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EBI DbfetchID DQ870487; SV 1; linear; genomic RNA; STD; VRL; 2591 BP. XX AC DQ870487; XX DT 01-AUG-2007 (Rel. 92, Created) DT 26-MAR-2008 (Rel. 95, Last updated, Version 2) XX DE Rotavirus A strain S2 genotype G2P[4] segment 3, complete sequence. XX KW . XX OS Rotavirus A OC Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Rotavirus. XX RN [1] RP 1-2591 RX DOI; 10.1128/JVI.02257-07 RX PUBMED; 18216098. RA Matthijnssens J., Ciarlet M., Heiman E., Arijs I., Delbeke T., RA McDonald S.M., Palombo E.A., Iturriza-Gomara M., Maes P., Patton J.T., RA Rahman M., Van Ranst M.; RT "Full genome-based classification of rotaviruses reveals a common origin RT between human Wa-Like and porcine rotavirus strains and human DS-1-like and RT bovine rotavirus strains"; RL J. Virol. 82(7):3204-3219(2008). XX RN [2] RP 1-2591 RA Matthijnssens J., Van Ranst M.; RT ; RL Submitted (24-JUL-2006) to the EMBL/GenBank/DDBJ databases. RL Microbiology and Immunology, Laboratory of Clinical and Epidemiological RL Virology, Rega Institute for Medical Research, Minderbroedersstraat 10, RL 3000 Leuven, Belgium XX FH Key Location/Qualifiers FH FT source 1..2591 FT /organism="Rotavirus A" FT /segment="3" FT /strain="S2" FT /mol_type="genomic RNA" FT /country="Japan" FT /collection_date="1981" FT /note="genotype: G2P[4]" FT /db_xref="taxon:28875" FT CDS 50..2557 FT /codon_start=1 FT /product="VP3" FT /db_xref="GOA:A7J392" FT /db_xref="InterPro:IPR009697" FT /db_xref="InterPro:IPR011181" FT /db_xref="UniProtKB/Swiss-Prot:A7J392" FT /protein_id="ABI60846.1" FT /translation="MKVLALRHSVAQVYADTQVYTHDDSKDEYENAFLISNLTTHNILY FT LNYSVKTLQILNKSGIAAIEIQKMDELFTLIRCNFTYDYIDDVVYLHDYSYYTNNEIRT FT DQHWITKTNIEDYLLPGWKLTYVGYNGSDTRGHYNFSFRCQNAATDDDAIIEYIYSDEL FT DFQSFILKKIKERMTTSLPIARLSNRVFRDKLFKTLSVNHDKVVNIGPRNESMFTFLDH FT PSIKQFSNGPYLVKDTIKLKQERWLGKRLSQFDIGQYKNMLNVLTTLYQYYDIYHEKPI FT VYMIGSAPSYWIYDVKQYSDLKFETWDPLDTPYSNLHHKELFYINDVQRLKDNSILYID FT IRTDRGTMDWKEWRKMVERQTTDNLHIAYKYLSTGKAKICCVKMTAMDLELPISAKLLH FT HPTTEIRSEFYLMMDIWDSKNIKRFIPKGVLYSYINNTITENVFIQQPFKLKTLKNEYI FT IALYALSNDLNNREDVVKLINNQKKALITVRINNTFKDEPKVGFKNIYDWTFLPTDFET FT NGSIITSYDGCLGIFGLSISLASKPTGNNHLFILSGTDKYFKLDQFANHMSISRRSHQI FT RFSESATSYSGYIFRDLSNNNFNLIGTNVENSVSGHVYNALIYYRYNYSFDLKRWIYLH FT STGKASIEGGKYYEHAPIELIYACRSAREFAKLQDDVTVLRYSNEIENYINKVYSITYA FT DDPNYFIGVKFKNIPYKYNVKVPHLTFGVLNISEQMLPDVIVILKKFKNELFGMEITTS FT YTYMLSDEVYVANISGVLSTYFKIYNAFYKEQITFGQSRMFIPHVTLSFSNEKTVRIDN FT TKLYIDSIYLRKIKGDTVFDMTG" XX SQ Sequence 2591 BP; 993 A; 359 C; 439 G; 800 T; 0 other; ggctattaaa gcaatatcag tagtgtgttt tacctctgat ggtgtaaaca tgaaagtatt 60 agctttaaga catagtgtgg ctcaggtgta tgcagacact caggtgtaca cacacgatga 120 ttctaaagat gagtatgaaa atgcattctt aatttctaat ctcactacac ataatatatt 180 atatttaaat tatagtgtaa aaacactgca aatattaaat aaatctggta tagctgcaat 240 agagatacag aagatggatg agttattcac gctaattaga tgtaatttta catatgacta 300 tattgatgac gttgtttact tacatgacta ttcatattat actaataatg aaatacggac 360 tgaccaacat tggataacca agacaaatat agaagattat ttattaccag gatggaagct 420 gacatacgtt ggatacaatg gaagtgatac acgaggacat tataattttt cgtttagatg 480 tcagaatgca gctacagatg atgatgcaat aatagagtat atctattcag atgaattaga 540 cttccagagt tttatactca aaaagattaa agaaaggatg acaacatcat taccaatagc 600 aagactttca aatcgcgtat ttagagataa attatttaaa acgttatcag taaatcatga 660 taaggtagtc aatattggac ctagaaatga atctatgttt acttttttag accatccatc 720 aataaaacag ttctcgaatg gaccatatct agttaaagac acaattaaac tcaaacaaga 780 gagatggctt ggtaaaagat tatcacagtt tgacattggt caatacaaga atatgttaaa 840 tgtattaacg actttatatc aatattatga tatatatcat gaaaaaccaa ttgtatatat 900 gataggatca gctccctcgt attggatata tgacgtcaaa cagtattctg acttgaaatt 960 tgaaacgtgg gatccactag atacaccata ttctaattta catcataagg aattatttta 1020 cataaatgac gtgcaaagac tcaaagataa ttcgatatta tatatagata taagaacaga 1080 tagaggaact atggactgga aggaatggcg aaaaatggta gaaaggcaaa ctactgacaa 1140 tttgcatatt gcatacaaat atctatctac aggaaaagct aagatatgtt gcgttaaaat 1200 gaccgctatg gatttagaat taccaatatc tgcaaaatta cttcaccatc caactacaga 1260 gattagatca gagttttatc taatgatgga tatatgggac tccaaaaata ttaaaagatt 1320 cataccaaaa ggtgtattat actcatatat aaacaataca attactgaaa acgtattcat 1380 acaacaacct tttaagttga aaacattgaa aaacgaatat ataatagcac tttatgcttt 1440 atcaaatgat cttaacaata gagaagatgt ggtaaaacta attaataatc agaaaaaagc 1500 gttaataaca gtgagaatta acaatacgtt taaagatgaa ccaaaagttg gatttaaaaa 1560 catttacgat tggacatttt tgccaacgga ttttgaaacg aatggatcaa taattacttc 1620 atatgatgga tgtctgggta tctttggttt atcaatatcg ctagcttcaa aaccaactgg 1680 taataatcat ttattcattt taagtggcac ggacaagtat tttaaactgg atcaattcgc 1740 aaatcatatg agcatatcac gacgatcaca tcagatacga ttttcggagt cagctacttc 1800 atactcggga tatattttta gggatttgtc taataataat ttcaacttaa taggcacgaa 1860 tgtagagaat tcagtatccg gacacgtata taacgcgttg atttattata gatataatta 1920 ctcatttgat cttaaacgat ggatatactt acattcaaca ggtaaagcta gtattgaagg 1980 tggtaagtat tatgaacatg ctccaataga attgatttat gcatgcagat cagcgagaga 2040 attcgcgaaa ctgcaagatg atgtaacggt attaagatat tcaaatgaga tagaaaacta 2100 tatcaacaaa gtttatagta taacatacgc tgacgatcct aattacttta ttggagttaa 2160 gtttaaaaac attccttaca agtataacgt taaagtacca catctcacat ttggcgtgtt 2220 aaatatttct gaacagatgt taccagatgt aatagtaatt ttaaagaaat ttaagaatga 2280 gctatttgga atggaaataa caacgagtta tacatatatg ttatctgatg aggtgtatgt 2340 agcaaatata agtggtgtac tatcaacata tttcaaaatt tacaacgcgt tttataaaga 2400 acagatcaca tttgggcagt caagaatgtt tattcctcat gtaacgttga gttttagtaa 2460 tgagaaaacg gtgagaatag acaatacaaa actgtacata gattctattt atttaagaaa 2520 aataaaaggt gatacggtgt ttgatatgac tgggtgagct aaaaacttaa cacactggtc 2580 atgatgtgac c 2591 // |
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