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EBI DbfetchID DQ200356; SV 1; linear; genomic DNA; STD; PRO; 5139 BP. XX AC DQ200356; XX DT 02-OCT-2005 (Rel. 85, Created) DT 02-OCT-2005 (Rel. 85, Last updated, Version 1) XX DE Pseudomonas stutzeri OrfX gene, partial cds; nap operon, complete sequence; DE and Dcd (dcd) gene, partial cds. XX KW . XX OS Pseudomonas stutzeri OC Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; OC Pseudomonadaceae; Pseudomonas. XX RN [1] RP 1-5139 RA Rediers H., Vanderleyden J., De Mot R.; RT "Nitrate reduction in Pseudomonas stutzeri A15 and its contribution to rice RT and wheat rhizosphere fitness"; RL Unpublished. XX RN [2] RP 1-5139 RA Rediers H., Vanderleyden J., De Mot R.; RT ; RL Submitted (09-SEP-2005) to the EMBL/GenBank/DDBJ databases. RL De Nayer Institute, Jan De Nayerlaan 5, Sint Katelijne Waver B-2860, RL Belgium XX DR StrainInfo; 67003; A15. XX FH Key Location/Qualifiers FH FT source 1..5139 FT /organism="Pseudomonas stutzeri" FT /strain="A15" FT /mol_type="genomic DNA" FT /db_xref="taxon:316" FT CDS complement(<1..482) FT /codon_start=1 FT /transl_table=11 FT /product="putative permease" FT /note="member of the major facilitator family; OrfX" FT /db_xref="GOA:Q3HS08" FT /db_xref="InterPro:IPR005829" FT /db_xref="InterPro:IPR011701" FT /db_xref="InterPro:IPR016196" FT /db_xref="UniProtKB/TrEMBL:Q3HS08" FT /protein_id="ABA42170.1" FT /translation="MIETSHLKRGTAAYRRATLALFCAGFATFALLYCIQPLLPLLAAH FT FAVSAANSSLALSLTTLSLALCLLISGALAESWGRKPVMAAALGLASLLGLACVLVESW FT HLLLLLRTLLGLALSSLPALAMAYVGEEFDPDSLPAAMGLYIGGTALGGMLGRLLSG" FT operon 666..4814 FT /operon="nap" FT gene 666..845 FT /operon="nap" FT /gene="napE" FT CDS 666..845 FT /codon_start=1 FT /transl_table=11 FT /operon="nap" FT /gene="napE" FT /product="NapE" FT /note="transmembrane protein" FT /db_xref="InterPro:IPR004448" FT /db_xref="InterPro:IPR010649" FT /db_xref="UniProtKB/TrEMBL:Q3HS07" FT /protein_id="ABA42171.1" FT /translation="MTVTPNDTRPSVASTKRDETRLFVFLIVFLFPILSVALVSGYGFI FT VWIVQMIFGPPGPA" FT gene 905..1159 FT /operon="nap" FT /gene="napD" FT CDS 905..1159 FT /codon_start=1 FT /transl_table=11 FT /operon="nap" FT /gene="napD" FT /product="NapD" FT /note="NapA maturation protein" FT /db_xref="InterPro:IPR005623" FT /db_xref="UniProtKB/TrEMBL:Q3HS06" FT /protein_id="ABA42172.1" FT /translation="MGHPLHIASLLVHCRPEWLAALKTNLQLLPGLELHQESPSGKLVV FT VLEAEHESRILAAIDHIQQLPGVLNAALVYHEELLEGDA" FT gene 1159..3663 FT /operon="nap" FT /gene="napA" FT CDS 1159..3663 FT /codon_start=1 FT /transl_table=11 FT /operon="nap" FT /gene="napA" FT /product="NapA" FT /note="periplasmic nitrate reductase; periplasmic nitrate FT reductase catalytic subunit" FT /db_xref="GOA:Q3HS05" FT /db_xref="InterPro:IPR006311" FT /db_xref="InterPro:IPR006655" FT /db_xref="InterPro:IPR006656" FT /db_xref="InterPro:IPR006657" FT /db_xref="InterPro:IPR006963" FT /db_xref="InterPro:IPR009010" FT /db_xref="InterPro:IPR010051" FT /db_xref="InterPro:IPR017909" FT /db_xref="UniProtKB/Swiss-Prot:Q3HS05" FT /protein_id="ABA42173.1" FT /translation="MSLTRRQFAKANAAAIAATVAGMPIASTASNLVTEADATNLKWDK FT APCRFCGTGCGVMVATRENRVVATHGDVKADVNRGINCVKGYFLSKIMYGTDRLTQPLL FT RMKDGKFDKQGEFQPVTWDQAFDIMEEKYKAALKAGGPEAIGMFGSGQWTIWEGYAANK FT LMKAGFRSNNIDPNARHCMASAAFGFMRTFGMDEPMGCYEDIEAADAFVLWGSNMAEMH FT PVLWTRLTDRRLSAPHVKVAVMSTFEHRSFELADIPMIFNPQTDLVILNYIANHIIQSG FT AVNKEFIDKHTRFAKGATNIGYGLRPTDPLELKAENAAVANTWTDIGYEDYVEFLKPYT FT LEHAAKESGVPAERLKALAELYADPKVKVMSFWTMGFNQHTRGVWANNMIYNIHLLTGK FT ISEPGNSPFSLTGQPSACGTAREVGTFSHRLPADMAVTNPKHRAITEKIWKLPEGTIQE FT KPGFHAVDQSRKLKDGVLKVYWTQVTNNMQAGPNVMQEILPGWRNPETFVIVSDVYPTV FT SAQAADLILPSAMWVEKEGAYGNAERRTQFWHQLVTAPGEARSDLWQLVEFSKRFRVDE FT VWPAELLSKAPEFKDKTLFDVLFKNGQVDRFSNDEIAEGYANYEAEAFGFYLQKGLFEE FT YAEFGRGHAHDLAAFDVYHRERGLRWPVVDEKETQWRYREGYDPYVEAGSGVQFYGNAD FT KKAIIFALPYEVPAEVPDEEYPFWLSTGRVLEHWHTGSMTQRVDELHKAVPDALVYMHP FT EDARKLNVRRGSVVKIVSRRGEMQGRVETRGRNKPPMGLVYVPFFDANKLINKVTLDAT FT DPISKQTDFKKCAVKIEVVSIA" FT gene 3675..4163 FT /operon="nap" FT /gene="napB" FT CDS 3675..4163 FT /codon_start=1 FT /transl_table=11 FT /operon="nap" FT /gene="napB" FT /product="NapB" FT /note="periplasmic nitrate reductase" FT /db_xref="InterPro:IPR005591" FT /db_xref="InterPro:IPR011031" FT /db_xref="UniProtKB/TrEMBL:Q3HS04" FT /protein_id="ABA42174.1" FT /translation="MKFCLLPLTLLAVFGLAVAAETNYPLDAPAPDGRRPGGTITQEFT FT PPPLHDEENKDVRRERNYPEQPPTIPHSIRGYHVDKNAHKCLSCHSRANSARAQAPMIS FT ITHYTDRDQQTLAAVAPRRYFCTQCHVPQQDVKPLVENRFKNIDELLYRETSPSTGGN" FT gene 4174..4770 FT /operon="nap" FT /gene="napC" FT CDS 4174..4770 FT /codon_start=1 FT /transl_table=11 FT /operon="nap" FT /gene="napC" FT /product="NapC" FT /note="periplasmic nitrate reductase cytochrome c-type FT protein; cytochrome c-type protein NapC" FT /db_xref="GOA:Q3HS03" FT /db_xref="InterPro:IPR005126" FT /db_xref="InterPro:IPR011031" FT /db_xref="InterPro:IPR011885" FT /db_xref="UniProtKB/TrEMBL:Q3HS03" FT /protein_id="ABA42175.1" FT /translation="MKSIKSFFKRYWAVLRRPSVHYSLGALTLGGFIAGIIFWGGFNTA FT LEATNTEAFCISCHEMEDNVFMEIKDTIHYSNRSGVRATCPDCHVPHQWTDKIARKMQA FT SKEVWGKIFGTISTREKFLEKRRELAEHEWARLKANDSLECRNCHNFDYMDFTRQGKRA FT AKFHSTALASGEATCIDCHKGIAHKLPDMRGVPGW" FT stem_loop 4787..4814 FT /operon="nap" FT gene complement(4830..>5139) FT /gene="dcd" FT CDS complement(4830..>5139) FT /codon_start=2 FT /transl_table=11 FT /gene="dcd" FT /product="Dcd" FT /note="deoxycytidine triphosphate deaminase" FT /db_xref="UniProtKB/TrEMBL:Q3HS02" FT /protein_id="ABA42176.1" FT /translation="NSFSLARTVEYFRIPRNVLTICLGKSTYARCGIIVNVTPLEPEWE FT GHVTLEFSNTTTLPAKIYANEGVAQMLFLESDEECEVSYRDRGGKYQGQRGVTLPKA" XX SQ Sequence 5139 BP; 1085 A; 1705 C; 1541 G; 808 T; 0 other; ccggacagca aacgcccgag catcccaccc agagcagtgc cgccgatgta cagccccatc 60 gccgccggca gcgagtccgg gtcgaactct tcaccgacat aggccatcgc cagcgccggc 120 aggctactca gcgccaggcc caacagcgtg cgcaatagca gcagcagatg ccaggactcc 180 accagcacgc atgccaggcc gagcaggctc gccaacccga gcgctgcagc catgaccggc 240 ttgcgccccc agctttcggc cagcgcgccg gagatcagta ggcagagtgc gagcgacagc 300 gtcgtcagcg acagcgccag gctgctattg gccgcggaaa cggcgaaatg cgcggccagc 360 aacggcagca acggctggat gcaatacaac agcgcgaagg tggcgaagcc ggcacagaac 420 agcgccagcg tggcgcgtcg ataggcggca gtaccgcgtt tgaggtggga ggtttcgatc 480 atcgtcaacg cctgcagcag gctgcaaaaa aagccgcgca ggctagcacg gttgccccgt 540 cgccgcgcgc cgatcgagtg agtcgccagt caatgggacc gcgccgactg caaaactatc 600 gaaacgaaca ttgccctatg ttggtcagtg actagactcc cctatatgcc agtcggagta 660 gaacaatgac agtaacgccg aatgacaccc gcccctctgt cgcctcgacc aagcgggacg 720 agacccgcct gttcgtcttc ctgatcgtgt ttctgtttcc catcctgagc gtcgcgctgg 780 tcagcggcta cggtttcatc gtctggatcg tgcagatgat cttcgggccg ccgggcccag 840 cctagctccc gcaccattga ccggggcgct cacgccctgc caccaagcca gacggaaacg 900 cgtgatggga caccctttgc atatcgccag cctcctggtg cactgccgcc ccgagtggct 960 ggccgcgctg aaaaccaacc tccagttgct acccggtctc gagctgcatc aggaaagccc 1020 cagcggcaag ctggtggtgg tgctcgaggc cgagcacgag tcgcgcatcc tcgctgcgat 1080 cgaccacatc cagcagctgc ctggcgtcct taacgccgcc ctggtctacc acgaagaact 1140 cctcgaagga gacgcctgat gagccttacc cgacgtcaat tcgccaaggc caatgccgcc 1200 gccatcgcgg cgaccgtggc cggcatgccc atcgcttcga ccgcgagcaa tctggtcacc 1260 gaagcggacg ccactaacct caagtgggac aaggccccct gccgtttctg cggcacgggc 1320 tgcggcgtga tggtggcgac gcgagagaat cgggtggtcg ccacgcacgg cgacgtcaag 1380 gcggacgtca accgcggcat caactgcgtc aagggttact tcctgtcgaa gatcatgtac 1440 ggcaccgatc gcctcaccca gcccctgctg cgcatgaaag acggcaagtt cgacaagcag 1500 ggcgagttcc agccggtcac ctgggatcag gccttcgaca tcatggagga aaagtacaag 1560 gcggcactca aggctggcgg cccggaagcc atcggcatgt tcggttcggg gcagtggacg 1620 atctgggaag gttacgccgc gaacaagctg atgaaggccg gctttcgttc caacaacatc 1680 gaccccaacg cgcgccactg catggcctcg gcagcattcg gcttcatgcg caccttcggc 1740 atggacgagc cgatgggctg ttacgaagac atcgaggctg ccgacgcttt cgtgctgtgg 1800 ggctcgaaca tggccgagat gcacccggtg ctgtggacgc gcctcaccga ccgcagactg 1860 agcgcaccac acgtcaaggt cgcggtgatg tccaccttcg agcatcgcag cttcgagctg 1920 gccgacatcc cgatgatctt caacccgcag accgacctgg tgatcctcaa ctacatcgcc 1980 aaccacatca tccagagcgg cgcggtgaac aaggagttca tcgacaagca cacccgattc 2040 gccaagggtg ccacgaacat cggctacggc ctgcgtccga ccgatccact ggagctgaag 2100 gccgagaatg ccgcggtggc caacacctgg accgacattg gctacgagga ctacgtcgag 2160 ttcctcaaac cctacaccct ggaacacgcc gccaaggaat caggtgtacc ggccgagcgc 2220 ctgaaggccc tggccgagct gtacgccgac cccaaggtca aggtgatgtc cttctggacc 2280 atgggcttca accagcacac ccgcggtgtc tgggcgaaca acatgatcta caacatccat 2340 ctgctcaccg gaaagatcag cgagccgggc aacagcccgt tctcgctcac cggccagccc 2400 tcggcctgcg gcaccgcgcg cgaggtcggg accttctccc accgcctgcc agcggacatg 2460 gccgtcacca accccaagca tcgcgccatt accgaaaaga tctggaagct gcccgaaggc 2520 accatccagg aaaagcccgg gttccacgcc gtcgaccaga gccgcaagct caaggacggc 2580 gtgctgaagg tgtactggac acaggtgacc aataacatgc aggccggtcc caacgtgatg 2640 caggagatcc tgccaggctg gcgcaacccg gaaaccttcg tgatcgtgtc ggacgtctac 2700 cccacggtct ccgcccaggc cgccgacctc atcctgccca gcgccatgtg ggtggagaag 2760 gaaggcgctt acggcaatgc cgagcgccgc acccagttct ggcaccagct ggtcaccgca 2820 cccggcgagg cgcgctcgga tctgtggcaa ctggtggagt tttccaagcg cttccgcgtc 2880 gatgaggtat ggccggcgga gctgctgagc aaggcgccgg agttcaagga caagacgctg 2940 ttcgacgtgc tgttcaagaa tggccaggtc gatcgtttct ccaacgacga aatcgccgag 3000 ggttatgcca actatgaggc ggaggcattc ggcttctatc tgcagaaggg cttgttcgag 3060 gagtacgccg agttcggccg cggccacgcc cacgatctgg cggcgttcga cgtctaccat 3120 cgtgaacgcg gcctgcgctg gccggtggtc gacgagaagg agacccagtg gcgctaccgc 3180 gagggttacg acccctacgt cgaagccggc agcggtgtgc agttctatgg caatgcggac 3240 aagaaggcga tcatcttcgc gcttccctat gaggtgcccg ccgaggtgcc ggatgaagag 3300 tatccgttct ggctgagcac cggtcgggtg ctcgagcact ggcacaccgg cagcatgacg 3360 cagcgtgtcg acgaactgca caaggcggta cctgacgccc tcgtctacat gcaccccgag 3420 gatgcgcgca agctcaacgt gcgccgcggc agtgtggtca agatcgtcag ccgacgcggc 3480 gagatgcagg gccgggtcga aacgcgcggg cgcaacaagc cgccgatggg gctggtgtac 3540 gtcccgttct tcgatgccaa caagctgatc aacaaggtca cgctcgatgc caccgacccg 3600 atctccaaac agaccgattt caagaaatgc gccgtgaaga tcgaagtggt cagcatcgcc 3660 tgaggagagc cgccatgaaa ttctgcctac tgccgctgac cctgctcgcg gtgttcggtc 3720 tggctgttgc cgccgaaacc aactaccccc tcgacgcccc cgcgccggac ggccgacgcc 3780 cgggcggcac catcacccag gaattcaccc cgccgccgtt gcacgacgag gaaaacaagg 3840 atgtccggcg cgaacgcaac tacccggagc aaccgccgac catccctcac agcatccgcg 3900 gctatcacgt cgacaagaac gcccacaaat gcctgagctg ccatagccga gccaacagcg 3960 cccgcgccca ggcaccgatg atcagcatca cccactacac cgaccgcgat cagcagaccc 4020 tcgccgcggt ggcgccacga cggtacttct gcacgcagtg ccacgtgccg cagcaggatg 4080 tgaagccgct ggtggaaaac cgcttcaaga acatcgacga gctgctgtac cgggaaacct 4140 caccatccac cggcggaaac tgagggggcc tggatgaagt cgatcaagtc gtttttcaaa 4200 cgctactggg ccgtcctgcg gcgaccgagc gtccactaca gcctcggcgc gctgacgctt 4260 ggcgggttca tcgccgggat catcttctgg ggcggtttca acacggcgct ggaggccacc 4320 aacaccgagg cgttctgcat ctcctgccac gagatggaag acaacgtgtt catggagatc 4380 aaggacacca tccactacag caaccgctcc ggcgtgcgtg cgacctgccc ggattgccat 4440 gtgccacacc agtggaccga caagatcgcg cgcaagatgc aggcctccaa ggaagtctgg 4500 ggcaagatct tcggcaccat cagcacccgc gagaaattcc tcgagaaacg ccgcgagctg 4560 gccgagcacg aatgggcacg gctcaaggcg aacgactcgc tggagtgccg caactgccac 4620 aatttcgact atatggactt tacccggcag ggcaagcgcg cagcaaagtt ccactccacc 4680 gccttggcca gcggcgaggc gacctgcatc gactgccaca aaggcatcgc ccacaaactg 4740 ccggacatgc gaggggtgcc gggctggtaa ccggcagatc ggcgcaaaaa aacctggctc 4800 aggccaggtt ttttcatatc cggagaagct taggccttcg gcagcgtcac gccgcgctgg 4860 ccctggtact tgccgccgcg gtcgcggtag gacacctcgc actcctcatc cgattcgagg 4920 aacagcatct gcgccacacc ctcgttggcg tagatcttcg ccggcagcgt ggtggtgttg 4980 gagaactcca gggtcacatg cccttcccac tccggctcca gcggcgtcac gttgacgatg 5040 atgccgcagc gcgcataggt gctcttgccc aggcagatgg tcagcacgtt gcgtggaatg 5100 cggaagtact cgacggtgcg ggccaacgag aaggagttc 5139 // |
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