EBI Dbfetch

ID   DQ977296; SV 1; linear; genomic DNA; STD; MAM; 1301 BP.
XX
AC   DQ977296;
XX
DT   13-JAN-2007 (Rel. 90, Created)
DT   28-SEP-2008 (Rel. 97, Last updated, Version 2)
XX
DE   Pan paniscus HOXA7 (HOXA7) gene, complete cds.
XX
KW   .
XX
OS   Pan paniscus (pygmy chimpanzee)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Pan.
XX
RN   [1]
RP   1-1301
RX   DOI; 10.1534/genetics.108.090548
RX   PUBMED; 18689901.
RA   Nickel G.C., Tefft D.L., Goglin K., Adams M.D.;
RT   "An empirical test for branch-specific positive selection";
RL   Genetics 179(4):2183-2193(2008).
XX
RN   [2]
RP   1-1301
RA   Nickel G.C., Tefft D.L., Trevarthen K., Funt J., Adams M.D.;
RT   "Positive Selection in Transcription Factor Genes on the Human Lineage";
RL   Unpublished.
XX
RN   [3]
RP   1-1301
RA   Nickel G.C., Tefft D.L., Trevarthen K., Funt J., Adams M.D.;
RT   ;
RL   Submitted (31-AUG-2006) to the EMBL/GenBank/DDBJ databases.
RL   Dept. of Genetics, Case Western Reserve University, 10900 Euclid Ave,
RL   Cleveland, OH 44106, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1301
FT                   /organism="Pan paniscus"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9597"
FT   gene            <82..>1174
FT                   /gene="HOXA7"
FT   mRNA            join(<82..460,861..>1174)
FT                   /gene="HOXA7"
FT                   /product="HOXA7"
FT   CDS             join(82..460,861..1174)
FT                   /codon_start=1
FT                   /gene="HOXA7"
FT                   /product="HOXA7"
FT                   /db_xref="GOA:A1YGK7"
FT                   /db_xref="InterPro:IPR001356"
FT                   /db_xref="InterPro:IPR001827"
FT                   /db_xref="InterPro:IPR009057"
FT                   /db_xref="InterPro:IPR012287"
FT                   /db_xref="InterPro:IPR017995"
FT                   /db_xref="InterPro:IPR020479"
FT                   /db_xref="UniProtKB/Swiss-Prot:A1YGK7"
FT                   /protein_id="ABM54432.1"
FT                   /translation="MSSSYYVNALFSKYTAGASLFQNAEPTSCSFAPNSQRSGYGAGAG
FT                   AFASTVPGLYNVNSPLYQSPFASGYGLGADAYGNLPCASYDQNIPGLCSDLAKGACDKA
FT                   DEGALHGAAEANFRIYPWMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEX
FT                   XHALCLTERQIXXWFQNRRMKWKKEHKDDGPTAAAAPEGAVPSAAATAAADKADEEDDD
FT                   EQEEDEEE"
FT   exon            <82..460
FT                   /gene="HOXA7"
FT                   /number=1
FT   gap             629..728
FT                   /estimated_length=unknown
FT   exon            861..>1174
FT                   /gene="HOXA7"
FT                   /number=2
XX
SQ   Sequence 1301 BP; 269 A; 345 C; 372 G; 207 T; 108 other;
     gggtgtaatg ttatcatata tcacgctacc tcgtaaaacc gacactgaaa gctgccggac        60
     aacaaatcac aggtcaaaat tatgagttct tcgtattatg tgaacgcgct ttttagcaaa       120
     tatacggcgg gggcttctct gttccaaaat gccgagccga cttcttgctc ctttgcgccc       180
     aactcacaga gaagcggcta cggggcgggc gccggcgcct tcgcctcgac cgttccgggc       240
     ttatacaatg tcaacagccc cctttatcag agcccctttg cgtccggcta cggcctgggc       300
     gccgacgcct acggcaacct gccctgcgcc tcctacgacc aaaacatccc cgggctctgc       360
     agtgacctcg ccaaaggcgc ctgcgacaag gcggacgagg gcgcgctgca tggcgcggct       420
     gaggccaatt tccgcatcta cccctggatg cggtcttcag gtaggcgcag tcactaggcg       480
     ggccaggctg gcggagcggg accgggagcg gggagcgcgg cgctggggag cgcggggcgc       540
     ggggccggaa gagcggagcc aggctgttgc gagccggtag ccccgtgact cctggcgcag       600
     cctttctggt tttaattnna gcggaggcnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       660
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       720
     nnnnnnnngg cctggggcag aggggggtgc tcgctgggga ctaggccagg aggaaggtgc       780
     gggctctggg acagcagcct aacgagtgcc ctgtctactt gtctgtcctt gtgttcatgt       840
     gtctgcatgt ctgttctcag gacctgacag gaagcggggc cgccagacct acacgcgcta       900
     ccagacgctg gagctggaga aggagttcca cttcaaccgc tacctgacgc ggcgccgccg       960
     cattgaaann ncccacgcgc tctgcctcac cgagcgccag attaanntct ggttccagaa      1020
     ccgccgcatg aagtggaaga aagagcataa ggacgatggt ccgactgccg ccgcagcncc      1080
     cgagggcgcc gtgccctctg ccgccgccac tgctgccgcg gacaaggccg acgaggagga      1140
     cgatgatgaa caagaggaag acgaggagga atgaggggcc gatccggggc cctcgctgca      1200
     ccggacagtc ggaaaagcat ctttaagaga ctcactggtt ttacttacaa aaatgggaaa      1260
     aataaaagaa aatgtaaaaa acaaaaacaa aaacaaaaaa g                          1301
//