EBI Dbfetch

ID   EF084980; SV 1; linear; mRNA; STD; PLN; 1579 BP.
XX
AC   EF084980;
XX
DT   01-DEC-2007 (Rel. 94, Created)
DT   25-MAR-2009 (Rel. 100, Last updated, Version 2)
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DE   Picea sitchensis clone WS0283_N09 unknown mRNA.
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KW   FLI_CDNA.
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OS   Picea sitchensis (Sitka spruce)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Coniferopsida; Coniferales; Pinaceae; Picea.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-1579
RX   DOI; 10.1186/1471-2164-9-484
RX   PUBMED; 18854048.
RA   Ralph S.G., Chun H.J., Kolosova N., Cooper D., Oddy C., Ritland C.E.,
RA   Kirkpatrick R., Moore R., Barber S., Holt R.A., Jones S.J., Marra M.A.,
RA   Douglas C.J., Ritland K., Bohlmann J.;
RT   "A conifer genomics resource of 200,000 spruce (Picea spp.) ESTs and 6,464
RT   high-quality, sequence-finished full-length cDNAs for Sitka spruce (Picea
RT   sitchensis)";
RL   BMC Genomics 9:484-484(2008).
XX
RN   [2]
RP   1-1579
RA   Ralph S.G., Kirkpatrick R., Chun H.J.E., Palmquist D., Wynhoven B.,
RA   Kolosova N., Cooper N., Oddy C., Jancsik S., Ritland C.E., Douglas C.J.,
RA   Butterfield Y.S.N., Liu J., Stott J., Yang G., Barber S., Holt R.A.,
RA   Siddiqui A., Jones S.J.M., Marra M.A., Ritland K., Bohlmann J.;
RT   ;
RL   Submitted (26-OCT-2006) to the EMBL/GenBank/DDBJ databases.
RL   Genome BC Forest Genomics Program, University of British Columbia, Michael
RL   Smith Laboratories, 2185 East Mall, Rm. 321, Vancouver, British Columbia
RL   V6T 1Z4, Canada
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FH   Key             Location/Qualifiers
FH
FT   source          1..1579
FT                   /organism="Picea sitchensis"
FT                   /cultivar="FB3-425"
FT                   /mol_type="mRNA"
FT                   /sex="Hermaphrodite"
FT                   /clone_lib="SS-IB-A-FL-13"
FT                   /clone="WS0283_N09"
FT                   /tissue_type="Bark (with phloem and cambium attached) from
FT                   two year old clonal trees grown under greenhouse conditions
FT                   in standard potting soil mixture"
FT                   /db_xref="taxon:3332"
FT   CDS             88..1269
FT                   /codon_start=1
FT                   /product="unknown"
FT                   /note="similar to Arabisopsis thaliana At2g36880"
FT                   /db_xref="GOA:A9NUH8"
FT                   /db_xref="InterPro:IPR002133"
FT                   /db_xref="UniProtKB/Swiss-Prot:A9NUH8"
FT                   /protein_id="ABK24289.1"
FT                   /translation="MDTFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETC
FT                   TKTNMVMIFGEITTKANIDYEKIVRDTCRGIGFVSADVGLDADNCKVLVNIEQQSPDIA
FT                   QGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKDGTCPW
FT                   LRPDGKTQVTVEYKNEGGAMVPLRVHTVLISTQHDETVTNDEIAADLKEHVIKPVVPSQ
FT                   YLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRS
FT                   GAYIVRQAAKSVVAAGLARRCLVQVSYAIGVPEPLSVFVDTYGTGTGKIQDAEILKLIK
FT                   ENFDFRPGMISINLDLKRGGNMRFQKTAAYGHFGREDPDFTWETVKVLKWEKA"
XX
SQ   Sequence 1579 BP; 449 A; 294 C; 390 G; 446 T; 0 other;
     gatcgcttca ctccgttgtt catctgttag ctcttacgca cacgaggaga aacaggggat        60
     accattctgc tcttttttaa taccaagatg gacacctttc tctttacatc agagtctgtc       120
     aatgagggac accctgacaa gctttgtgat cagatttctg atgccatctt ggatgcttgc       180
     ttggagcaag atcctgaaag caaggttgca tgcgagacct gtacaaagac aaacatggta       240
     atgatctttg gagaaatcac aactaaagct aatatagact atgagaagat agtgagggac       300
     acctgtaggg gaattggatt cgtgtcagca gatgttggat tggatgcaga taattgtaag       360
     gtcttggtga acattgaaca gcaaagccct gacattgccc agggtgtcca tggccatctt       420
     actaagaagc ctgaagagat tggtgcagga gatcagggcc acatgtttgg gtatgctaca       480
     gatgagaccc cggagttgat gcctcttact catgtgctag caacaaagct tggagcaagg       540
     ttgactgaag tacgaaaaga tggaacctgc ccttggttga gaccagatgg aaaaacccaa       600
     gttactgttg agtataaaaa tgagggaggg gcaatggtcc cgttaagagt tcacactgtg       660
     ctcatctcta ctcaacatga tgaaactgta accaatgatg agattgcagc tgatctcaag       720
     gagcacgtca ttaagccggt tgttccttct caatatctgg atgaaaatac aatattccat       780
     ttgaacccat ctgggcgttt tgtgattgga gggcctcatg gcgatgctgg tctcactggg       840
     aggaaaataa ttatcgatac atatggtggt tggggtgctc atggtggtgg agccttttct       900
     ggaaaggatc ccaccaaggt ggatcgtagt ggtgcctaca ttgttagaca agctgccaag       960
     agtgttgttg ctgctgggct agcacgccgc tgccttgtgc aggtttcata tgccattggt      1020
     gtgcccgagc cactttctgt gtttgttgac acatatggaa ctggaactgg aaaaattcaa      1080
     gatgctgaaa tcctgaagtt gatcaaagaa aattttgact tccgccctgg catgatttct      1140
     atcaaccttg acctaaaacg gggaggcaat atgaggttcc agaaaacagc tgcgtatggc      1200
     cattttggtc gggaggatcc tgatttcact tgggagactg taaaggtcct taagtgggag      1260
     aaagcttgaa actgtggaat acgatgcaga aagaatgttt aaaagcaaac cacgtttctt      1320
     agtgttcatt agggttagct attttctatc ttcaacaaac tcttaaatat accaacctca      1380
     attatgggtt tcatatttta ttcttcgaat ccgataagat ttttgatccg ttttagaaaa      1440
     acctctttca tattttgaaa gtgggaatat gtagaaccaa ttcaggagtt tggtttccga      1500
     cggaagtttg ggattttgct gtaattgggc attgtaattg gacgtagcag cttttgattg      1560
     cacaaaaaaa aaaaaaaaa                                                   1579
//