EBI Dbfetch

ID   EF087924; SV 1; linear; mRNA; STD; PLN; 1577 BP.
XX
AC   EF087924;
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DT   01-DEC-2007 (Rel. 94, Created)
DT   25-MAR-2009 (Rel. 100, Last updated, Version 2)
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DE   Picea sitchensis clone WS02739_P04 unknown mRNA.
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KW   FLI_CDNA.
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OS   Picea sitchensis (Sitka spruce)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Coniferopsida; Coniferales; Pinaceae; Picea.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-1577
RX   DOI; 10.1186/1471-2164-9-484
RX   PUBMED; 18854048.
RA   Ralph S.G., Chun H.J., Kolosova N., Cooper D., Oddy C., Ritland C.E.,
RA   Kirkpatrick R., Moore R., Barber S., Holt R.A., Jones S.J., Marra M.A.,
RA   Douglas C.J., Ritland K., Bohlmann J.;
RT   "A conifer genomics resource of 200,000 spruce (Picea spp.) ESTs and 6,464
RT   high-quality, sequence-finished full-length cDNAs for Sitka spruce (Picea
RT   sitchensis)";
RL   BMC Genomics 9:484-484(2008).
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RN   [2]
RP   1-1577
RA   Ralph S.G., Kirkpatrick R., Chun H.J.E., Palmquist D., Wynhoven B.,
RA   Kolosova N., Cooper N., Oddy C., Jancsik S., Ritland C.E., Douglas C.J.,
RA   Butterfield Y.S.N., Liu J., Stott J., Yang G., Barber S., Holt R.A.,
RA   Siddiqui A., Jones S.J.M., Marra M.A., Ritland K., Bohlmann J.;
RT   ;
RL   Submitted (26-OCT-2006) to the EMBL/GenBank/DDBJ databases.
RL   Genome BC Forest Genomics Program, University of British Columbia, Michael
RL   Smith Laboratories, 2185 East Mall, Rm. 321, Vancouver, British Columbia
RL   V6T 1Z4, Canada
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FH   Key             Location/Qualifiers
FH
FT   source          1..1577
FT                   /organism="Picea sitchensis"
FT                   /cultivar="FB3-425"
FT                   /mol_type="mRNA"
FT                   /sex="Hermaphrodite"
FT                   /clone_lib="SS-IL-A-FL-14"
FT                   /clone="WS02739_P04"
FT                   /tissue_type="Green portion of the leader tissue from one
FT                   year old clonal trees grown under greenhouse conditions in
FT                   standard potting soil mixture"
FT                   /db_xref="taxon:3332"
FT   CDS             85..1269
FT                   /codon_start=1
FT                   /product="unknown"
FT                   /note="similar to Arabisopsis thaliana At3g17390"
FT                   /db_xref="GOA:A9P2P4"
FT                   /db_xref="InterPro:IPR002133"
FT                   /db_xref="UniProtKB/Swiss-Prot:A9P2P4"
FT                   /protein_id="ABK27155.1"
FT                   /translation="METFLFTSESVNEGHPDKLCDQISDAVLDACLTQDPDSKVACETC
FT                   TKTNMVMVFGEITTKADVDYEQIVRKTCREIGFISDDVGLDADHCKVLVNIEQQSPDIA
FT                   QGVHGHFTKRPEEIGAGYQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNGTCAW
FT                   LRPDGKTQVTIEYRNDGGAMVPERVHTVLISTQHDETVTNDQIAADLKQHVIKPVIPEK
FT                   YLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRS
FT                   GAYIVRQAAKSIVAAGLARRCLVQVSYAIGVPEPLSVFVDSYGTGTIPDKVILELIKKN
FT                   FDFRPGMITINLDLKRGGNGRFQKTAAYGHFGRDDPDFTWEIVKPLKQEKALPA"
XX
SQ   Sequence 1577 BP; 418 A; 344 C; 415 G; 400 T; 0 other;
     gaaagcactt tgacctgtgc actgcttctc tgcctcctcc gcttcttact cattccaggg        60
     aaactctgct cgttaagaat cgagatggag accttcctct tcacatctga gtctgtgaac       120
     gagggacacc cagacaagct gtgtgaccaa atctctgatg cagtgttgga tgcatgcctc       180
     acccaggacc ctgacagtaa ggtagcttgc gagacttgca ctaaaacgaa catggtcatg       240
     gtttttggtg aaatcaccac caaagctgat gtcgactatg agcagatcgt tcgcaagacc       300
     tgcagggaga ttggtttcat ttctgacgat gtgggtctcg atgctgatca ctgcaaagtc       360
     ctggttaaca ttgaacagca gagccctgat attgcccagg gcgttcatgg acactttacc       420
     aagaggcctg aggagattgg agccggttac cagggtcaca tgtttggcta tgcaacagat       480
     gagacccctg agctgatgcc cctgactcat gtgctggcta ccaagctggg agcaaagctc       540
     acagaggtca gaaagaatgg aacctgcgcc tggttgagac ctgatggaaa gacccaagtg       600
     accattgagt acagaaatga cggtggtgcc atggttcctg agcgtgttca cactgttcta       660
     atctccactc agcatgatga gacagtgacc aatgaccaga ttgctgcaga tctgaagcag       720
     catgtgataa agccggtgat tcctgagaag tacctggacg agaacaccat attccacttg       780
     aacccatctg gccgatttgt gattggaggg cctcatggag atgcagggct aacggggaga       840
     aagatcatca tagacaccta tggagggtgg ggagctcatg gaggaggggc attctctggg       900
     aaggatccca ccaaggtgga ccgaagtggg gcatacatag ttagacaggc tgccaagagc       960
     attgttgcag ctgggcttgc aaggagatgc cttgtgcagg tctcttatgc catcggagtg      1020
     ccggagccat tgtctgtctt tgttgactcg tatggtacag ggaccattcc agataaggta      1080
     attctggagc tcataaaaaa gaactttgat ttcaggcctg gcatgatcac tatcaatctt      1140
     gatctgaaga gaggaggaaa tgggaggttc caaaagactg ctgcctatgg ccacttcggc      1200
     agggacgacc ccgatttcac ctgggagatt gtcaagcctc tcaagcagga gaaggctctc      1260
     ccggcctagt gaatgcccac cactcgttca ttcttgtgat ttataagctc aagttcagct      1320
     gagtgttgtt tggttttcca tactagtgga gtcattgttt ctttgctagg aaatgtttag      1380
     gatactagta gagtaattat ttctttgctg gggactgttg gcgataggat gctcaaactg      1440
     atcctatcag ggattcaaca tgtagaatac acttgctggg ctgagcaagt ggaaaatgag      1500
     aacatcacct acttatttaa agtcgcttca agtttacaaa ttggagtgtt ttctttttaa      1560
     taaaaaaaaa aaaaaaa                                                     1577
//