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EBI DbfetchID EF091821; SV 1; linear; genomic DNA; STD; PRO; 6047 BP. XX AC EF091821; XX DT 25-NOV-2006 (Rel. 89, Created) DT 27-FEB-2007 (Rel. 90, Last updated, Version 2) XX DE Campylobacter jejuni strain GB22 putative glucosyltransferase, putative DE glycosyltransferase, CgtA (cgtA), CgtB (cgtB), and CstII (cstII) genes, DE complete cds; and NeuB1 (neuB1) gene, partial cds. XX KW . XX OS Campylobacter jejuni OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Campylobacteraceae; Campylobacter. XX RN [1] RP 1-6047 RX DOI; 10.1128/IAI.00872-06 RX PUBMED; 17261613. RA Godschalk P.C., Kuijf M.L., Li J., StMichael F., Ang C.W., Jacobs B.C., RA Karwaski M.F., Brochu D., Moterassed A., Endtz H.P., van Belkum A., RA Gilbert M.; RT "Structural characterization of Campylobacter jejuni lipooligosaccharide RT outer cores associated with Guillain-Barre and Miller Fisher syndromes"; RL Infect. Immun. 75(3):1245-1254(2007). XX RN [2] RP 1-6047 RA Gilbert M., Godschalk P.C.R., Karwaski M.-F., Leclerc S., Endtz H.P.; RT "Sequencing of the lipooligosaccharide biosynthesis locus of Campylobacter RT jejuni GB22"; RL Unpublished. XX RN [3] RP 1-6047 RA Gilbert M., Godschalk P.C.R., Karwaski M.-F., Leclerc S., Endtz H.P.; RT ; RL Submitted (28-OCT-2006) to the EMBL/GenBank/DDBJ databases. RL Institute for Biological Sciences, National Research Council Canada, 100 RL Sussex Drive, Ottawa, Ontario K1A 0R6, Canada XX FH Key Location/Qualifiers FH FT source 1..6047 FT /organism="Campylobacter jejuni" FT /strain="GB22" FT /serotype="HS:13/64" FT /mol_type="genomic DNA" FT /db_xref="taxon:197" FT CDS 57..1313 FT /codon_start=1 FT /transl_table=11 FT /product="putative glucosyltransferase" FT /note="Orf1" FT /db_xref="GOA:Q9F0N2" FT /db_xref="InterPro:IPR001173" FT /db_xref="UniProtKB/TrEMBL:Q9F0N2" FT /protein_id="ABK63952.1" FT /translation="MNLKQISVIIIVKNAEQTLLECLNSLKDFDEIILLNNESIDNTLN FT IANKFKKDFANLYIYHNAFIGFGALKNLALSYAKNDWILSIDADEVLENECIKELKNLK FT LQEDNIIALSRKNLYKGEWIKACGWWPDYVLRIFNKNFTRFNDNLVHESLVLPSNAKKI FT YLKNGLKHYSYKDISHLIDKMQYYSSLWAKQNIHKKSGVLKANLRAFWTFFRNYFLKNG FT FLYGYKGFIISVCSALGTFFKYMKLYELQRQKPKTCALIIITYNQKERLKLVLDSVKNL FT AFLPNEVLIADDGSKEDTARLIEEYQKDFPCPLKHIWQEDEGFKLSKSRNKTIKNADSE FT YIIVIDGDMILEKDFIKEHLEFAQRKLFLQGSRVILNKKESEEILNKDDYRIIFNKKDF FT KSSKNSFLAKIFYSLSKKR" FT CDS 1609..2778 FT /codon_start=1 FT /transl_table=11 FT /product="putative glycosyltransferase" FT /note="Orf2" FT /db_xref="GOA:A0T3E9" FT /db_xref="InterPro:IPR001173" FT /db_xref="UniProtKB/TrEMBL:A0T3E9" FT /protein_id="ABK63953.1" FT /translation="MKKIGVVIPIYNVEKYLRECLDSVINQTYTNLEIILVNDGSTDEH FT SLNIAKEYTLKDKRITLFDKKNGGLSSARNIGIEYFSGEYKLKNKTQHIKENSLIEFQL FT DGNNPYNIYKAYKSSQAFNNEKDLTNFTYPSIDYIIFLDSDNYWKLNCIEECVIRMKNV FT DVLWFDHDCTYEDNIKNKHKKTRMEIFDFKKECIITPKEYANRALSIGSRDISFGWNGM FT IDFNFLKQIKLKFINFIINEDIHFGIILFASANKIYVLSQKLYLCRLRANSISNHDKKI FT TKANVSEYFKDIYETFGENAKEAKNYLKAASRVITALKLIEFFKDQKNENALAIKETFL FT PCYAKKALMIKKFKKDPLNLKEQLVLIKPFIQTKLPYDIWKFWQKIKNI" FT gene 2848..3891 FT /gene="cgtA" FT CDS 2848..3891 FT /codon_start=1 FT /transl_table=11 FT /gene="cgtA" FT /product="CgtA" FT /note="glycosyltransferase; FT beta-1,4-N-acetylgalactosaminyltransferase" FT /db_xref="GOA:Q9F0N1" FT /db_xref="InterPro:IPR010446" FT /db_xref="UniProtKB/TrEMBL:Q9F0N1" FT /protein_id="ABK63954.1" FT /translation="MLFQSYFVKIICLFIPFRKIRHKIKKTFLLKNIQRDKIDSYLPKK FT TLVQINKYNNEDLIKLNKAIIREGHKGYFNYDEKSKDPKSPLNPWAFIRVKNEAITLKA FT SLESILPAIQRGVIGYNDCTDGSEEIILEFCKQYPSFIPIKYPYEIQIQNPKSEENKLY FT SYYNYVASFIPKDEWLIKIDVDHIYDAKKLYKSFYIPKNKYDVVSYSRVDIHYFNDNFF FT LCKDNNGNILKEPGDCLLINNYNLKWKEVLIDRINNNWKKATKQSFSSNIHSLEQLKYK FT HRILFHTELNNYHFPFLKKHRAQDIYKYNWISIEEFKKFYLQNINHKIEPSMISKETLK FT KIFLTLF" FT gene complement(3877..4782) FT /gene="cgtB" FT CDS complement(3877..4782) FT /codon_start=1 FT /transl_table=11 FT /gene="cgtB" FT /product="CgtB" FT /note="glycosyltransferase; beta-1,3-galactosyltransferase" FT /db_xref="GOA:Q9F0N0" FT /db_xref="InterPro:IPR001173" FT /db_xref="UniProtKB/TrEMBL:Q9F0N0" FT /protein_id="ABK63955.1" FT /translation="MFKISIILPTYNVEQYIARAIESCINQTFKDIEIIVVDDCGNDNS FT INIAKEYSKKDKRIKIIHNEKNLGLLRARYEGVKVANSPYIMFLDPDDYLELNACEECI FT KILDEQDEVDLVFFNAIVESNVISYKKFDFNSGFYSKKEFVKKIIAKKNLYWTMWGKLI FT RKKLYLEAFASLKLEKDVKINMAEDVLLYYPMLSQAQKIAYMNCNLYHYVPNNNSICNT FT KNEVLVKNNIQELQLVLNYLRQNYILNKYCSVLYVLIKYLLYIQIYKIKRTKLMVTLLA FT KINILTLKILFKYKKFLKQC" FT gene 4871..5746 FT /gene="cstII" FT CDS 4871..5746 FT /codon_start=1 FT /transl_table=11 FT /gene="cstII" FT /product="CstII" FT /note="sialyltransferase; alpha-2,3-sialyltransferase" FT /db_xref="GOA:Q9F0M9" FT /db_xref="InterPro:IPR009251" FT /db_xref="UniProtKB/TrEMBL:Q9F0M9" FT /protein_id="ABK63956.1" FT /translation="MKKVIIAGNGPSLKEIDYSRLPNDFDVFRCNQFYFEDKYYLGKKC FT KAVFYTPGFFFEQYYTLKHLIQNQEYETELIMCSNYNQAHLENENFVKTFYDYFPDAHL FT GYDFFKQLKEFNAYFKFHEIYFNQRITSGVYMCAVAIALGYKEIYLSGIDFYQNGSSYA FT FDTKQENLLKLAPDFKNDRSHYIGHSKNTDIKALEFLEKTYKIKLYCLCPNSLLANFIE FT LAPNLNSNFIIQEKNNYTKDILIPSSEAYGKFSKNINFKKIKIKENVYYKLIKDLLRLP FT SDIKHYFKGK" FT gene 5747..>6047 FT /gene="neuB1" FT CDS 5747..>6047 FT /codon_start=1 FT /transl_table=11 FT /gene="neuB1" FT /product="NeuB1" FT /note="sialic acid synthase" FT /db_xref="GOA:A0T3F3" FT /db_xref="InterPro:IPR013785" FT /db_xref="UniProtKB/TrEMBL:A0T3F3" FT /protein_id="ABK63957.1" FT /translation="MKEIKIQNIIISEEKAPLVVPEIGINHNGSLELAKIMVDAAFSAG FT AKIIKHQTHIVEDEMSKAAKKVIPGNAKISIYEIMQKCALNYKDELALKEYTEKL" XX SQ Sequence 6047 BP; 2453 A; 721 C; 793 G; 2080 T; 0 other; tttttttttc atagacgctt tgctagttat aatgaggaaa tttacaaggg tgcaaaatga 60 atctaaagca aataagcgtt attatcatcg taaaaaatgc tgagcaaact ttgcttgagt 120 gtttaaattc tttaaaagat tttgatgaaa ttattttact taacaatgaa agcattgata 180 ataccctaaa tatagctaat aaatttaaaa aagattttgc taatttatat atttatcaca 240 atgcttttat aggttttgga gctttaaaaa atcttgcttt aagttatgca aaaaatgatt 300 ggattttaag cattgatgct gatgaagtgc ttgaaaatga gtgtattaaa gagcttaaaa 360 atttaaaact tcaagaagat aatatcatcg cacttagccg taaaaatctc tataaaggcg 420 aatggataaa ggcatgtggt tggtggcctg attatgtttt gagaattttt aataaaaatt 480 tcactcgttt taatgataat ttagtacatg aaagccttgt tttgccaagt aatgctaaaa 540 aaatttatct taaaaatgga ttgaagcatt attcttataa ggatatctct cacttaattg 600 acaaaatgca gtactactca agtctttggg caaaacaaaa tatacacaaa aaaagtggtg 660 ttttaaaagc aaatttaaga gctttttgga ctttttttag aaattatttt ttaaaaaatg 720 gctttttata tggttataag ggttttataa ttagcgtttg ttctgcattg ggaacatttt 780 ttaaatatat gaaattatat gaacttcaaa gacaaaaacc aaaaacttgc gctttaataa 840 taataactta taatcaaaaa gaacgcctta aactagtgct tgatagtgtt aaaaatctag 900 cctttttacc caatgaagtt ttaatcgcag atgatggtag caaagaagat acagcaaggc 960 ttattgaaga atatcaaaaa gattttcctt gtcctttaaa acacatttgg caagaagatg 1020 aagggtttaa acttagtaaa agtcgcaaca aaactataaa aaacgctgat agtgaatata 1080 taatagttat tgatggtgat atgattttgg aaaaagattt cataaaagaa catttagaat 1140 ttgcacaaag aaagcttttt ttacaaggtt caagagtaat tttaaataaa aaagaaagcg 1200 aagaaatttt aaacaaagat gattatcgca taatttttaa taaaaaagat tttaaaagtt 1260 ctaaaaattc ttttttagct aaaatatttt acagtctttc aaaaaaaaga tgaaaaaatc 1320 ttttaaaaaa ccactcttat taaaggtatt aggggttgca atatgagttt ttttaaaact 1380 gattttgatg aacttgatgg ttttaatgaa aattttattg gttggggtag agaagatagt 1440 gaatttgttg ctagattttt atttaataaa ggcattttta gacgattaaa atttaaagct 1500 attgcttatc atatttatca caaagaaaat agcaaaaaaa tgcttgaaag caatcatcaa 1560 atttatttag ataccatcaa aaataaaaag atttcttgga gataaaacat gaagaaaata 1620 ggtgtagtta taccaatcta taatgtagaa aaatatttaa gagaatgttt agatagcgtt 1680 atcaatcaaa cttatactaa cttagaaatc atacttgtca atgatggtag cacagatgaa 1740 cactcactca atattgcaaa agaatatacc ttaaaagata aaagaataac tctttttgat 1800 aagaaaaatg ggggtttaag ttcagctaga aatataggta tagaatactt tagcggggaa 1860 tataaattaa aaaacaaaac tcaacatata aaagaaaatt ctttaataga atttcaattg 1920 gatggtaata atccttataa tatatataaa gcatataaaa gctctcaagc ttttaataat 1980 gaaaaagatt taaccaattt tacttaccct agtatagatt atattatatt cttagatagt 2040 gataattatt ggaaactaaa ctgcatagaa gaatgcgtta taagaatgaa aaatgtggat 2100 gtattgtggt ttgaccatga ttgcacctat gaagacaata taaaaaataa gcacaaaaaa 2160 acaaggatgg aaatttttga ttttaaaaaa gaatgtataa tcactccaaa agaatatgca 2220 aatcgagcat taagtatagg atctagagat atttcttttg gatggaatgg aatgattgat 2280 tttaattttt taaagcaaat taaacttaaa tttataaatt ttattatcaa tgaagatata 2340 cactttggga taattttgtt tgctagtgct aataaaattt atgttttatc acaaaagttg 2400 tatttgtgtc gtttaagagc aaacagtata tcaaatcatg ataagaagat tacaaaagca 2460 aatgtgtcag agtattttaa agatatatat gaaactttcg gggaaaacgc taaggaagca 2520 aaaaattatt taaaagcagc aagcagggtt ataactgctt taaaattgat agaatttttt 2580 aaagatcaaa aaaacgaaaa tgcacttgct ataaaagaaa catttttacc ttgctatgcc 2640 aaaaaagctt taatgattaa aaaatttaaa aaagatcctt taaatttaaa ggaacaatta 2700 gttttaatta aaccttttat tcaaacaaaa cttccttatg atatttggaa attttggcaa 2760 aaaataaaaa atatttaata ataaaaatat aaaaaattaa ttaattttta ggtataatca 2820 ctataattat aggagaaaat attttatatg ctatttcaat catactttgt gaaaataatt 2880 tgcttattca tcccttttag aaaaattaga cataaaataa aaaaaacatt tttactaaaa 2940 aacatacaac gagataaaat cgattcttat ttaccaaaaa aaactcttgt gcaaattaat 3000 aaatacaaca atgaagattt aattaaactt aataaagcta ttatacggga ggggcataaa 3060 ggatatttta attatgatga aaaatctaaa gatccaaaat ctcctttgaa tccttgggct 3120 tttatacgag taaaaaatga agctattacc ttaaaagctt ctcttgaaag catattgcct 3180 gctatccaaa gaggtgttat aggatataat gattgtaccg atggaagtga agaaataatt 3240 ctagaatttt gcaaacaata tccttcattt ataccaataa aatatcctta tgaaattcaa 3300 attcaaaacc caaaatcaga agaaaataaa ctctatagct attataatta tgttgcaagt 3360 tttataccaa aagatgagtg gcttataaaa atagatgtgg atcatatcta tgatgctaaa 3420 aaactttata aaagcttcta tataccaaaa aacaaatatg atgtagttag ttattcaagg 3480 gttgatattc actattttaa tgataatttt tttctttgta aagataataa tggcaatata 3540 ttgaaagaac caggagattg cttgcttatc aataattata acttaaaatg gaaagaagta 3600 ttaattgaca gaatcaataa caattggaaa aaagcaacaa aacaaagttt ttcttcaaat 3660 atacactctt tagagcaatt aaagtataaa cacaggatat tatttcacac tgaattaaat 3720 aattatcatt ttcctttttt aaaaaaacat agagctcaag atatttataa atataattgg 3780 ataagtattg aagaatttaa aaaattctat ttacaaaata ttaatcataa aatagaacct 3840 tctatgattt caaaagaaac tctaaaaaaa atattcttaa cattgtttta aaaatttttt 3900 atatttaaat aaaattttta aagttaaaat atttatttta gctaacaatg taaccattaa 3960 ttttgttctt tttattttat atatttgaat atatagcaaa tatttaatta gcacatagag 4020 aacgctacaa tacttgttta aaatataatt ttgccttaaa tagtttaaaa ccaactgcaa 4080 ctcttgaata ttatttttaa caagcacttc attcttagta ttacaaattg aattattatt 4140 aggcacgtaa tgatataaat tacagttcat atatgctatt ttttgagctt gacttaacat 4200 tggataatat aacaatacat cttcagccat attgatttta acatctttct cgagttttaa 4260 actcgcaaaa gcttctaaat acaatttctt tcttataagt ttcccccaca tagtccaata 4320 taaatttttc tttgcaataa tttttttcac aaactctttt ttgctataaa aaccagaatt 4380 aaagtcaaac tttttatatg aaataacatt actttcaaca atagcattga aaaacactaa 4440 atcaacttca tcctgttcat ctaaaatttt tatacactct tcacaagcat ttagttccaa 4500 ataatcatca ggatctaaaa acattatata aggagagttt gctactttca caccttcata 4560 tcttgctctt aaaagaccta agtttttttc attgtggatt atttttattc ttttgtcttt 4620 tttagagtat tctttggcta tatttatact attatcattt ccacaatcat caactacaat 4680 tatttctata tctttaaaag tctgattgat acagctttct attgcccttg ctatatattg 4740 ttccacatta taagttggta agatgattga aattttaaac atatttattc cttattttat 4800 tataatttaa ttataacata aaatctattt tgataaaatc gttaaaaata aatcttgatg 4860 gaaaataatc atgaaaaaag ttattattgc tggaaatgga ccaagtttaa aagaaattga 4920 ttattcaagg ctaccaaatg attttgatgt atttagatgt aatcaatttt attttgaaga 4980 taaatactat cttggtaaaa aatgcaaagc agtgttttac acccctggtt tcttctttga 5040 gcaatactac actttaaaac atttaatcca aaatcaagaa tatgagaccg aactaattat 5100 gtgttctaat tacaaccaag ctcatctaga aaatgaaaat tttgtaaaaa ctttttacga 5160 ttattttcct gatgctcatt tgggatatga tttttttaaa caacttaaag aatttaatgc 5220 ttattttaaa tttcacgaaa tttatttcaa tcaaagaatt acctcagggg tctatatgtg 5280 tgcagtagcc atagccctag gatacaaaga aatttatctt tcgggaattg atttttatca 5340 aaatgggtca tcttatgctt ttgataccaa acaagaaaat cttttaaaac tagcccctga 5400 ttttaaaaat gatcgctcac actatatcgg acatagtaaa aatacagata taaaagcttt 5460 agaatttcta gaaaaaactt acaaaataaa actatattgc ttatgtccta acagtctttt 5520 agcaaatttt atagaactag cgccaaattt aaattcaaat tttatcatac aagaaaaaaa 5580 taactacact aaagatatac tcataccttc tagtgaggct tatggaaaat tttcaaaaaa 5640 tattaatttt aaaaaaataa aaattaaaga aaatgtttat tacaagttga taaaagatct 5700 attaagatta cctagtgata taaagcatta tttcaaagga aaataaatga aagaaataaa 5760 aattcaaaat ataatcataa gtgaagaaaa agcaccctta gtcgtacctg aaataggcat 5820 taatcataat ggtagtttag aactagctaa aattatggta gatgcagcct ttagcgcagg 5880 tgctaagatt ataaagcatc aaacccacat cgttgaagat gagatgagta aagccgctaa 5940 aaaagtaatt cctggtaatg caaaaataag catttatgag attatgcaaa aatgtgcttt 6000 gaattataaa gatgagctag cacttaaaga atacacagaa aaattag 6047 // |
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