EBI Dbfetch

ID   D38018; SV 1; linear; genomic DNA; STD; PLN; 1643 BP.
XX
AC   D38018;
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DT   29-SEP-1994 (Rel. 41, Created)
DT   08-DEC-2006 (Rel. 90, Last updated, Version 7)
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DE   Beta webbiana mitochondrial nad9 gene, petG pseudogene, complete cds.
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KW   .
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OS   Beta webbiana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons;
OC   Caryophyllales; Amaranthaceae; Beta.
OG   Mitochondrion
XX
RN   [1]
RP   1-1643
RA   Mikami T.;
RT   ;
RL   Submitted (20-AUG-1994) to the EMBL/GenBank/DDBJ databases.
RL   Tetsuo Mikami, Hokkaido University, Faculty of Agriculture; Kita 9 Nishi 9,
RL   Sapporo 060, Japan (Tel:011-716-2111(ex.2442), Fax:011-716-0879)
XX
RN   [2]
RX   DOI; 10.1007/BF00326162
RX   PUBMED; 7736615.
RA   Kubo T., Yanai Y., Kinoshita T., Mikami T.;
RT   "The chloroplast trnP-trnW-petG gene cluster in the mitochondrial genomes
RT   of Beta vulgaris, B. trigyna and B. webbiana: evolutionary aspects";
RL   Curr. Genet. 27(3):285-289(1995).
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DR   RFAM; RF00005; tRNA.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1643
FT                   /organism="Beta webbiana"
FT                   /organelle="mitochondrion"
FT                   /strain="WB11"
FT                   /mol_type="genomic DNA"
FT                   /tissue_type="leaf"
FT                   /db_xref="taxon:35923"
FT   CDS             18..596
FT                   /codon_start=1
FT                   /gene="nad9"
FT                   /product="NADH dehydrogenase subunit 9"
FT                   /db_xref="GOA:Q34011"
FT                   /db_xref="InterPro:IPR001268"
FT                   /db_xref="InterPro:IPR010218"
FT                   /db_xref="InterPro:IPR020396"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q34011"
FT                   /protein_id="BAA07215.1"
FT                   /translation="MDNQFIFKYSWETLPKKWVKKIEKSEHGNRSDTNTDYPFQLLCFL
FT                   KLHTYTRFQVLIDICGVDYPSRKRRFEVVYNLLSTRYNSRIRLQTSADEVTRISPVVRL
FT                   FPSAGRWEREVWDMFGVSSINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKR
FT                   VVSEPIEMTQEFRYFDFASPWEQRNGNEG"
FT   misc_feature    719..1367
FT                   /note="sequence homology to chloroplast DNA"
FT                   /citation=[2]
FT   promoter        737..744
FT                   /function="putative promoter"
FT                   /note="purine-rich motif"
FT                   /citation=[2]
FT   tRNA            822..895
FT                   /pseudo
FT                   /gene="trnP-UGG"
FT                   /product="Pro-tRNA"
FT                   /anticodon=(pos:856..858,aa:Pro)
FT                   /note="sequence homology to chloroplast trnP-UGG"
FT                   /citation=[2]
FT   tRNA            1069..1142
FT                   /gene="trnW-CCA"
FT                   /product="Trp-tRNA"
FT                   /anticodon=(pos:1103..1105,aa:Trp)
FT                   /note="sequence homology to chloroplast trnW-CCA"
FT                   /citation=[2]
FT   CDS             complement(1256..1367)
FT                   /pseudo
FT                   /codon_start=1
FT                   /gene="petG"
FT                   /product="cytochrome b6/f complex subunit 5"
FT                   /note="sequence homology to chloroplast petG gene"
FT                   /citation=[2]
XX
SQ   Sequence 1643 BP; 535 A; 299 C; 343 G; 466 T; 0 other;
     aagctttctt tctctttatg gataaccaat tcattttcaa atatagttgg gagactttac        60
     ccaagaaatg ggtaaaaaaa atagaaaaat cagaacatgg gaatagatct gataccaata       120
     cggactaccc atttcaattg ttgtgctttc ttaaattgca tacctataca aggtttcaag       180
     ttttgatcga tatttgcgga gttgattatc cttctcgaaa acgaagattt gaagtggtct       240
     ataatttact gagtactcgg tataattcgc gcattcggct acaaaccagt gcagacgaag       300
     taacacgaat atctccggta gtccgtctat ttccatcagc cggccggtgg gagcgagaag       360
     tttgggatat gtttggtgtt tcttccatca atcatccgga tctacgccgt atattaacag       420
     attatggttt cgagggtcat ccattacgaa aagactttcc tctgagtgga tatgtagaag       480
     tacgctatga tgatccagag aaacgtgtgg tttctgagcc cattgagatg acccaagaat       540
     ttcgctattt cgattttgct agtccttggg aacaacgtaa cggtaacgaa ggataattcg       600
     gaatcagaat aagtccagtc caggggacaa atcaatagga aatgctattt gcttcgtaag       660
     aagacttcta tgaaatgaaa gagtttcacg ggaattgtct tgatcgtcgg atatcattaa       720
     aaaaaaaaga aatggcaaga agaatttaat atcgatagag aaaaaaacga tctggaaaac       780
     agggaaaggg ttctccacaa tgacactgta gactaattga aaaggatgta gcgcagcttg       840
     gtagcgcctt tgttttgggt aaagaatgtc acgggttcca atcctgtcat ccctacctat       900
     tctttcccct gggcagtaag gggggatcga ttgagatcga ttcaattggg gcatagataa       960
     tctgttattt ttatgatact atatatgata gtatatgtat gcagggtgta gtattgggtt      1020
     acaaaaagaa tccttttctt tacagtctta tctattgtga taagaaaagc gctcttagtt      1080
     cagttcggta gaatgtgggt ctccaaaacc caatgtcgta ggttcaaatc ctacagagcg      1140
     tgattccctt cttgttaggt cgaattagac tgaaataaat tcactaactt gaacagtaat      1200
     ctaaatttga cctctaatcc acaggaggtc aatcaaaaaa agacttttta attaatcaaa      1260
     ggtccaactg atcaccacgt ctgtattgta aatatgcagt tacgaataat ccagccaaag      1320
     taataggaat tagacctaag acgattccaa atagaaaaac ttcaatcgat gaactccttg      1380
     ctgcatcgat gctcgagaaa gcaagagcgg gatgagtgcc aactacaact actaatgcta      1440
     attgaagctc ctttcctgac agcgttatgg cattcaggag tttcatcagc aatggtgaga      1500
     gtggcctata ctagttgcga gataaaagta attcttccaa acagcggtaa tcccgcatct      1560
     gaacctatct tctagcatac gctaatacag taagaaaggc actaagacac taatgcagca      1620
     ataagactaa agccagaaag aaa                                              1643
//