EBI Dbfetch

ID   DQ143940; SV 1; linear; genomic DNA; STD; PRO; 1625 BP.
XX
AC   DQ143940;
XX
DT   01-OCT-2005 (Rel. 85, Created)
DT   08-DEC-2005 (Rel. 86, Last updated, Version 3)
XX
DE   Campylobacter jejuni subsp. jejuni 81-176 aspartyl/glutamyl-tRNA
DE   amidotransferase, B subunit (gatB) gene, partial cds; S-ribosylhomocysteine
DE   lyase (luxS) gene, complete cds; and putative oxidoreductase gene, partial
DE   cds.
XX
KW   .
XX
OS   Campylobacter jejuni subsp. jejuni 81-176
OC   Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
OC   Campylobacteraceae; Campylobacter.
XX
RN   [1]
RP   1-1625
RA   Chen C.-Y., Irwin P.L.;
RT   "Onset time as an objective parameter for evaluating AI-2 activity in the
RT   Vibrio harveyi bioluminescence assay";
RL   Unpublished.
XX
RN   [2]
RP   1-1625
RA   Chen C.-Y., Nace G.W.Jr.;
RT   ;
RL   Submitted (25-JUL-2005) to the EMBL/GenBank/DDBJ databases.
RL   U.S. Department of Agriculture, Agricultural Research Service, Eastern
RL   Regional Research Center, 600 E. Mermaid Ln., Wyndmoor, PA 19038, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1625
FT                   /organism="Campylobacter jejuni subsp. jejuni 81-176"
FT                   /sub_species="jejuni 81-176"
FT                   /strain="81-176"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:354242"
FT   gene            complement(<1..558)
FT                   /gene="gatB"
FT   CDS             complement(<1..558)
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /gene="gatB"
FT                   /product="aspartyl/glutamyl-tRNA amidotransferase, B
FT                   subunit"
FT                   /note="similar to Campylobacter jejuni RM1221 YP_179318.1"
FT                   /db_xref="GOA:Q3I355"
FT                   /db_xref="InterPro:IPR017959"
FT                   /db_xref="UniProtKB/TrEMBL:Q3I355"
FT                   /protein_id="ABA26839.1"
FT                   /translation="MFEVVIGLEVHTQLNTKTKIFCSCATSFGEAPNTNVCPTCLALPG
FT                   ALPVLNEEAVKKAIAFGKAVNAAINKKSVFNRKNYFYPDLPKAYQISQFDIPIVEKGEL
FT                   FINVKGENKRIGITRAHLEEDAGKNIHENNFSKVDLNRAGTPLLEIVSEPELRSSDEAV
FT                   AYLKKLHSIIRFLDISDANMQEG"
FT   gene            673..1167
FT                   /gene="luxS"
FT   CDS             673..1167
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /gene="luxS"
FT                   /product="S-ribosylhomocysteine lyase"
FT                   /note="autoinducer-2 production protein"
FT                   /db_xref="GOA:Q3I354"
FT                   /db_xref="InterPro:IPR003815"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q3I354"
FT                   /protein_id="ABA26840.1"
FT                   /translation="MPLLDSFKVNHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCVPNK
FT                   DIMSEKGTHTLEHLFAGFMRDHLNSDSVEIIDISPMGCRTGFYMSLIGTPDEKSVAKAW
FT                   EEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELKLEN
FT                   A"
FT   CDS             1479..>1625
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /product="putative oxidoreductase"
FT                   /note="similar to Campylobacter jejuni RM1221 YP_179320.1"
FT                   /db_xref="UniProtKB/TrEMBL:Q3I353"
FT                   /protein_id="ABA26841.1"
FT                   /translation="MNLPILDLQAYEKDKSTFLKNLREIASKIGFFYLINTSIDKNLNE
FT                   KLFK"
XX
SQ   Sequence 1625 BP; 574 A; 233 C; 246 G; 572 T; 0 other;
     tccttcttgc atatttgcat ctgaaatgtc taaaaagcgt ataatagaat gaagtttttt        60
     aagataagct actgcctcat cactacttct aagctcaggt tcactgacaa tctcaagcaa       120
     aggagttcct gcacgattta agtccacttt agaaaaatta ttttcgtgga tatttttacc       180
     tgcatcttct tctaagtgtg ctcttgtaat acctatgcgt ttattttcac cctttacatt       240
     gataaaaagc tcaccctttt ctactatagg gatatcaaat tgtgaaattt gataagcctt       300
     aggtaaatct ggataaaaat aattcttacg gttaaaaaca ctttttttat taattgctgc       360
     attgacagct tttccaaaag ctatagcttt ttttacagcc tcttcattta aaacaggcaa       420
     agctcctggt aaggccaaac aagtgggaca aacattagta tttggagctt ctccaaaaga       480
     agttgcgcat gagcaaaaga tttttgtttt tgtatttaac tgagtatgaa cttcaagacc       540
     tataactact tcgaacataa aatttccttg aatttttaaa tgttttattt tatctttttt       600
     tcttttagaa aggctttaaa tattaacttt aaatgctata attcttagac aatttatatt       660
     taaggagtta aaatgccatt attagatagt tttaaagtta atcataccaa aatgccagcg       720
     cccgctgtgc gtttagctaa agttatgaaa acacctaagg gtgatgatat tagtgtattt       780
     gatttgcgtt tttgcgtacc aaataaagac attatgagcg aaaaaggtac acatacctta       840
     gaacatttat ttgcaggatt tatgagagat catcttaatt cagattcggt tgaaatcatt       900
     gatatttcac ctatgggctg tcgtacgggt ttttatatga gtttaattgg aacaccagat       960
     gaaaaaagtg ttgcaaaagc ttgggaagaa gctatgaaag atgttttaag cgtaagcgat      1020
     caaagcaaaa ttcctgaact taatatctat caatgcggaa cttgcgcaat gcattcttta      1080
     gatgaagcca aacaaattgc ccaaaaggtt ttaaatctag gtattagcat aatgaataac      1140
     aaagaattaa aactcgagaa tgcttaaaaa gaatctttat tttttagacg attaagcttt      1200
     aattaatata tttttatata tgattttgaa attttattat tttaaaagga gaaaaaatga      1260
     aactgatgtg cgagatgtgt agtatctagt gcgtcctttg gcttaacatt atgtttccca      1320
     aggtccaaaa agtggataag gagatataat gtgtaagaaa gtcaaaaaag tttatttttt      1380
     caaaatactc atttaaaatc ttaacttaca aaaatttctc taaataaaat ttaattcaaa      1440
     atatcttctt atccttaatt ttaatttaag gagcaaaaat gaacttacct atacttgatt      1500
     tacaagctta tgaaaaagat aaaagcactt ttcttaaaaa tttaagagaa attgcttcta      1560
     aaataggttt tttttatctt atcaatacca gtatagataa aaatttaaac gagaaattat      1620
     tcaaa                                                                  1625
//