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EBI DbfetchID D84188; SV 2; linear; genomic DNA; STD; PRO; 3334 BP. XX AC D84188; XX DT 23-JUL-1997 (Rel. 52, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Clostridium thermocellum DNA for xylanase, complete cds. XX KW xylanase; xynC. XX OS Clostridium thermocellum OC Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; OC Clostridium. XX RN [1] RP 1-3334 RA Sakka K.; RT ; RL Submitted (21-MAR-1996) to the EMBL/GenBank/DDBJ databases. RL Kazuo Sakka, Mie University, Faculty of Bioresources; 1515 Kamihamacho, RL Tsu, Mie 514-8507, Japan (E-mail:sakka@bio.mie-u.ac.jp, Tel:81-59-231-9621, RL Fax:81-59-231-9684) XX RN [2] RX PUBMED; 9209040. RA Hayashi H., Takagi K., Fukumura M., Kimura T., Karita S., Sakka K., RA Ohmiya K.; RT "Sequence of xynC and properties of XynC, a major component of the RT Clostridium thermocellum cellulosome"; RL J. Bacteriol. 179(13):4246-4253(1997). XX CC Sequence updated (15-May-1999) XX FH Key Location/Qualifiers FH FT source 1..3334 FT /organism="Clostridium thermocellum" FT /strain="F1" FT /mol_type="genomic DNA" FT /db_xref="taxon:1515" FT -35_signal 523..528 FT -10_signal 548..553 FT RBS 587..591 FT /note="SD sequence" FT CDS 599..2458 FT /codon_start=1 FT /transl_table=11 FT /gene="xynC" FT /product="xylanase" FT /db_xref="GOA:O32374" FT /db_xref="HSSP:1DAV" FT /db_xref="InterPro:IPR013781" FT /db_xref="UniProtKB/TrEMBL:O32374" FT /protein_id="BAA21516.2" FT /translation="MLKKKLLTLLTVFALLTVGICGSFLPLPKASAAALIYDDFETGLN FT GWGPRGPETVELTTEEAYSGRYSLKVSGRTSTWNGPMVDKTDVLTLGESYKLGVYVKFV FT GDSYSNEQRFSLQLQYNDGAGDVYQNIKTATVYKGTWTLLEGQLTVPSHAKDVKIYVET FT EFKNSPSPQDLMDFYIDDFTATPANLPEIEKDIPSLKDVFAGYFKVGGAATVAELAPKP FT AKELFLKHYNSLTFGNELKPESVLDYDATIAYMEANGGDQVNPQITLRAARPLLEFAKE FT HNIPVRGHTLVWHSQTPDWFFRENYSQDENAPWASKEVMLQRLENYIKNLMEALATEYP FT TVKFYAWDVVNEAVDPNTSDGMRTPGSNNKNPGSSLWMQTVGRDFIVKAFEYARKYAPA FT DCKLFYNDYNEYEDRKCDFIIEILTELKAKGLVDGMGMQSHWVMDYPSISMFEKSIRRY FT AALGLEIQLTELDIRNPDNSQWALERQANRYKELVTKLVDLKKEGINITALVFWGITDA FT TSWLGGYPLLFDAEYKAKPAFYAIVNSVPPLPTEPPVQVIPGDVNGDGRVNSSDLTLMK FT RYLLKSISDFPTPEGKIAADLNEDGKVNSTDLLALKKLVLREL" FT sig_peptide 599..694 FT mat_peptide 695..2455 FT /note="Similar to thermostabilizing domain" FT stem_loop 2522..2556 XX SQ Sequence 3334 BP; 1079 A; 567 C; 758 G; 930 T; 0 other; aattcaatga gaccgcgcat atagacatcg tggccgtagt agaggatacg cacctgcctt 60 gccttttcaa acagataatt ggcaagttcc tcgtttctat gctcaataag ctgatacatt 120 tcatcatacg acaaagtatg tgttgttgaa agtttgtcaa ttaaatttat catatttgtc 180 atgtttgtca taaagcatcc ccgtaatttt actgaaaata atgttcaaat aatgttcttt 240 aattaaataa tatcatattg ttaataattt atcaatcatc gtaatggatt ggattaaaat 300 attatactat aattaaaaaa atatattatt aaaatattgc gatgaatgta aaaaaaataa 360 gacaaacaaa tcaaaataag ttataattta atttaggatc attcagagaa aaatttaact 420 ttattgtaac aaggcaataa atggccccac taatttctta taaagtacag ggtgcggtct 480 gtattttcga cggtgggtgc gtttttgtat ggtaaaaaac tgttgacatg ggaaaacacc 540 caagctttat gaaaagcttg gatatataaa ataattttaa attttgggag gtagatctat 600 gctgaagaaa aaactgttga cccttttgac agtctttgct ctgctgactg tcggtatctg 660 cggaagtttt ttgccgttac ccaaagcatc cgcagcagct ctgatttacg atgattttga 720 aacaggtctg aacggatggg gaccaagagg accggaaacc gtcgaactta ccaccgagga 780 agcttactcg ggaagataca gtttgaaggt cagcggacgt accagcacat ggaacgggcc 840 catggttgac aaaaccgatg tgttgacttt gggcgaaagc tataagttgg gcgtatatgt 900 aaaattcgtg ggtgattcct attcaaatga gcaaagattc agtttgcagc ttcaatataa 960 cgacggagca ggagatgtat accaaaatat aaaaaccgcc acggtttaca agggaacatg 1020 gactttgctg gaaggacagc ttacagttcc cagccatgca aaggacgtaa aaatatatgt 1080 ggaaaccgaa tttaaaaatt ctccgagtcc gcaggacttg atggatttct atattgacga 1140 tttcacagca acacctgcaa atttgcctga aattgagaaa gatattccaa gcttgaaaga 1200 tgtctttgcc ggttatttca aagtgggtgg tgccgcaact gtggcggaac tggcgccgaa 1260 gcctgcaaaa gagcttttcc tcaagcatta taacagcttg acttttggta atgagttaaa 1320 accggaaagt gtacttgact atgatgctac aattgcttat atggaggcaa acggaggcga 1380 ccaggttaat ccgcagataa ccttgagagc ggcaagaccc ctgttggagt ttgcgaaaga 1440 acacaacata cctgtaagag gacataccct tgtatggcac agccagacac cggactggtt 1500 cttcagagaa aattactctc aggacgaaaa tgctccctgg gcatccaagg aagtaatgct 1560 gcaaaggttg gaaaactaca taaagaattt aatggaagct ttggcgaccg aatatccgac 1620 ggttaagttc tatgcatggg acgttgtgaa tgaggctgtt gatcctaata cttcagacgg 1680 tatgagaact ccgggttcga ataacaaaaa tcccggaagc tccctgtgga tgcaaaccgt 1740 tggaagagat tttattgtta aagcttttga atatgcaaga aaatatgctc ctgcggattg 1800 taaactcttc tacaatgact ataatgaata tgaagacaga aaatgtgatt ttattattga 1860 aattcttacc gaacttaaag ccaaaggcct ggttgacggt atgggtatgc aatcccactg 1920 ggttatggat tatccaagca taagcatgtt tgaaaaatcc atcagaagat atgcagcatt 1980 gggattggaa attcagctta ccgagctgga tataagaaat cctgacaaca gccagtgggc 2040 tttggaacgt caggctaatc gttataagga gcttgtaaca aaattggtcg atttgaaaaa 2100 agaaggcata aacattacgg cattggtatt ctggggaata accgacgcga caagctggct 2160 tggaggatat ccgctcctgt ttgacgcgga atacaaggca aaacctgcat tttatgctat 2220 agttaacagc gttccgccgc ttccgacaga accgccggtt caggttatac ccggtgacgt 2280 aaacggtgac ggtcgtgtaa attcatccga cttgactctt atgaaaagat accttttaaa 2340 atccataagc gacttcccga caccggaagg aaaaattgcg gcggatttaa acgaagacgg 2400 caaggtaaac tcgacagatt tgttagcgct gaaaaaactc gttctgagag aactttgatc 2460 aaaaacagat gaaaaccgtt gtgcttgcat gtctgcctaa tagatatttg tgacaaaatt 2520 cagtggggca atggctgaag gccaggttgc ccccctttta atacatgacc gcccgaggta 2580 ggatatagca tcaaggttaa agattgcatt ggagttgtat ttgtaaaagc taaaaacgga 2640 tggaatgaac gagaaaatcc gtcatcttga tgagattgaa aaacgtaaat tgttattact 2700 gactgttttg gttgccggta gtaaactaat gatgaaaact acagataata taccgaattg 2760 tttctattaa ttatgtattt tttaggggga tatgagttat gaaggttgag gtgtataaca 2820 ggattgtggg atatttggac gcccttacaa atattataag tttttatgga gtgctttact 2880 catataccta caaatttatt gaatacgata acgtaagcag tctggatgaa tgtgcggaga 2940 gatttttcaa cgaaagtccc ataagcaaac atgggacaag atttgatagc ctgagagaat 3000 tggatgattg gagaagcgat ttgtttgagt cgtgcagtca ttggttcttt aatgtattca 3060 gcatgcgcaa ttttgaggta tccatccagg atgaagacgg caacacaatg ccggcacaga 3120 aacacagaga aagcaaccgg gtttttaatg ggttgctgga gctattggag aaattttttg 3180 agggtgaaaa tgtggaagta tataaattaa taacagaacc tgcatgggtt gatgaatttg 3240 catgggaaca gtttttcttc aaatgtggca acaaggttta tgtattaagt ttttaccagg 3300 aaggatgagg ttcaatccgg cctgaatgaa atcc 3334 // |
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