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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   DQ490187; SV 1; linear; genomic RNA; STD; VRL; 605 BP.
XX
AC   DQ490187;
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DT   15-JUL-2006 (Rel. 88, Created)
DT   12-OCT-2006 (Rel. 89, Last updated, Version 2)
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DE   Human rotavirus A strain S2 VP3 gene, partial cds.
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KW   .
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OS   Human rotavirus A
OC   Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Rotavirus; Rotavirus A.
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RN   [1]
RP   1-605
RX   DOI; 10.1128/JCM.02107-05
RX   PUBMED; 17021098.
RA   Lin Y.P., Chang S.Y., Kao C.L., Huang L.M., Chung M.Y., Yang J.Y.,
RA   Chen H.Y., Taniguchi K., Tsai K.S., Lee C.N.;
RT   "Molecular epidemiology of G9 rotaviruses in Taiwan between 2000 and 2002";
RL   J. Clin. Microbiol. 44(10):3686-3694(2006).
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RN   [2]
RP   1-605
RA   Lin Y.P., Chang S.Y., Kao C.L., Huang L.M., Chung M.Y., Yang J.Y.,
RA   Chen H.Y., Taniguchi K., Tsai K.S., Lee C.N.;
RT   ;
RL   Submitted (12-APR-2006) to the EMBL/GenBank/DDBJ databases.
RL   Department of Clinical Laboratory Sciences and Medical Biotechnology,
RL   College of Medicine, National Taiwan University, No. 1, Chang-Te St.,
RL   Taipei 100, Taiwan
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FH   Key             Location/Qualifiers
FH
FT   source          1..605
FT                   /organism="Human rotavirus A"
FT                   /strain="S2"
FT                   /mol_type="genomic RNA"
FT                   /country="Japan"
FT                   /note="subgroup: I; genotype: P[4]G2"
FT                   /db_xref="taxon:10941"
FT   CDS             <1..599
FT                   /codon_start=3
FT                   /product="VP3"
FT                   /db_xref="GOA:A7J392"
FT                   /db_xref="InterPro:IPR009697"
FT                   /db_xref="InterPro:IPR011181"
FT                   /db_xref="UniProtKB/Swiss-Prot:A7J392"
FT                   /protein_id="ABF57039.1"
FT                   /translation="GKASIEGGKYYEHAPIELIYACRSAREFAKLQDDVTVLRYSNEIE
FT                   NYINKVYSITYADDPNYFIGVKFKNIPYKYNVKVPHLTFGVLNISEQMLPDVIVILKKF
FT                   KNELFGMEITTSYTYMLSDEVYVANISGVLSTYFKIYNAFYKEQITFGQSRMFIPHVTL
FT                   SFSNEKTVRIDNTKLYIDSIYLRKIKGDTVFDMTG"
XX
SQ   Sequence 605 BP; 230 A; 73 C; 115 G; 187 T; 0 other;
     caggtaaagc tagtattgaa ggtggtaagt attatgaaca tgctccaata gaattgattt        60
     atgcatgcag atcagcgaga gaattcgcga aactgcaaga tgatgtaacg gtattaagat       120
     attcaaatga gatagaaaac tatatcaaca aagtttatag tataacatac gctgacgatc       180
     ctaattactt tattggagtt aagtttaaaa acattcctta caagtataac gttaaagtac       240
     cacatctcac atttggcgtg ttaaatattt ctgaacagat gttaccagat gtaatagtaa       300
     ttttaaagaa atttaagaat gagctatttg gaatggaaat aacaacgagt tatacatata       360
     tgttatctga tgaggtgtat gtagcaaata taagtggtgt actatcaaca tatttcaaaa       420
     tttacaacgc gttttataaa gaacagatca catttgggca gtcaagaatg tttattcctc       480
     atgtaacgtt gagttttagt aatgagaaaa cggtgagaat agacaataca aaactgtaca       540
     tagattctat ttatttaaga aaaataaaag gtgatacggt gtttgatatg actgggtgag       600
     ctaaa                                                                   605
//
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