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EBI DbfetchID DQ536321; SV 1; linear; genomic DNA; STD; PRO; 7186 BP. XX AC DQ536321; XX DT 30-JAN-2007 (Rel. 90, Created) DT 30-JAN-2007 (Rel. 90, Last updated, Version 1) XX DE Campylobacter jejuni strain GC033 lipooligosaccharide biosynthesis locus DE genomic sequence. XX KW . XX OS Campylobacter jejuni OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Campylobacteraceae; Campylobacter. XX RN [1] RP 1-7186 RX DOI; 10.1212/01.wnl.0000244468.22377.6b RX PUBMED; 17130419. RA Kimoto K., Koga M., Odaka M., Hirata K., Takahashi M., Li J., Gilbert M., RA Yuki N.; RT "Relationship of bacterial strains to clinical syndromes of RT Campylobacter-associated neuropathies"; RL Neurology 67(10):1837-1843(2006). XX RN [2] RP 1-7186 RA Gilbert M., Yuki N., Leclerc S., Cunningham A.; RT ; RL Submitted (09-MAY-2006) to the EMBL/GenBank/DDBJ databases. RL Institute for Biological Sciences, National Research Council Canada, 100 RL Sussex Drive, Ottawa, Ontario K1A 0R6, Canada XX FH Key Location/Qualifiers FH FT source 1..7186 FT /organism="Campylobacter jejuni" FT /strain="GC033" FT /mol_type="genomic DNA" FT /db_xref="taxon:197" FT misc_feature <1..>7186 FT /note="lipooligosaccharide biosynthesis locus" FT gene <1..333 FT /gene="waaC" FT CDS <1..333 FT /codon_start=1 FT /transl_table=11 FT /gene="waaC" FT /product="heptosyltransferase I" FT /note="WaaC" FT /db_xref="GOA:Q1KYS0" FT /db_xref="InterPro:IPR002201" FT /db_xref="UniProtKB/TrEMBL:Q1KYS0" FT /protein_id="ABG00179.1" FT /translation="LNLSGIDETHIELAPKFSLEELMAFTKMMDLIIGNDSGPTHLAFA FT LNKASITIFGATPSYRNAFQTHINKIIDAGKKIQNAKHIDKSDFCITRIEEEDIFKLAK FT GLLNEK" FT gene 323..1210 FT /gene="htrB" FT CDS 323..1210 FT /codon_start=1 FT /transl_table=11 FT /gene="htrB" FT /product="putative lipid A biosynthesis acyltransferase" FT /note="HtrB" FT /db_xref="GOA:Q1KYR9" FT /db_xref="InterPro:IPR004960" FT /db_xref="UniProtKB/TrEMBL:Q1KYR9" FT /protein_id="ABG00180.1" FT /translation="MKNSDRIYLSLYYILKFFVTFMPECILHFLALIVARITFYLNKKH FT RKIIDINLQICFPQYTQKERDKLSLKIYENFAQFGIDCLQNQNTTKEKILNKVNFINEN FT FLIDALALKRPIIFTTAHYGNWEILSLAYAAKYGAISIVGKKLKSEVMYEILSQSRTQF FT DIELIDKKGGIRQMLSALKKGRALGILTDQDCAENESVRLKFFNKEVNYQMGASLIAQR FT SNALIIPVYAYKEAGKFCIEFFKAKDSQNASLEELTLYQAQSCEEMIKKRPWEYFFFHR FT RFASYNEEIYKDAK" FT CDS 1207..2754 FT /codon_start=1 FT /transl_table=11 FT /product="putative two-domain glucosyltransferase" FT /db_xref="GOA:Q1KYR8" FT /db_xref="InterPro:IPR001173" FT /db_xref="InterPro:IPR019290" FT /db_xref="UniProtKB/TrEMBL:Q1KYR8" FT /protein_id="ABG00181.1" FT /translation="MNLKQISIIIIVKNAEQTLLECLNSLKDFDEIILLNNESSDNTLN FT IANEFKKDFANLYIYHNAFIGFGALKNLALSYAKNDWILSIDADEVLENECIKEFKNLE FT LQEDNIIALSRKNLYKGEWIKACGWWPDYVLRIFNKNFTRFNNNLVHESLILPSNAKKI FT HLKNGLRHYAFRDISHLINKMQYYSSLWTKQNIHKKSGVLKANLRAFWTFFRNYFLKSG FT FLYGYKGFIISVCNALGVFFKYMKLYELQRQKPETCALIITTYNQKERLKLVLDSVKNL FT AFLPNEVLIADDGSKEDTARLIEEYQKDFPCPLKHIWQEDEGFRAAKSRNNAIKASKSE FT YIILIDGDMILEKDFVKNHLEFAKRKVILQGSRVILNKNESEEILKNNNYSLAFNKKDF FT KSYKNSFLAKIIYKFSKIEQKFFDTKEIVRGSKTCNMSFFKVDFDKLDGFNENFIGWGR FT EDSEFVARFLFNKGIFRRLKFKAIAYHIYHKENSKKMLESNHQIYLDTIKNKKISWR" FT CDS 2758..3942 FT /codon_start=1 FT /transl_table=11 FT /product="putative glycosyltransferase" FT /db_xref="GOA:Q1KYR7" FT /db_xref="InterPro:IPR001173" FT /db_xref="UniProtKB/TrEMBL:Q1KYR7" FT /protein_id="ABG00182.1" FT /translation="MKKIGVVIPIYNVEKYLRECLDSVINQTYTNLEIILVNDGSTDEN FT SLNIAKEYTLKDKRITLFDKKNGGLSSARNVGIEYFSGEYKLKNKTQHIKENSLIEFQL FT DGNNPYNIYKAYKSSQAFNNEKDLTNLTYPSIDYIIFLDSDNYWKLNCIEECVIRMKNV FT DVLWFDHDCTYEDNIKNKHKKTRMEIFDFKKECIITPKEYANRALSVGSRDISFGWNGV FT IDFNFLKQIKLKFINFIINEDIHFGIILFASANKIYVLSQKLYLCRLRANSISNHDKKI FT TKANVSEYFKDIYETFGENAKEAKNYLKAASRVITALKLIEFFKDQKSENALAIKETFL FT PCYAKKALMIKKFKKDPLNLKEQLVLIKPFIQTKLPYDIWKFWQKIKKYLIIKI" FT gene 3998..5056 FT /gene="cgtA" FT CDS 3998..5056 FT /codon_start=1 FT /transl_table=11 FT /gene="cgtA" FT /product="putative FT beta-1,4-N-acetylgalactosaminyltransferase" FT /note="CgtA" FT /db_xref="GOA:Q93MQ2" FT /db_xref="InterPro:IPR010446" FT /db_xref="UniProtKB/TrEMBL:Q93MQ2" FT /protein_id="ABG00183.1" FT /translation="MLFQSYFVKIICLFIPFRKIRHKIKKTFLLKNIQRDKIDSYLPKK FT TLIQINKYNNEDLIKLNKAIIGGGHKGYFNYDEKSKDPKSPLNPWAFIRVKNEAITLKA FT SLESILPAIQRGVIGYNDCTDGSEEIILEFCKQYPSFIPIKYPYEIQIQNPKSEENKLY FT SYYNYVASFIPKDEWLIKIDVDHYYDAKKLYKSFYIPRKNYHVISYSRIDFIFNEEKFY FT VYRNKEGEILKAPGDCLAIQNTNLFWKEILIEDDTFKWNTAKNNIENAKSYEILKVRNR FT IYFTTELNNYHFPFIKNYRKNDYKQLNWVSLDDFIKNYKEKLKNQIDFKMLEYKTLKKV FT YKKLTSSASDKI" FT gene complement(5028..5921) FT /gene="cgtB" FT CDS complement(5028..5921) FT /codon_start=1 FT /transl_table=11 FT /gene="cgtB" FT /product="putative beta-1,3-galactosyltransferase" FT /note="CgtB" FT /db_xref="GOA:Q93MQ1" FT /db_xref="InterPro:IPR001173" FT /db_xref="UniProtKB/TrEMBL:Q93MQ1" FT /protein_id="ABG00184.1" FT /translation="MFKISIILPTYNVEQYIARAIESCINQTFKNIEIIVVDDCGSDKS FT IDIVKEYAKKDDRIKIIHNEENLKLLRARYEGVKVANSPYIMFLDPDDYLELNACEECM FT KILKNNEIDLLFFNAFVLENNNKIERKLNFQEKCYVKKDFLKELLKTKNLFWTVWAKVI FT KKELYLKAVGLISLENAKINMAEDVLLYYPLINISNTIFHLSKNLYNYQINNFSITKTL FT TLQNIKTNIQEQDNVLYLLKKMQYNYNFNLTLLKLIEYFLLIEKYSLSSKRNVLCFKIN FT IFFKKIQFKFYRLLKM" FT gene 6010..6885 FT /gene="cstII" FT CDS 6010..6885 FT /codon_start=1 FT /transl_table=11 FT /gene="cstII" FT /product="alpha-2,3/8-sialyltransferase" FT /note="CstII" FT /db_xref="GOA:Q93MQ0" FT /db_xref="InterPro:IPR009251" FT /db_xref="UniProtKB/TrEMBL:Q93MQ0" FT /protein_id="ABG00185.1" FT /translation="MKKVIISGNGPSLKEIDYSRLPNDFDVFRCNQFYFEDKYYLGKKF FT KAVFYNPGLFFEQYYTLKHLIQNQEYETELIMCSNYNQAHLENENFVKTFYDYFPDAHL FT GYDFFKQLKEFNAYFKFHEIYLNQRITSGVYMCAVAIALGYKEIYLSGIDFYQNGSSYA FT FDTKQENLLKLAPDFKNDRSHYIGHSKNTDIKALEFLEKTYKIKLYCLCPNSLLANFIE FT LAPNLNSNFIIQEKNNYTKDILIPSSEAYGKFSKNINFKKIKIKENIYYKLIKDLLRLP FT SDIKHYFKGK" FT gene 6886..>7186 FT /gene="neuB1" FT CDS 6886..>7186 FT /codon_start=1 FT /transl_table=11 FT /gene="neuB1" FT /product="putative sialic acid synthase" FT /note="NeuB1" FT /db_xref="GOA:Q3ZR81" FT /db_xref="InterPro:IPR013132" FT /db_xref="InterPro:IPR013785" FT /db_xref="UniProtKB/TrEMBL:Q3ZR81" FT /protein_id="ABG00186.1" FT /translation="MKEIKIQNIIISEEKAPLVVPEIGINHNGSLELAKIMVDAAFSAG FT AKIIKHQTHIVEDEMSKAAKKVIPGNAKISIYEIMQKCALDYKDELALKEYTEKL" XX SQ Sequence 7186 BP; 2892 A; 848 C; 1002 G; 2444 T; 0 other; ttaaatctta gtggtattga tgaaacacat atagaattag caccaaaatt tagccttgaa 60 gaactaatgg cttttacaaa aatgatggat cttatcatag gaaatgatag tggcccaaca 120 catttagctt ttgctttaaa taaggcatct attacgattt ttggtgcaac accaagctac 180 cgcaatgctt ttcaaactca tatcaataaa atcattgatg caggtaaaaa aatccaaaat 240 gccaagcata tcgataaaag tgatttttgt atcacgcgta tagaagaaga agatatcttc 300 aaacttgcca aaggtttact taatgaaaaa tagtgataga atatatctta gtctttatta 360 tattttgaaa ttttttgtta cttttatgcc tgagtgtatc ttgcattttt tagctttgat 420 tgtagcaaga atcacttttt atcttaacaa aaaacatcgc aagatcatcg atataaattt 480 gcaaatctgc ttccctcaat acactcaaaa agaacgcgat aaattgtctt taaaaattta 540 tgaaaatttt gctcaatttg gaattgattg tttacaaaat caaaacacca ccaaagaaaa 600 aattctcaat aaagtaaatt ttatcaatga aaattttctt atagacgctc tagctttaaa 660 gcgtcctatt atcttcacaa ctgcacacta tggaaactgg gaaattttaa gccttgctta 720 tgcggctaaa tatggtgcga tttccatagt aggaaaaaag ttaaaaagtg aagttatgta 780 tgaaatttta agccaaagtc gtactcaatt tgacatagaa cttatcgaca aaaaaggcgg 840 tataagacaa atgctaagtg ccctaaaaaa agggcgagct ttgggaattt taactgatca 900 agactgcgca gaaaacgaaa gcgtaagatt aaaatttttt aacaaagaag tgaattatca 960 aatgggagca agccttatcg cacaaagaag caatgctttg atcatccctg tttatgccta 1020 taaagaagct ggtaaatttt gcatagagtt ttttaaagca aaagattctc aaaatgcaag 1080 cttagaagaa ctgacacttt atcaagcaca aagttgcgaa gaaatgatta aaaaaagacc 1140 ttgggaatac ttttttttcc atagacgctt tgcaagttat aatgaggaaa tttacaagga 1200 tgcaaaatga atctaaagca aataagcatt attatcatcg taaaaaatgc tgagcaaact 1260 ttgcttgagt gtttaaattc tttaaaagat tttgatgaaa ttattttact taacaatgaa 1320 agcagtgata ataccctaaa tatagctaat gaatttaaaa aagattttgc taatttatat 1380 atttatcaca atgcttttat aggttttgga gctttaaaaa atcttgcttt aagttatgca 1440 aaaaatgatt ggattttaag cattgatgct gatgaagtgc ttgaaaatga gtgtattaaa 1500 gagtttaaaa atttagagct tcaagaagat aatatcatcg cacttagtcg taaaaatctc 1560 tataaaggcg aatggataaa ggcttgtggt tggtggcctg attatgtttt gagaattttt 1620 aataaaaatt tcactcgttt taataataat ttagtgcatg aaagtcttat tctaccaagc 1680 aatgctaaaa aaattcatct taaaaatgga ttaaggcatt atgcttttag agatatttct 1740 cacttaatta ataaaatgca gtactactca agcctttgga caaaacaaaa tatacacaaa 1800 aaaagtggtg ttttaaaagc aaatttaaga gctttttgga ctttttttag aaattatttt 1860 ttaaaaagtg gctttttata cggctataaa ggctttataa ttagcgtatg caatgcctta 1920 ggggtgtttt ttaaatacat gaaattatat gaacttcaaa gacaaaagcc agaaacttgt 1980 gctttaataa taacaaccta taatcaaaaa gaacgcctta aattagtact tgatagtgtt 2040 aaaaatctag cttttttacc caatgaagtt ttaatcgcag atgatggtag caaagaagat 2100 acagcaaggc ttattgaaga atatcaaaaa gattttcctt gccctttaaa acacatttgg 2160 caagaagatg agggttttcg tgctgcaaaa agtagaaata atgctattaa agcttctaaa 2220 agtgaatata taattttaat tgatggtgat atgattttag aaaaagactt tgtaaaaaat 2280 catttagaat ttgcgaaacg caaagtaatt ttacaaggtt caagagtaat tttaaataaa 2340 aatgaaagcg aagaaatctt aaaaaacaat aattatagtt tagcttttaa taaaaaagat 2400 tttaaaagtt ataaaaattc ctttttagct aaaattatct ataaattttc aaaaatagag 2460 caaaaatttt ttgataccaa ggaaatagta aggggcagta aaacctgtaa tatgagtttt 2520 tttaaagttg actttgataa acttgatggt tttaatgaaa attttattgg ttggggtaga 2580 gaagatagtg aatttgtggc tagattttta tttaataaag gtatttttag acgcttaaaa 2640 tttaaagcta ttgcttatca tatttatcac aaagaaaata gcaaaaaaat gcttgaaagc 2700 aatcatcaaa tttatttaga taccatcaaa aacaaaaaga tttcttggag ataaaacatg 2760 aagaaaatag gtgtagttat accaatctat aatgtagaaa aatatttaag agaatgttta 2820 gatagtgtta tcaatcaaac ttatactaac ttagaaatca tacttgtaaa tgatggtagt 2880 acagatgaaa actcactcaa tattgcaaaa gaatatacct taaaagataa aagaataact 2940 ctttttgata agaaaaatgg gggtttaagt tcagctagaa acgtaggtat agaatacttt 3000 agtggggagt ataaattaaa aaacaaaact caacatataa aagaaaattc tttaatagaa 3060 tttcaattag atggtaataa tccttataat atatataaag catataaaag ctctcaagct 3120 tttaataatg aaaaagattt aaccaatctt acttatccta gtatagatta tattatattc 3180 ttagatagtg ataattattg gaaattaaat tgtatagaag aatgtgttat aagaatgaaa 3240 aatgtggatg tattgtggtt tgaccatgat tgcacctatg aagacaatat aaaaaataag 3300 cacaaaaaaa caaggatgga aatttttgat tttaaaaaag aatgtataat cactccaaaa 3360 gaatatgcaa atcgagcatt aagtgtagga tctagagata tttcttttgg atggaatgga 3420 gtgattgatt ttaatttttt aaagcaaatt aaacttaaat ttataaattt tattatcaat 3480 gaagatatac actttgggat aattttgttt gctagtgcta ataaaattta tgttttatca 3540 caaaagttgt atttgtgccg tttaagagca aacagtatat caaatcatga taagaagatt 3600 acaaaagcaa atgtgtcaga gtattttaaa gatatatatg aaactttcgg ggaaaacgct 3660 aaggaagcaa aaaattattt aaaagcagca agcagggtta taactgcttt aaaattgata 3720 gaatttttta aagatcaaaa aagcgaaaat gcacttgcta taaaagaaac atttttacct 3780 tgctatgcca aaaaagcttt aatgattaaa aaatttaaaa aagatccttt aaatttaaag 3840 gaacaattag ttttaattaa accttttatt caaacaaaac ttccttatga tatttggaaa 3900 ttttggcaaa aaataaaaaa atatttaata ataaaaatat aaaaaattaa ttaattttta 3960 ggtataatca ctataattat aggagaaaat attttacatg ctatttcaat catactttgt 4020 gaaaataatt tgcttattca tcccttttag aaaaattaga cataaaataa aaaaaacatt 4080 tttactaaaa aacatacaac gagataaaat cgattcttat ctaccaaaaa aaactcttat 4140 acaaattaat aaatacaaca atgaagattt aattaaactt aataaagcta ttataggggg 4200 ggggcataaa ggatatttta attatgatga aaaatctaaa gatccaaaat ctcctttgaa 4260 tccttgggct tttatacgag taaaaaatga agctattacc ttaaaagctt ctcttgaaag 4320 catattgcct gctattcaaa gaggtgttat aggatataat gattgtaccg atggaagtga 4380 agaaataatt ctagaatttt gcaaacaata tccttcattt ataccaataa aatatcctta 4440 tgaaattcaa attcaaaacc caaaatcaga agaaaataaa ctctatagct attataatta 4500 tgttgcaagt tttataccaa aagatgagtg gctcataaaa atagatgtgg atcattatta 4560 tgatgcaaaa aaattatata agagttttta tatacctaga aaaaattatc atgtaattag 4620 ttactctagg atagatttta tatttaatga agaaaaattt tatgtttatc ggaataagga 4680 gggggagatt ttaaaagctc ctggagattg tttagcaata caaaacacta acttattttg 4740 gaaagaaata cttattgaag atgatacatt taagtggaat actgcaaaaa ataatataga 4800 gaatgcaaaa tcatatgaaa ttttaaaagt tagaaataga atttatttta ctacagaact 4860 taataattat cattttccat ttataaaaaa ttatagaaaa aatgattata agcagttaaa 4920 ttgggttagc ttagatgatt ttattaaaaa ttataaagaa aaattaaaaa atcaaataga 4980 ttttaaaatg ctagaataca aaacattaaa aaaagtgtac aaaaagctta catcttcagc 5040 aagcgataaa atttaaattg gattttttta aaaaaaatat tgattttaaa acaaagaaca 5100 tttcgcttgc ttgataatga gtatttttca attaataaaa aatactcaat taatttaagc 5160 aaagttaagt taaaattgta attatattgc atcttcttta gaagatatag aacattatct 5220 tgttcttgta tatttgtttt tatattttgc aatgttaatg ttttggttat agagaaatta 5280 tttatttgat aattgtataa atttttactc aagtgaaata tagtatttga aatatttatc 5340 aaagggtagt ataataaaac atcttcagcc atatttattt tagcattttc tagcgatatt 5400 aaaccaacag ccttgagata taattctttt tttatgactt ttgcccacac tgtccaaaat 5460 aaatttttag tttttaatag ttcttttaaa aaatcttttt ttacataaca tttttcttga 5520 aaattcaact ttctttctat tttattgtta ttttccaata caaatgcatt aaaaaataat 5580 aaatctattt cattgttttt taaaattttc atacattctt cacaagcatt aagttctaaa 5640 taatcatcag gatctaaaaa cattatataa ggagagtttg ctacttttac accttcatat 5700 ctagctctta aaagttttaa attttcttca ttatgtatga tttttattct atcatctttt 5760 ttggcatatt ctttaactat atctatactt ttgtcacttc cacaatcatc aactacaatt 5820 atttctatat ttttaaaagt ctgattgata caactttcta ttgcccttgc tatatattgt 5880 tccacattat aagttggcaa gatgattgaa attttaaaca tatttattcc ttattttatt 5940 ataatttaat tataacataa aatctatttt gataaaatcg ttaaaaataa atcttgatgg 6000 aaaataatta tgaaaaaagt tattatttct ggaaatggac caagtttaaa agaaattgat 6060 tattcaaggc taccaaatga ttttgatgta tttagatgca atcaatttta ttttgaagat 6120 aaatactatc ttggtaaaaa attcaaagca gtattttaca atcctggtct tttttttgaa 6180 caatactaca ctttaaaaca tttaatccaa aatcaagaat atgagaccga actaattatg 6240 tgttctaatt acaaccaagc tcatctagaa aatgaaaatt ttgtaaaaac tttttacgat 6300 tattttcctg atgctcattt gggatatgat ttttttaaac aacttaaaga atttaatgct 6360 tattttaaat ttcacgaaat ttatctcaat caaagaatta cctcaggagt ctatatgtgt 6420 gcagtagcta tagccctagg atacaaagaa atttatcttt ctggaattga tttttatcaa 6480 aatgggtcat cttatgcttt tgataccaaa caagaaaatc ttttaaaact ggctcctgat 6540 tttaaaaatg atcgctcaca ctatatcgga catagtaaaa atacagatat aaaagcttta 6600 gaatttctag aaaaaactta caaaataaaa ctatattgct tatgtcctaa cagtctttta 6660 gcaaatttta tagaactagc gccaaattta aattcaaatt ttatcataca agaaaaaaat 6720 aactacacta aagatatact cataccttct agtgaggctt atggaaaatt ttcaaaaaat 6780 attaatttta aaaaaataaa aattaaagaa aatatttatt acaagttgat aaaagatcta 6840 ttaagattac ctagtgatat aaagcattat ttcaaaggaa aataaatgaa agaaataaaa 6900 atacaaaata taatcataag tgaagaaaaa gcacccttag tcgtacctga aataggcatt 6960 aatcataatg gcagtttaga actagctaaa attatggtag atgcagcctt tagcgcaggt 7020 gctaagatta taaagcatca aactcatatt gttgaagatg agatgagtaa ggccgctaaa 7080 aaagtaattc ctggtaatgc aaaaataagc atttatgaga ttatgcaaaa atgtgctttg 7140 gattataaag atgagctagc acttaaagaa tacacagaaa aattag 7186 // |
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