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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   DQ104219; SV 1; linear; mRNA; STD; VRT; 1398 BP.
XX
AC   DQ104219;
XX
DT   27-AUG-2005 (Rel. 85, Created)
DT   21-OCT-2008 (Rel. 97, Last updated, Version 3)
XX
DE   Danio rerio beta-1,4-galactosyltransferase 5 mRNA, complete cds.
XX
KW   .
XX
OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
XX
RN   [1]
RP   1-1398
RX   DOI; 10.1242/dev.02378
RX   PUBMED; 16672343.
RA   Machingo Q.J., Fritz A., Shur B.D.;
RT   "A beta1,4-galactosyltransferase is required for Bmp2-dependent patterning
RT   of the dorsoventral axis during zebrafish embryogenesis";
RL   Development 133(11):2233-2241(2006).
XX
RN   [2]
RP   1-1398
RA   Machingo Q.J., Fritz A., Shur B.D.;
RT   ;
RL   Submitted (24-JUN-2005) to the EMBL/GenBank/DDBJ databases.
RL   Cell Biology, Emory University, 615 Michael Street, Atlanta, GA 30322, USA
XX
DR   Ensembl-Gn; ENSDARG00000063570; Danio_rerio.
DR   Ensembl-Tr; ENSDART00000055099; Danio_rerio.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1398
FT                   /organism="Danio rerio"
FT                   /mol_type="mRNA"
FT                   /db_xref="taxon:7955"
FT   CDS             249..1394
FT                   /codon_start=1
FT                   /product="beta-1,4-galactosyltransferase 5"
FT                   /note="drB4GalT5"
FT                   /db_xref="GOA:Q3YL68"
FT                   /db_xref="InterPro:IPR003859"
FT                   /db_xref="UniProtKB/TrEMBL:Q3YL68"
FT                   /db_xref="ZFIN:ZDB-GENE-060628-3"
FT                   /protein_id="AAZ80090.1"
FT                   /translation="MPTHLRFRRRSFLGLLFLFSLSTSALYFIYSAPGIVNEYLFMVQA
FT                   RGIQIRENVRNMGAQVLEQVVRSAYSINGTEYTYEFNFSETDASPTPFLPEGFTYKPEQ
FT                   VCPEKLPSMKGRLKVNMSEIALDEVEKLLKLNDPGLSVGGHWKPHDCRPRWKVAILVPF
FT                   RNRHEHLPILFRHLIPALQRQRLQFGFYVIEQAGNEPFNRAMLFNVGFKEAMKDLNWDC
FT                   VIFHDVDHILENDRNYYGCGEMPRHFAVKLNKYSYMLPYEEFFGGVSGLTVKQFKRING
FT                   FPNAFWGWGGEDDDLWNRVQFAGYKVSRPHGELGRYMSIPHHHRGEVQFLGRYKLLRRS
FT                   KERQSLDGLNNLNYSPLVSRRSLYTNVSVTLSRDLAPVADY"
XX
SQ   Sequence 1398 BP; 349 A; 339 C; 370 G; 340 T; 0 other;
     attatgagta tttacatttc cagcagtgca ttagcagagc gcaggagggt gtgtgtgtgt        60
     gtgtgtatgc gagggtgtgt gtgcgcgcgc gctctctctg cctgaccaat acatacagac       120
     acacgggatg gagaagatga tgaggctcta ctaagacaac caaacctttt aaatttcggg       180
     atcatatctg gactctctat taacgggaca cgcatacaga agaatacctg cgtctctctg       240
     tctatataat gccgacacat ctgagatttc ggagaaggtc attcctcgga ctgttatttc       300
     tcttctcgct ctccacatct gcactgtact tcatctactc ggctcctgga atagttaatg       360
     agtacctgtt catggttcag gcccgtggaa tccagatccg tgaaaatgtg aggaatatgg       420
     gggctcaggt tctggagcag gtggtccgca gtgcttacag catcaacggc acagagtaca       480
     cctatgagtt taacttcagc gagacagacg cgtcccccac tccttttctc ccggagggct       540
     tcacgtataa gcctgagcag gtctgcccag agaagctgcc ctccatgaag ggccggctga       600
     aggtgaacat gagtgagatc gctctagacg aggtggagaa actgctgaag ctaaatgatc       660
     cgggtctgtc agtcggaggc cactggaaac cccatgactg tcgcccacgc tggaaggtgg       720
     ccattttggt tcctttccga aatcgccatg agcaccttcc aatactcttc cggcatctga       780
     tcccagcgct gcagagacag agactgcagt tcggcttcta cgtcattgaa caggcaggaa       840
     atgaaccctt caaccgtgcc atgctgttta atgtcggatt caaagaggcc atgaaggact       900
     tgaactggga ttgcgtgata ttccacgatg tggaccacat tctggaaaat gaccgcaact       960
     attacggatg tggtgaaatg cccagacatt ttgcggtcaa actcaacaag tactcataca      1020
     tgcttccata tgaggagttt tttggtggag tgagcggact caccgtcaag caattcaaaa      1080
     ggataaatgg ctttcccaat gcattctggg gctggggagg agaagacgat gacctttgga      1140
     acagagttca atttgctgga tacaaggtga gccgtcctca tggagagctg ggccgctaca      1200
     tgtccatccc gcaccaccac cgaggagaag tgcagtttct gggcagatac aagttgctcc      1260
     gtaggtcgaa ggagaggcag agtctggacg gcctgaataa cttgaattac tcccctctag      1320
     tgtcccggag gagtctttac accaacgtgt cagtgacgct cagtcgagat ctggctcctg      1380
     tggccgatta ctgacaaa                                                    1398
//
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