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EBI DbfetchID DS470442; SV 1; linear; genomic DNA; CON; INV; 43941 BP. XX AC DS470442; ABAV01000000; XX PR Project:12581; XX DT 24-AUG-2007 (Rel. 93, Created) DT 28-AUG-2007 (Rel. 93, Last updated, Version 2) XX DE Nematostella vectensis NEMVEscaffold_936 genomic scaffold, whole genome DE shotgun sequence. XX KW . XX OS Nematostella vectensis (starlet sea anemone) OC Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; OC Edwardsiidae; Nematostella. XX RN [1] RP 1-43941 RX DOI; 10.1126/science.1139158. RX PUBMED; 17615350. RA Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., Salamov A., RA Terry A., Shapiro H., Lindquist E., Kapitonov V.V., Jurka J., RA Genikhovich G., Grigoriev I.V., Lucas S.M., Steele R.E., Finnerty J.R., RA Technau U., Martindale M.Q., Rokhsar D.S.; RT "Sea anemone genome reveals ancestral eumetazoan gene repertoire and RT genomic organization"; RL Science 317(5834):86-94(2007). XX RN [2] RP 1-43941 RG US DOE Joint Genome Institute (JGI-PGF) RA Terry A., Salamov A., Zhou K., Grigoriev I., Pitluck S., Lucas S., RA Detter J.C., Glavina del Rio T., Shapiro H., Lindquist E., Putnam N., RA Rokhsar D.; RT ; RL Submitted (20-JUN-2007) to the EMBL/GenBank/DDBJ databases. RL US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA RL 94598-1698, USA XX CC URL -- http://www.jgi.doe.gov/nematostella CC JGI Project ID: 3633980 CC Source DNA and stock culture is available from Ulrich Technau CC (Ulrich.Technau@sars.uib.no) CC Contacts: Daniel Rokhsar (DSRokhsar@lbl.gov) CC Annotation done by JGI-PGF CC The JGI and collaborators endorse the principles for the CC distribution and use of large scale sequencing data adopted by the CC larger genome sequencing community and urge users of this data to CC follow them. It is our intention to publish the work of this CC project in a timely fashion and we welcome collaborative CC interaction on the project and analysis. CC (http://www.genome.gov/page.cfm?pageID=10506376). XX FH Key Location/Qualifiers FH FT source 1..43941 FT /organism="Nematostella vectensis" FT /strain="CH2 x CH6" FT /mol_type="genomic DNA" FT /dev_stage="larval" FT /db_xref="taxon:45351" FT gene complement(<255..>1348) FT /locus_tag="NEMVEDRAFT_v1g144092" FT mRNA complement(join(<255..445,997..>1348)) FT /locus_tag="NEMVEDRAFT_v1g144092" FT /product="predicted protein" FT CDS complement(join(<255..445,997..>1348)) FT /codon_start=1 FT /locus_tag="NEMVEDRAFT_v1g144092" FT /product="predicted protein" FT /db_xref="UniProtKB/TrEMBL:A7T393" FT /protein_id="EDO29571.1" FT /translation="CYRHLQHISYPCYRHLQHISYPCYRHLQHISYPCYRHLQHILYSC FT YRHLQHISYPCYRQLISYSCNRHLQHISYPCYRHLISYPCYRHLQHISYPCYRHLQRIS FT YSCYRHLQHISYLRISSIISYPCYSHLQHISYLCYRHLQHISYPCYRHLQHISYPCYRH FT LQHISYPCYRHLQHITYI" FT gene complement(<1691..>3343) FT /locus_tag="NEMVEDRAFT_v1g221722" FT mRNA complement(<1691..>3343) FT /locus_tag="NEMVEDRAFT_v1g221722" FT /product="predicted protein" FT CDS complement(<1691..3343) FT /codon_start=1 FT /locus_tag="NEMVEDRAFT_v1g221722" FT /product="predicted protein" FT /note="GO_function: nucleic acid binding [go id 3676]" FT /db_xref="GOA:A7T394" FT /db_xref="InterPro:IPR000571" FT /db_xref="InterPro:IPR006575" FT /db_xref="InterPro:IPR015940" FT /db_xref="InterPro:IPR016135" FT /db_xref="UniProtKB/TrEMBL:A7T394" FT /protein_id="EDO29572.1" FT /translation="MSKAPRSNYRPNRGGGKFNKPNEKPDNTDPTDSSVKPRVKGNQAT FT GNSDKPQTGTKNGRDRAKNTGSANQGKGNRSSGDTKSGARVETKANRSVGASRFGGKDG FT IKAPIRPDSRDRKGEQVNIIRQLESLQGPSSSEPINAGLDFNVIDEMPKKAIYAKGGRQ FT RSQAPVQNLHMTEQNQDMIHDMLKDLQIEPVSDALDDIDFDELERDEEYWGSIGDQRLQ FT IQDVLTFAGFDGAKTDENFTDGNPYALRKLLQSGFEKQRCIDALKKYDDDVGAALEALL FT VGACKLENIGKVNPEFTPELYEEAKFQRGEELVAIQSIYEDTFTEAIPDRLWIIKLSMP FT FIEELYTPKPKKNPRTEKEKKPTPNKNICRFYLKGNCRYGYLCKKSHAVEEVEEEKDDR FT HLQTDIKAMIFNLEVRFPEGSIYPFEPPIITLYTTHEFVPPHVSLNITLRLSNEAMELT FT KSGLPVLFSLISLLEDKDELMKYIERPPSEYSRSEESVRTLWVAQPGLQDAEGGGDDNR FT VDMTPKERRQKKDISVDEKETLNRKLKLQFAKQK" FT gene <3941..>16773 FT /locus_tag="NEMVEDRAFT_v1g144095" FT mRNA join(<3941..4085,4719..4811,8179..8262,8337..8680, FT 8895..8995,9254..9282,9359..9423,12463..12522,12642..12775, FT 14771..14891,15143..15222,15438..15480,15558..15637, FT 16203..16314,16654..>16773) FT /locus_tag="NEMVEDRAFT_v1g144095" FT /product="predicted protein" FT CDS join(3941..4085,4719..4811,8179..8262,8337..8680, FT 8895..8995,9254..9282,9359..9423,12463..12522,12642..12775, FT 14771..14891,15143..15222,15438..15480,15558..15637, FT 16203..16314,16654..16773) FT /codon_start=1 FT /locus_tag="NEMVEDRAFT_v1g144095" FT /product="predicted protein" FT /note="GO_function: ATP binding [go id 5524]" FT /db_xref="GOA:A7T395" FT /db_xref="InterPro:IPR003959" FT /db_xref="InterPro:IPR003960" FT /db_xref="InterPro:IPR007330" FT /db_xref="UniProtKB/Swiss-Prot:A7T395" FT /protein_id="EDO29570.1" FT /translation="MASRAPPRRGQSSEDNEDGLPAEIFNVRRHHKQAYAYIARALEVD FT EGQGSLETKKRAVEFYNRGIEEMEAGLLIPCIDEGEEWDKARRLQEKMEANLENTRERM FT DELVIIFFIIVVALLVSAGMMDDQPLLSARKTSSEPSQAWDVSKPTGPSYKQSKSYKNS FT TTVTTKRSQASPSFSSSSSSVNSTAGSSRTKPAKPAPMAAPRRYNPQVRRTKSTKPAMM FT AKQSCVDEQKKKISHLKGIDPKLANIIMDEILESGPAVHFSDIAGVDNAKKALQEIVIL FT PSLRPELWRGDPTLVLFQVLPYPPGSSHITLPRASTATSFTSCFFSISKRSSLVHPVVA FT SFFVKSLEDLASILTTSLFTIDEVDSLLTERREGEHEHSRRLKTEFLVSFDGVVADPEE FT RILVMGATNRPQELDDAALRRMVKRIHIPLPDKETRKVLLTKLLAKHHNPLSGAEIDRL FT ARMTEHYSGSDLTALARDAALGPIRDLNSDQLKSMAANEVRNITFQDFVNSLQIIRPSV FT GPETLKAYDDWNRLYGSNA" FT gap 9575..9624 FT /estimated_length=50 FT gap 11446..11547 FT /estimated_length=102 FT gap 13319..13600 FT /estimated_length=282 FT gap 14544..14593 FT /estimated_length=50 FT gap 16939..17280 FT /estimated_length=342 FT gap 18449..18498 FT /estimated_length=50 FT gap 19682..19993 FT /estimated_length=312 FT gap 21230..40869 FT /estimated_length=19640 FT gap 42286..43088 FT /estimated_length=803 XX CO join(ABAV01034089.1:1..9574,gap(50),ABAV01034090.1:1..1821,gap(102), CO ABAV01034091.1:1..1771,gap(282),ABAV01034092.1:1..943,gap(50), CO ABAV01034093.1:1..2345,gap(342),ABAV01034094.1:1..1168,gap(50), CO ABAV01034095.1:1..1183,gap(312),ABAV01034096.1:1..1236,gap(19640), CO ABAV01034097.1:1..1416,gap(803),ABAV01034098.1:1..853) // |
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