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EBI DbfetchID EF076703; SV 1; linear; genomic DNA; STD; PRO; 6036 BP. XX AC EF076703; XX DT 24-JAN-2007 (Rel. 90, Created) DT 27-FEB-2007 (Rel. 90, Last updated, Version 2) XX DE Campylobacter jejuni strain GB16 lipooligosaccharide biosynthesis gene DE locus, partial sequence. XX KW . XX OS Campylobacter jejuni OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Campylobacteraceae; Campylobacter. XX RN [1] RP 1-6036 RX DOI; 10.1128/IAI.00872-06 RX PUBMED; 17261613. RA Godschalk P.C., Kuijf M.L., Li J., StMichael F., Ang C.W., Jacobs B.C., RA Karwaski M.F., Brochu D., Moterassed A., Endtz H.P., van Belkum A., RA Gilbert M.; RT "Structural characterization of Campylobacter jejuni lipooligosaccharide RT outer cores associated with Guillain-Barre and Miller Fisher syndromes"; RL Infect. Immun. 75(3):1245-1254(2007). XX RN [2] RP 1-6036 RA Gilbert M., Godschalk P.C.R., Cunningham A., Leclerc S., Endtz H.P.; RT "Sequencing of the lipooligosaccharide biosynthesis locus of Campylobacter RT jejuni GB16"; RL Unpublished. XX RN [3] RP 1-6036 RA Gilbert M., Godschalk P.C.R., Cunningham A., Leclerc S., Endtz H.P.; RT ; RL Submitted (21-OCT-2006) to the EMBL/GenBank/DDBJ databases. RL Institute for Biological Sciences, National Research Council Canada, 100 RL Sussex Drive, Ottawa, Ontario K1A 0R6, Canada XX FH Key Location/Qualifiers FH FT source 1..6036 FT /organism="Campylobacter jejuni" FT /strain="GB16" FT /serotype="HS:13/65" FT /mol_type="genomic DNA" FT /db_xref="taxon:197" FT misc_feature <1..>6036 FT /note="lipooligosaccharide biosynthesis gene locus" FT CDS 57..1604 FT /codon_start=1 FT /transl_table=11 FT /product="putative two-domain glucosyltransferase" FT /note="glycosyltransferase; Orf1" FT /db_xref="GOA:Q1KYR8" FT /db_xref="InterPro:IPR019290" FT /db_xref="UniProtKB/TrEMBL:Q1KYR8" FT /protein_id="ABM74167.1" FT /translation="MNLKQISIIIIVKNAEQTLLECLNSLKDFDEIILLNNESSDNTLN FT IANEFKKDFANLYIYHNAFIGFGALKNLALSYAKNDWILSIDADEVLENECIKEFKNLE FT LQEDNIIALSRKNLYKGEWIKACGWWPDYVLRIFNKNFTRFNNNLVHESLILPSNAKKI FT HLKNGLRHYAFRDISHLINKMQYYSSLWTKQNIHKKSGVLKANLRAFWTFFRNYFLKSG FT FLYGYKGFIISVCNALGVFFKYMKLYELQRQKPETCALIITTYNQKERLKLVLDSVKNL FT AFLPNEVLIADDGSKEDTARLIEEYQKDFPCPLKHIWQEDEGFRAAKSRNNAIKASKSE FT YIILIDGDMILEKDFVKNHLEFAKRKVILQGSRVILNKNESEEILKNNNYSLAFNKKDF FT KSYKNSFLAKIIYKFSKIEQKFFDTKEIVRGSKTCNMSFFKVDFDKLDGFNENFIGWGR FT EDSEFVARFLFNKGIFRRLKFKAIAYHIYHKENSKKMLESNHQIYLDTIKNKKISWR" FT CDS 1608..2792 FT /codon_start=1 FT /transl_table=11 FT /product="putative glycosyltransferase" FT /note="Orf2" FT /db_xref="GOA:Q1KYR7" FT /db_xref="InterPro:IPR001173" FT /db_xref="UniProtKB/TrEMBL:Q1KYR7" FT /protein_id="ABM74168.1" FT /translation="MKKIGVVIPIYNVEKYLRECLDSVINQTYTNLEIILVNDGSTDEN FT SLNIAKEYTLKDKRITLFDKKNGGLSSARNVGIEYFSGEYKLKNKTQHIKENSLIEFQL FT DGNNPYNIYKAYKSSQAFNNEKDLTNLTYPSIDYIIFLDSDNYWKLNCIEECVIRMKNV FT DVLWFDHDCTYEDNIKNKHKKTRMEIFDFKKECIITPKEYANRALSVGSRDISFGWNGV FT IDFNFLKQIKLKFINFIINEDIHFGIILFASANKIYVLSQKLYLCRLRANSISNHDKKI FT TKANVSEYFKDIYETFGENAKEAKNYLKAASRVITALKLIEFFKDQKSENALAIKETFL FT PCYAKKALMIKKFKKDPLNLKEQLVLIKPFIQTKLPYDIWKFWQKIKKYLIIKI" FT CDS 2848..3906 FT /codon_start=1 FT /transl_table=11 FT /product="beta-1,4-N-acetylgalactosaminyltransferase" FT /note="glycosyltransferase; CgtA" FT /db_xref="GOA:Q93MQ2" FT /db_xref="InterPro:IPR010446" FT /db_xref="UniProtKB/TrEMBL:Q93MQ2" FT /protein_id="ABM74169.1" FT /translation="MLFQSYFVKIICLFIPFRKIRHKIKKTFLLKNIQRDKIDSYLPKK FT TLIQINKYNNEDLIKLNKAIIGGGHKGYFNYDEKSKDPKSPLNPWAFIRVKNEAITLKA FT SLESILPAIQRGVIGYNDCTDGSEEIILEFCKQYPSFIPIKYPYEIQIQNPKSEENKLY FT SYYNYVASFIPKDEWLIKIDVDHYYDAKKLYKSFYIPRKNYHVISYSRIDFIFNEEKFY FT VYRNKEGEILKAPGDCLAIQNTNLFWKEILIEDDTFKWNTAKNNIENAKSYEILKVRNR FT IYFTTELNNYHFPFIKNYRKNDYKQLNWVSLDDFIKNYKEKLKNQIDFKMLEYKTLKKV FT YKKLTSSASDKI" FT CDS complement(3878..4771) FT /codon_start=1 FT /transl_table=11 FT /product="beta-1,3-galactosyltransferase" FT /note="glycosyltransferase; CgtB" FT /db_xref="GOA:Q93MQ1" FT /db_xref="InterPro:IPR001173" FT /db_xref="UniProtKB/TrEMBL:Q93MQ1" FT /protein_id="ABM74170.1" FT /translation="MFKISIILPTYNVEQYIARAIESCINQTFKNIEIIVVDDCGSDKS FT IDIVKEYAKKDDRIKIIHNEENLKLLRARYEGVKVANSPYIMFLDPDDYLELNACEECM FT KILKNNEIDLLFFNAFVLENNNKIERKLNFQEKCYVKKDFLKELLKTKNLFWTVWAKVI FT KKELYLKAVGLISLENAKINMAEDVLLYYPLINISNTIFHLSKNLYNYQINNFSITKTL FT TLQNIKTNIQEQDNVLYLLKKMQYNYNFNLTLLKLIEYFLLIEKYSLSSKRNVLCFKIN FT IFFKKIQFKFYRLLKM" FT CDS 4860..5735 FT /codon_start=1 FT /transl_table=11 FT /product="alpha-2,3/8-sialyltransferase" FT /note="Cst-II" FT /db_xref="GOA:Q93MQ0" FT /db_xref="InterPro:IPR009251" FT /db_xref="UniProtKB/TrEMBL:Q93MQ0" FT /protein_id="ABM74171.1" FT /translation="MKKVIISGNGPSLKEIDYSRLPNDFDVFRCNQFYFEDKYYLGKKF FT KAVFYNPGLFFEQYYTLKHLIQNQEYETELIMCSNYNQAHLENENFVKTFYDYFPDAHL FT GYDFFKQLKEFNAYFKFHEIYLNQRITSGVYMCAVAIALGYKEIYLSGIDFYQNGSSYA FT FDTKQENLLKLAPDFKNDRSHYIGHSKNTDIKALEFLEKTYKIKLYCLCPNSLLANFIE FT LAPNLNSNFIIQEKNNYTKDILIPSSEAYGKFSKNINFKKIKIKENIYYKLIKDLLRLP FT SDIKHYFKGK" FT CDS 5736..>6036 FT /codon_start=1 FT /transl_table=11 FT /product="putative sialic acid synthase" FT /note="NeuB1" FT /db_xref="GOA:Q3ZR81" FT /db_xref="InterPro:IPR013785" FT /db_xref="UniProtKB/TrEMBL:Q3ZR81" FT /protein_id="ABM74172.1" FT /translation="MKEIKIQNIIISEEKAPLVVPEIGINHNGSLELAKIMVDAAFSAG FT AKIIKHQTHIVEDEMSKAAKKVIPGNAKISIYEIMQKCALDYKDELALKEYTEKL" XX SQ Sequence 6036 BP; 2455 A; 671 C; 817 G; 2093 T; 0 other; ttttttttcc atagacgctt tgcaagttat aatgaggaaa tttacaagga tgcaaaatga 60 atctaaagca aataagcatt attatcatcg taaaaaatgc tgagcaaact ttgcttgagt 120 gtttaaattc tttaaaagat tttgatgaaa ttattttact taacaatgaa agcagtgata 180 ataccctaaa tatagctaat gaatttaaaa aagattttgc taatttatat atttatcaca 240 atgcttttat aggttttgga gctttaaaaa atcttgcttt aagttatgca aaaaatgatt 300 ggattttaag cattgatgct gatgaagtgc ttgaaaatga gtgtattaaa gagtttaaaa 360 atttagagct tcaagaagat aatatcatcg cacttagtcg taaaaatctc tataaaggcg 420 aatggataaa ggcttgtggt tggtggcctg attatgtttt gagaattttt aataaaaatt 480 tcactcgttt taataataat ttagtgcatg aaagtcttat tctaccaagc aatgctaaaa 540 aaattcatct taaaaatgga ttaaggcatt atgcttttag agatatttct cacttaatta 600 ataaaatgca gtactactca agcctttgga caaaacaaaa tatacacaaa aaaagtggtg 660 ttttaaaagc aaatttaaga gctttttgga ctttttttag aaattatttt ttaaaaagtg 720 gctttttata cggctataaa ggctttataa ttagcgtatg caatgcctta ggggtgtttt 780 ttaaatacat gaaattatat gaacttcaaa gacaaaagcc agaaacttgt gctttaataa 840 taacaaccta taatcaaaaa gaacgcctta aattagtact tgatagtgtt aaaaatctag 900 cttttttacc caatgaagtt ttaatcgcag atgatggtag caaagaagat acagcaaggc 960 ttattgaaga atatcaaaaa gattttcctt gccctttaaa acacatttgg caagaagatg 1020 agggttttcg tgctgcaaaa agtagaaata atgctattaa agcttctaaa agtgaatata 1080 taattttaat tgatggtgat atgattttag aaaaagactt tgtaaaaaat catttagaat 1140 ttgcgaaacg caaagtaatt ttacaaggtt caagagtaat tttaaataaa aatgaaagcg 1200 aagaaatctt aaaaaacaat aattatagtt tagcttttaa taaaaaagat tttaaaagtt 1260 ataaaaattc ctttttagct aaaattatct ataaattttc aaaaatagag caaaaatttt 1320 ttgataccaa ggaaatagta aggggcagta aaacctgtaa tatgagtttt tttaaagttg 1380 actttgataa acttgatggt tttaatgaaa attttattgg ttggggtaga gaagatagtg 1440 aatttgtggc tagattttta tttaataaag gtatttttag acgcttaaaa tttaaagcta 1500 ttgcttatca tatttatcac aaagaaaata gcaaaaaaat gcttgaaagc aatcatcaaa 1560 tttatttaga taccatcaaa aacaaaaaga tttcttggag ataaaacatg aagaaaatag 1620 gtgtagttat accaatctat aatgtagaaa aatatttaag agaatgttta gatagtgtta 1680 tcaatcaaac ttatactaac ttagaaatca tacttgtaaa tgatggtagt acagatgaaa 1740 actcactcaa tattgcaaaa gaatatacct taaaagataa aagaataact ctttttgata 1800 agaaaaatgg gggtttaagt tcagctagaa acgtaggtat agaatacttt agtggggagt 1860 ataaattaaa aaacaaaact caacatataa aagaaaattc tttaatagaa tttcaattag 1920 atggtaataa tccttataat atatataaag catataaaag ctctcaagct tttaataatg 1980 aaaaagattt aaccaatctt acttatccta gtatagatta tattatattc ttagatagtg 2040 ataattattg gaaattaaat tgtatagaag aatgtgttat aagaatgaaa aatgtggatg 2100 tattgtggtt tgaccatgat tgcacctatg aagacaatat aaaaaataag cacaaaaaaa 2160 caaggatgga aatttttgat tttaaaaaag aatgtataat cactccaaaa gaatatgcaa 2220 atcgagcatt aagtgtagga tctagagata tttcttttgg atggaatgga gtgattgatt 2280 ttaatttttt aaagcaaatt aaacttaaat ttataaattt tattatcaat gaagatatac 2340 actttgggat aattttgttt gctagtgcta ataaaattta tgttttatca caaaagttgt 2400 atttgtgccg tttaagagca aacagtatat caaatcatga taagaagatt acaaaagcaa 2460 atgtgtcaga gtattttaaa gatatatatg aaactttcgg ggaaaacgct aaggaagcaa 2520 aaaattattt aaaagcagca agcagggtta taactgcttt aaaattgata gaatttttta 2580 aagatcaaaa aagcgaaaat gcacttgcta taaaagaaac atttttacct tgctatgcca 2640 aaaaagcttt aatgattaaa aaatttaaaa aagatccttt aaatttaaag gaacaattag 2700 ttttaattaa accttttatt caaacaaaac ttccttatga tatttggaaa ttttggcaaa 2760 aaataaaaaa atatttaata ataaaaatat aaaaaattaa ttaattttta ggtataatca 2820 ctataattat aggagaaaat attttacatg ctatttcaat catactttgt gaaaataatt 2880 tgcttattca tcccttttag aaaaattaga cataaaataa aaaaaacatt tttactaaaa 2940 aacatacaac gagataaaat cgattcttat ctaccaaaaa aaactcttat acaaattaat 3000 aaatacaaca atgaagattt aattaaactt aataaagcta ttataggggg ggggcataaa 3060 ggatatttta attatgatga aaaatctaaa gatccaaaat ctcctttgaa tccttgggct 3120 tttatacgag taaaaaatga agctattacc ttaaaagctt ctcttgaaag catattgcct 3180 gctattcaaa gaggtgttat aggatataat gattgtaccg atggaagtga agaaataatt 3240 ctagaatttt gcaaacaata tccttcattt ataccaataa aatatcctta tgaaattcaa 3300 attcaaaacc caaaatcaga agaaaataaa ctctatagct attataatta tgttgcaagt 3360 tttataccaa aagatgagtg gctcataaaa atagatgtgg atcattatta tgatgcaaaa 3420 aaattatata agagttttta tatacctaga aaaaattatc atgtaattag ttactctagg 3480 atagatttta tatttaatga agaaaaattt tatgtttatc ggaataagga gggggagatt 3540 ttaaaagctc ctggagattg tttagcaata caaaacacta acttattttg gaaagaaata 3600 cttattgaag atgatacatt taagtggaat actgcaaaaa ataatataga gaatgcaaaa 3660 tcatatgaaa ttttaaaagt tagaaataga atttatttta ctacagaact taataattat 3720 cattttccat ttataaaaaa ttatagaaaa aatgattata agcagttaaa ttgggttagc 3780 ttagatgatt ttattaaaaa ttataaagaa aaattaaaaa atcaaataga ttttaaaatg 3840 ctagaataca aaacattaaa aaaagtgtac aaaaagctta catcttcagc aagcgataaa 3900 atttaaattg gattttttta aaaaaaatat tgattttaaa acaaagaaca tttcgcttgc 3960 ttgataatga gtatttttca attaataaaa aatactcaat taatttaagc aaagttaagt 4020 taaaattgta attatattgc atcttcttta gaagatatag aacattatct tgttcttgta 4080 tatttgtttt tatattttgc aatgttaatg ttttggttat agagaaatta tttatttgat 4140 aattgtataa atttttactc aagtgaaata tagtatttga aatatttatc aaagggtagt 4200 ataataaaac atcttcagcc atatttattt tagcattttc tagcgatatt aaaccaacag 4260 ccttgagata taattctttt tttatgactt ttgcccacac tgtccaaaat aaatttttag 4320 tttttaatag ttcttttaaa aaatcttttt ttacataaca tttttcttga aaattcaact 4380 ttctttctat tttattgtta ttttccaata caaatgcatt aaaaaataat aaatctattt 4440 cattgttttt taaaattttc atacattctt cacaagcatt aagttctaaa taatcatcag 4500 gatctaaaaa cattatataa ggagagtttg ctacttttac accttcatat ctagctctta 4560 aaagttttaa attttcttca ttatgtatga tttttattct atcatctttt ttggcatatt 4620 ctttaactat atctatactt ttgtcacttc cacaatcatc aactacaatt atttctatat 4680 ttttaaaagt ctgattgata caactttcta ttgcccttgc tatatattgt tccacattat 4740 aagttggcaa gatgattgaa attttaaaca tatttattcc ttattttatt ataatttaat 4800 tataacataa aatctatttt gataaaatcg ttaaaaataa atcttgatgg aaaataatta 4860 tgaaaaaagt tattatttct ggaaatggac caagtttaaa agaaattgat tattcaaggc 4920 taccaaatga ttttgatgta tttagatgca atcaatttta ttttgaagat aaatactatc 4980 ttggtaaaaa attcaaagca gtattttaca atcctggtct tttttttgaa caatactaca 5040 ctttaaaaca tttaatccaa aatcaagaat atgagaccga actaattatg tgttctaatt 5100 acaaccaagc tcatctagaa aatgaaaatt ttgtaaaaac tttttacgat tattttcctg 5160 atgctcattt gggatatgat ttttttaaac aacttaaaga atttaatgct tattttaaat 5220 ttcacgaaat ttatctcaat caaagaatta cctcaggagt ctatatgtgt gcagtagcta 5280 tagccctagg atacaaagaa atttatcttt ctggaattga tttttatcaa aatgggtcat 5340 cttatgcttt tgataccaaa caagaaaatc ttttaaaact ggctcctgat tttaaaaatg 5400 atcgctcaca ctatatcgga catagtaaaa atacagatat aaaagcttta gaatttctag 5460 aaaaaactta caaaataaaa ctatattgct tatgtcctaa cagtctttta gcaaatttta 5520 tagaactagc gccaaattta aattcaaatt ttatcataca agaaaaaaat aactacacta 5580 aagatatact cataccttct agtgaggctt atggaaaatt ttcaaaaaat attaatttta 5640 aaaaaataaa aattaaagaa aatatttatt acaagttgat aaaagatcta ttaagattac 5700 ctagtgatat aaagcattat ttcaaaggaa aataaatgaa agaaataaaa atacaaaata 5760 taatcataag tgaagaaaaa gcacccttag tcgtacctga aataggcatt aatcataatg 5820 gcagtttaga actagctaaa attatggtag atgcagcctt tagcgcaggt gctaagatta 5880 taaagcatca aactcatatt gttgaagatg agatgagtaa ggccgctaaa aaagtaattc 5940 ctggtaatgc aaaaataagc atttatgaga ttatgcaaaa atgtgctttg gattataaag 6000 atgagctagc acttaaagaa tacacagaaa aattag 6036 // |
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