 |
|
EBI DbfetchID D63938; SV 1; linear; genomic DNA; STD; PRO; 2660 BP. XX AC D63938; XX DT 04-OCT-1995 (Rel. 45, Created) DT 13-JUL-2006 (Rel. 88, Last updated, Version 6) XX DE Eubacterium ruminantium gene for xylanase, complete cds. XX KW . XX OS Eubacterium ruminantium OC Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; OC Eubacterium. XX RN [1] RP 1-2660 RA Kobayashi Y., Taguchi H., Koike S., Wakita M., Cann I.K.O., Hoshino S., RA Karita S.; RT ; RL Submitted (29-AUG-1995) to the EMBL/GenBank/DDBJ databases. RL Yasuo Kobayashi, Graduate School of Agriculture, Hokkaido University; RL Kita-ku, Sapporo, Hokkaido 060-8589, Japan RL (E-mail:kyas@anim.agr.hokudai.ac.jp) XX RN [2] RP 1-2660 RA Taguchi H., Koike S., Kobayashi Y., Cann I.K.O., Karita S.; RT "Partial characterization of structure and function of a xylanase gene from RT the rumen hemicellulolytic bacterium Eubacterium ruminatium"; RL Anim. Sci. J. 75:325-332(2004). XX DR StrainInfo; 827902; GA 195. XX FH Key Location/Qualifiers FH FT source 1..2660 FT /organism="Eubacterium ruminantium" FT /strain="GA195" FT /mol_type="genomic DNA" FT /db_xref="taxon:42322" FT CDS 73..2556 FT /codon_start=1 FT /transl_table=11 FT /product="xylanase" FT /db_xref="GOA:Q47871" FT /db_xref="HSSP:1I8A" FT /db_xref="InterPro:IPR001000" FT /db_xref="InterPro:IPR003305" FT /db_xref="InterPro:IPR008960" FT /db_xref="InterPro:IPR008979" FT /db_xref="InterPro:IPR010502" FT /db_xref="InterPro:IPR013781" FT /db_xref="InterPro:IPR015922" FT /db_xref="InterPro:IPR017853" FT /db_xref="UniProtKB/TrEMBL:Q47871" FT /protein_id="BAA09971.1" FT /translation="MAAAMMLSATACGKKKDEATSNDTAAVTTEAATSTVAEVEIDEDN FT ILVNPYFLDDDVTAWQAGQGSSKVGIADESVPLPDGYRRCAVIDRDPESSSPYDCFAQD FT ITSSISKGTEYQFEFYAMLSSDYEGAPAEQRTVEFAPYITANGSTTYLGSYSAEITGVS FT SQPLEPGKWTRFAGTFTPQWSGNLDQAVIRVIEQGTDYGNGDCVKGDYYIAGFKLLGEK FT AEPVVYSVEKDIPSLASVVSSEDGLGADSICGTAVTGSEIDDEFIQELISKHFNAVTLG FT NELKMDAVFGYSNDTVPAIEDEEADINGEKIKVPVMDHSRADKILDKILEINEKNGANI FT KVRGHVLVWHSQAPEWFFHEDYDKTKPYVDKDTMNLRLEWYIRELLNYYTGPDSKYRDL FT FYGWDVVNEAISDGTGTYRTDEEPGADQLSDSTHGSKSSWWKVYGSNEFIINAFKYANR FT YAPATLKLYYNDYNECDATKEAGIIELINAVKEADGTRIDGFGMQGHYSVNAPTVDRIK FT EAIQDYSQVVDEVMITEFDVKAGLGYDGTDETKDKEYTKQAHYFRKIYEAAKALNAEGV FT HFSGITMWGVVDKYSWLQSQNNVGGSSDGTSLQCPLLFDDNYQAKPAYWAFVDPSKLGE FT EPVVVRPEINIKKGSATVDGDIEEAWDAAEAVSLSIKLGSDISADGKLLWDEENLYVLV FT DVKDSVLNEDSEDDYQQDSVEIFVDENNGKSGGYEADDKQYRISFSNKQSFNGEKCVAE FT NITSATKKTDDGYVVEAAIKWTDITPEVGGKAGVELQVNDATAEGVRCGTISWADDTGT FT GYMSPEVFGTVVFEE" XX SQ Sequence 2660 BP; 854 A; 431 C; 662 G; 713 T; 0 other; tttaaagatg caatattaat tgttacagga gggtatgagg tgagaaagat aaaaggagtt 60 ttggcagttg gaatggctgc tgctatgatg ttatctgcca cagcgtgcgg caagaaaaag 120 gatgaggcaa caagtaatga tacagcagcg gtaacaacag aggctgctac atcaactgtt 180 gcggaggttg agattgatga ggataatatc cttgtaaatc cttacttttt agatgacgat 240 gttacagcat ggcaggcagg acagggatct tcaaaagttg gtatagctga tgaatcagtc 300 cctcttccgg atggttacag aagatgcgcg gtaattgaca gagatccgga atcatcttca 360 ccatatgact gttttgcaca ggatattaca tcaagtattt ccaagggaac agaatatcag 420 tttgaatttt atgctatgct ttcttcggat tatgaaggag cacctgctga gcagagaacc 480 gttgaatttg caccatatat tacagcaaat ggttcaacaa catatcttgg ttcatattca 540 gcagagatta caggtgtttc aagtcagccc cttgaacctg gaaagtggac aagatttgcc 600 ggaacattta ctccacagtg gagtggaaat cttgatcagg cagttataag agttattgag 660 cagggtacag attacggtaa cggtgattgc gtaaagggtg attactatat cgcaggattc 720 aagcttcttg gtgagaaggc tgagccggta gtatatagtg ttgagaagga tattccttcg 780 cttgcatcag ttgtttcatc agaagatgga ctcggtgcgg attctatttg cggcacagct 840 gttacaggtt ctgagataga tgatgaattt atccaggaac ttatttcaaa gcatttcaat 900 gcagtaacac ttggaaatga acttaaaatg gatgctgtct tcggttatag caatgacaca 960 gttcctgcta tagaagatga agaagcagat ataaacggag agaagatcaa ggttcctgtt 1020 atggatcatt ccagagcaga taagattctt gataagattc tcgagatcaa tgagaagaac 1080 ggagcaaata tcaaagtcag aggtcatgta cttgtatggc attcacaggc tcctgaatgg 1140 ttcttccacg aagattatga taagacaaag ccatatgttg ataaagatac tatgaacctc 1200 agacttgagt ggtacatcag agaacttctt aattactaca caggtcctga cagtaagtat 1260 agagatcttt tctacggatg ggatgtcgta aatgaagcaa tcagcgacgg gacaggtaca 1320 tacagaacag atgaagagcc gggtgcagat cagctttctg attcaacaca tggttcaaag 1380 tcaagctggt ggaaagtgta cggcagcaat gaattcatta taaatgcatt taagtatgca 1440 aacagatatg cacctgcaac actcaaactt tattacaatg attacaatga gtgtgatgca 1500 acaaaagaag caggtattat tgaacttatc aatgctgtta aagaagcaga cggaacacgt 1560 attgacggtt tcggtatgca gggacattat tcggtaaatg ctcctacagt tgacagaatt 1620 aaagaagcaa tccaggatta ttctcaggtt gttgatgaag ttatgatcac agagttcgat 1680 gttaaggccg gacttggtta tgacggaaca gacgaaacaa aggataagga atatacaaag 1740 caggcacatt atttcagaaa gatttatgaa gcagctaagg cattaaatgc agaaggtgtt 1800 catttcagcg gaatcactat gtggggtgtt gttgataaat attcatggct tcagtctcag 1860 aataatgtag gtggttcatc agacggaact tcacttcagt gtccacttct ctttgatgat 1920 aactatcagg ctaagcctgc atattgggca tttgtagatc cttctaagct tggtgaagaa 1980 ccggttgttg ttcgtcctga gattaatatc aagaagggaa gcgcaacagt tgatggagac 2040 atcgaagaag catgggatgc agcagaggca gtgtctcttt ctataaagct tggttcagat 2100 atcagtgctg acggaaagct tctttgggat gaagagaatc tctatgttct tgttgatgta 2160 aaggatagcg ttctcaatga ggatagcgaa gatgattatc agcaggattc cgttgaaatc 2220 tttgtagatg agaataacgg aaagagcggc ggttatgaag ctgatgataa gcagtacaga 2280 ataagcttct caaataagca gagctttaac ggtgagaagt gcgtagcaga gaatattact 2340 tcagctacaa agaagacaga tgacggatat gttgttgaag ctgctattaa gtggacagat 2400 atcacacctg aggttggcgg aaaggccggt gttgaactcc aggtaaatga tgcaacagca 2460 gaaggtgtca gatgtggtac tataagctgg gctgatgata caggaacagg atatatgagt 2520 cctgaagtat tcggtacagt tgtattcgaa gaataataac agacacagat aaataaagat 2580 gcgaatatac ccccccggga atatgcggat tagagacgcg cgaaatggaa actttagcat 2640 ttataatcta agatcccggg 2660 // |
|