GOA:A0T3F3" FT /db_xref="InterPro:IPR013785" FT /db_xref="UniProtKB/TrEMBL:A0T3F3" FT /protein_id="ABL07606.1" FT /translation="MKEIKIQNIIISEEKAPLVVPEIGINHNGSLELAKIMVDAAFSAG FT AKIIKHQTHIVEDEMSKAAKKVIPGNAKISIYEIMQKCALNYKDELALKEYTEKL" XX SQ Sequence 6045 BP; 2451 A; 721 C; 794 G; 2079 T; 0 other; tttttttttc atagacgctt tgctagttat aatgaggaaa tttacaaggg tgcaaaatga 60 atctaaagca aataagcgtt attatcatcg taaaaaatgc tgagcaaact ttgcttgagt 120 gtttaaattc tttaaaagat tttgatgaaa ttattttact taacaatgaa agcattgata 180 ataccctaaa tatagctaat aaatttaaaa aagattttgc taatttatat atttatcaca 240 atgcttttat aggttttgga gctttaaaaa atcttgcttt aagttatgca aaaaatgatt 300 ggattttaag cattgatgct gatgaagtgc ttgaaaatga gtgtattaaa gagcttaaaa 360 atttaaaact tcaagaagat aatatcatcg cacttagccg taaaaatctc tataaaggcg 420 aatggataaa ggcatgtggt tggtggcctg attatgtttt gagaattttt aataaaaatt 480 tcactcgttt taatgataat ttagtacatg aaagccttgt tttgccaagt aatgctaaaa 540 aaatttatct taaaaatgga ttgaagcatt attcttataa ggatatctct cacttaattg 600 acaaaatgca gtactactca agtctttggg caaaacaaaa tatacacaaa aaaagtggtg 660 ttttaaaagc aaatttaaga gctttttgga ctttttttag aaattatttt ttaaaaaatg 720 gctttttata tggttataag ggttttataa ttagcgtttg ttctgcattg ggaacatttt 780 ttaaatatat gaaattatat gaacttcaaa gacaaaaacc aaaaacttgc gctttaataa 840 taataactta taatcaaaaa gaacgcctta aactagtgct tgatagtgtt aaaaatctag 900 cctttttacc caatgaagtt ttaatcgcag atgatggtag caaagaagat acagcaaggc 960 ttattgaaga atatcaaaaa gattttcctt gtcctttaaa acacatttgg caagaagatg 1020 aagggtttaa acttagtaaa agtcgcaaca aaactataaa aaacgctgat agtgaatata 1080 taatagttat tgatggtgat atgattttgg aaaaagattt cataaaagaa catttagaat 1140 ttgcacaaag aaagcttttt ttacaaggtt caagagtaat tttaaataaa aaagaaagcg 1200 aagaaatttt aaacaaagat gattatcgca taatttttaa taaaaaagat tttaaaagtt 1260 ctaaaaattc ttttttagct aaaatatttt acagtctttc aaaaaaaaga tgaaaaaatc 1320 ttttaaaaaa ccactcttat taaaggtatt aggggttgca atatgagttt ttttaaaact 1380 gattttgatg aacttgatgg ttttaatgaa aattttattg gttggggtag agaagatagt 1440 gaatttgttg ctagattttt atttaataaa ggcattttta gacgattaaa atttaaagct 1500 attgcttatc atatttatca caaagaaaat agcaaaaaaa tgcttgaaag caatcatcaa 1560 atttatttag ataccatcaa aaataaaaag atttcttgga gataaaacat gaagaaaata 1620 ggtgtagtta taccaatcta taatgtagaa aaatatttaa gagaatgttt agatagcgtt 1680 atcaatcaaa cttatactaa cttagaaatc atacttgtca atgatggtag cacagatgaa 1740 cactcactca atattgcaaa agaatatacc ttaaaagata aaagaataac tctttttgat 1800 aagaaaaatg ggggtttaag ttcagctaga aatataggta tagaatactt tagcggggaa 1860 tataaattaa aaaacaaaac tcaacatata aaagaaaatt ctttaataga atttcaattg 1920 gatggtaata atccttataa tatatataaa gcatataaaa gctctcaagc ttttaataat 1980 gaaaaagatt taaccaattt tacttaccct agtatagatt atattatatt cttagatagt 2040 gataattatt ggaaactaaa ctgcatagaa gaatgcgtta taagaatgaa aaatgtggat 2100 gtattgtggt ttgaccatga ttgcacctat gaagacaata taaaaaataa gcacaaaaaa 2160 acaaggatgg aaatttttga ttttaaaaaa gaatgtataa tcactccaaa agaatatgca 2220 aatcgagcat taagtgtagg atctagagat atttcttttg gatggaatgg aatgattgat 2280 tttaattttt taaagcaaat taaacttaaa tttataaatt ttattatcaa tgaagatata 2340 cactttggga taattttgtt tgctagtgct aataaaattt atgttttatc acaaaagttg 2400 tatttgtgtc gtttaagagc aaacagtata tcaaatcatg ataagaagat tacaaaagca 2460 aatgtgtcag agtattttaa agatatatat gaaactttcg gggaaaacgc taaggaagca 2520 aaaaattatt taaaagcagc aagcagggtt ataactgctt taaaattgat agaatttttt 2580 aaagatcaaa aaaacgaaaa tgcacttgct ataaaagaaa catttttacc ttgctatgcc 2640 aaaaaagctt taatgattaa aaaatttaaa aaagatcctt taaatttaaa ggaacaatta 2700 gttttaatta aaccttttat tcaaacaaaa cttccttatg atatttggaa attttggcaa 2760 aaaataaaaa atatttaata ataaaaatat aaaaaattaa ttaattttta ggtataatca 2820 ctataattat aggagaaaat attttatatg ctatttcaat catactttgt gaaaataatt 2880 tgcttattca tcccttttag aaaaattaga cataaaataa aaaaaacatt tttactaaaa 2940 aacatacaac gagataaaat cgattcttat ttaccaaaaa aaactcttgt gcaaattaat 3000 aaatacaaca atgaagattt aattaaactt aataaagcta ttatacggga ggggcataaa 3060 ggatatttta attatgatga aaaatctaaa gatccaaaat ctcctttgaa tccttgggct 3120 tttatacgag taaaaaatga agctattacc ttaaaagctt ctcttgaaag catattgcct 3180 gctatccaaa gaggtgttat aggatataat gattgtaccg atggaagtga agaaataatt 3240 ctagaatttt gcaaacaata tccttcattt ataccaataa aatatcctta tgaaattcaa 3300 attcaaaacc caaaatcaga agaaaataaa ctctatagct attataatta tgttgcaagt 3360 tttataccaa aagatgagtg gcttataaaa atagatgtgg atcatatcta tgatgctaaa 3420 aaactttata aaagcttcta tataccaaaa aacaaatatg atgtagttag ttattcaagg 3480 gttgatattc actattttaa tgataatttt tttctttgta aagataataa tggcaatata 3540 ttgaaagaac caggagattg cttgcttatc aataattata acttaaaatg gaaagaagta 3600 ttaattgaca gaatcaataa caattggaaa aaagcaacaa aacaaagttt ttcttcaaat 3660 atacactctt tagagcaatt aaagtataaa cacaggatat tatttcacac tgaattaaat 3720 aattatcatt ttcctttttt aaaaaaacat agagctcaag atatttataa atataattgg 3780 ataagtattg aagaatttaa aaaattctat ttacaaaata ttaatcataa aatagaacct 3840 tctatgattt caaaagaaac tctaaaaaaa atattcttaa cattgtttta aaaatttttt 3900 atatttaaat aaaattttta aagttaaaat atttatttta gctaacaatg taaccattaa 3960 ttttgttctt tttattttat atatttgaat atagcaaata tttaattagc acatagagaa 4020 cgctacaata cttgtttaaa atataatttt gccttaaata gtttaaaacc aactgcaact 4080 cttgaatatt atttttaaca agcacttcat tcttagtatt acaaattgaa ttattattag 4140 gcacgtaatg atataaatta cagttcatat atgctatttt ttgagcttga cttaacattg 4200 gataatataa caatacatct tcagccatat tgattttaac atctttctcg agttttaaac 4260 tcgcaaaagc ttctaaatac aatttctttc ttataagttt cccccacata gtccaatata 4320 aatttttctt tgcaataatt tttttcacaa actctttttt gctataaaaa ccagaattaa 4380 agtcaaactt tttatatgaa ataacattac tttcaacaat agcattgaaa aacactaaat 4440 caacttcatc ctgttcatct aaaattttta tacactcttc acaagcattt agttccaaat 4500 aatcatcagg atctaaaaac attatataag gagagtttgc tactttcaca ccttcatatc 4560 ttgctcttaa aagacctaag tttttttcat tgtggattat ttttattctt ttgtcttttt 4620 tagagtattc tttggctata tttatactat tatcatttcc acaatcatca actacaatta 4680 tttctatatc tttaaaagtc tgattgatac agctttctat tgcccttgct atatattgtt 4740 ccacattata agttggtaag atgattgaaa ttttaaacat atttattcct tattttatta 4800 taatttaatt ataacataaa atctattttg ataaaatcgt taaaaataaa tcttgatgga 4860 aaataatcat gaaaaaagtt attattgctg gaaatggacc aagtttaaaa gaaattgatt 4920 attcaaggct accaaatgat tttgatgtat ttagatgtaa tcaattttat tttgaagata 4980 aatactatct tggtaaaaaa tgcaaagcag tgttttacac ccctggtttc ttctttgagc 5040 aatactacac tttaaaacat ttaatccaaa atcaagaata tgagaccgaa ctaattatgt 5100 gttctaatta caaccaagct catctagaaa atgaaaattt tgtaaaaact ttttacgatt 5160 attttcctga tgctcatttg ggatatgatt tttttaaaca acttaaagaa tttaatgctt 5220 attttaaatt tcacgaaatt tatttcaatc aaagaattac ctcaggggtc tatatgtgtg 5280 cagtagccat agccctagga tacaaagaaa tttatctttc gggaattgat ttttatcaaa 5340 atgggtcatc ttatgctttt gataccaaac aagaaaatct tttaaaacta gcccctgatt 5400 ttaaaaatga tcgctcacac tatatcggac atagtaaaaa tacagatata aaagctttag 5460 aatttctaga aaaaacttac aaaataaaac tatattgctt atgtcctaac agtcttttag 5520 caaattttat agaactagcg ccaaatttaa attcaaattt tatcatacaa gaaaaaaata 5580 actacactaa agatatactc ataccttcta gtgaggctta tggaaaattt tcaaaaaata 5640 ttaattttaa aaaaataaaa attaaagaaa atgtttatta caagttgata aaagatctat 5700 taagattacc tagtgatata aagcattatt tcaaaggaaa ataaatgaaa gaaataaaaa 5760 ttcaaaatat aatcataagt gaagaaaaag cacccttagt cgtacctgaa ataggcatta 5820 atcataatgg tagtttagaa ctagctaaaa ttatggtaga tgcagccttt agcgcaggtg 5880 ctaagattat aaagcatcaa acccacatcg ttgaagatga gatgagtaaa gccgctaaaa 5940 aagtaattcc tggtaatgca aaaataagca tttatgagat tatgcaaaaa tgtgctttga 6000 attataaaga tgagctagca cttaaagaat acacagaaaa attag 6045 // |
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