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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   DQ336164; SV 1; linear; mRNA; STD; MAM; 1141 BP.
XX
AC   DQ336164;
XX
DT   15-OCT-2006 (Rel. 89, Created)
DT   14-NOV-2006 (Rel. 89, Last updated, Version 2)
XX
DE   Canis familiaris sialyltransferase 7 (ST6GalNac2) mRNA, complete cds.
XX
KW   .
XX
OS   Canis lupus familiaris (dog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis.
XX
RN   [1]
RP   1-1141
RX   DOI; 10.1016/j.ygeno.2006.05.013
RX   PUBMED; 16859891.
RA   Goldstein O., Zangerl B., Pearce-Kelling S., Sidjanin D.J., Kijas J.W.,
RA   Felix J., Acland G.M., Aguirre G.D.;
RT   "Linkage disequilibrium mapping in domestic dog breeds narrows the
RT   progressive rod-cone degeneration interval and identifies ancestral
RT   disease-transmitting chromosome";
RL   Genomics 88(5):541-550(2006).
XX
RN   [2]
RP   1-1141
RA   Goldstein O., Zangerl B., Pearce-Kelling S., Sidjanin D.J., Kijas J.W.,
RA   Felix J., Acland G.M., Aguirre G.D.;
RT   ;
RL   Submitted (19-DEC-2005) to the EMBL/GenBank/DDBJ databases.
RL   James A Baker Institute, Cornell University, Hungerford Hill Rd, Ithaca, NY
RL   14853, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1141
FT                   /organism="Canis lupus familiaris"
FT                   /chromosome="9"
FT                   /mol_type="mRNA"
FT                   /tissue_type="retina"
FT                   /db_xref="taxon:9615"
FT   gene            1..1141
FT                   /gene="ST6GalNac2"
FT   CDS             17..1141
FT                   /codon_start=1
FT                   /gene="ST6GalNac2"
FT                   /product="sialyltransferase 7"
FT                   /note="alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,
FT                   3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2"
FT                   /db_xref="GOA:Q00M94"
FT                   /db_xref="InterPro:IPR012163"
FT                   /db_xref="UniProtKB/TrEMBL:Q00M94"
FT                   /protein_id="ABC74873.1"
FT                   /translation="MGRPRGPLLWLLPLLAAACSGILVALYCSAARPYPGPRAGARNTT
FT                   SSRGFFGHKASNAGMRKNPHCRRPLDLAIQRHPHFRALFDLSTPVLLSGSLFTQELWDS
FT                   LSQHKAPYGWQGLSHQAINSTLSLLNGSESSQLFAASRKPLSSCIRCAVVGNGGILNGS
FT                   RQGLNIDAHDYVFRLNGAVIKGFEKDVGNKTSFYGFTVNTMKNSLISYWNFGFTSVPQG
FT                   PDLRYIFIPSDIRDYVMLRSAILGVPVPEGPDKGDRPQTYFGPEASARKFKLLHPDFIS
FT                   YLRERFLKSKLINTNFGDLYMPSTGALMLLTALHTCDQVSAYGFITSNYWKFSDHYFER
FT                   VKKPLIFYVNHDLSLEASLWRDLHKAGILQLYQR"
FT   variation       434
FT                   /gene="ST6GalNac2"
FT                   /replace="a"
XX
SQ   Sequence 1141 BP; 236 A; 361 C; 305 G; 239 T; 0 other;
     gcggggccgg ggccgcatgg ggcgcccgcg cggcccgctc ctgtggctgc tgccgctgct        60
     cgcggctgcc tgctcgggga tcctcgtcgc cctgtactgc tcggcagcga ggccgtaccc       120
     ggggccccgg gccggagcca ggaacaccac atcgtctcgg ggattctttg gacacaaggc       180
     atcaaatgct ggaatgagaa agaacccgca ctgccgacgc ccacttgacc tggccatcca       240
     gaggcacccc cacttccgtg ccctgttcga tctctccact ccagtgctgc tatcggggag       300
     cctcttcact caggagctct gggacagcct gagccagcac aaagccccct acggctggca       360
     gggcctgtcc caccaagcca ttaactccac cctgagcctc ctgaacggct ccgagagctc       420
     ccagctgttc gccgcctcca ggaagccgct ttcaagctgc attcggtgcg cggtggtggg       480
     gaacgggggc attctgaacg gttcccgcca gggtctgaac atcgacgccc atgactacgt       540
     gttcagactc aacggcgcgg tgatcaaagg cttcgagaag gatgtgggca acaagacctc       600
     cttttacggt ttcactgtga acacgatgaa aaactctctc atctcctact ggaactttgg       660
     cttcacctcc gtgccgcaag gaccggacct gcgctacatc ttcatcccct cggacatccg       720
     cgattatgtg atgctgagat cggccattct gggcgtgcct gtccccgagg gccctgataa       780
     aggcgacagg cctcagacct atttcggacc agaagcctct gccaggaaat tcaagctact       840
     acatccggac ttcatcagct acctgaggga gaggtttttg aaatcaaagt tgattaacac       900
     aaattttgga gacctatata tgcctagtac tggggctctc atgctgctga cggctttgca       960
     cacctgtgac caggttagtg cctatggatt catcacaagc aactactgga aattttctga      1020
     ccactatttc gagcgagtta agaagccact gatattctat gtcaaccacg acctgtccct      1080
     ggaagcctcc ctgtggaggg acctgcacaa ggccggcatc cttcaactgt accagcgctg      1140
     a                                                                      1141
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