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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   D38017; SV 1; linear; genomic DNA; STD; PLN; 1423 BP.
XX
AC   D38017;
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DT   29-SEP-1994 (Rel. 41, Created)
DT   08-DEC-2006 (Rel. 90, Last updated, Version 7)
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DE   Beta trigyna mitochondrial nad9 gene, petG pseudogene, complete cds.
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KW   .
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OS   Beta trigyna
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons;
OC   Caryophyllales; Amaranthaceae; Beta.
OG   Mitochondrion
XX
RN   [1]
RP   1-1423
RA   Mikami T.;
RT   ;
RL   Submitted (20-AUG-1994) to the EMBL/GenBank/DDBJ databases.
RL   Tetsuo Mikami, Hokkaido University, Faculty of Agriculture; Kita 9 Nishi 9,
RL   Sapporo 060, Japan (Tel:011-716-2111(ex.2442), Fax:011-716-0879)
XX
RN   [2]
RX   DOI; 10.1007/BF00326162
RX   PUBMED; 7736615.
RA   Kubo T., Yanai Y., Kinoshita T., Mikami T.;
RT   "The chloroplast trnP-trnW-petG gene cluster in the mitochondrial genomes
RT   of Beta vulgaris, B. trigyna and B. webbiana: evolutionary aspects";
RL   Curr. Genet. 27(3):285-289(1995).
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DR   RFAM; RF00005; tRNA.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1423
FT                   /organism="Beta trigyna"
FT                   /organelle="mitochondrion"
FT                   /strain="SP753012-O"
FT                   /mol_type="genomic DNA"
FT                   /tissue_type="leaf"
FT                   /db_xref="taxon:19769"
FT   CDS             18..596
FT                   /gene="nad9"
FT                   /product="NADH dehydrogenase subunit 9"
FT                   /db_xref="GOA:Q33994"
FT                   /db_xref="InterPro:IPR001268"
FT                   /db_xref="InterPro:IPR010218"
FT                   /db_xref="InterPro:IPR020396"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q33994"
FT                   /protein_id="BAA07214.1"
FT                   /translation="MDNQFIFKYSWETLPKKWVKKIEKSEHGNRSDTNTDYPFQLLCFL
FT                   KLHTYTRFQVLIDICGVDYPSRKRRFEVVYNLLSTRYNSRIRLQTSADEVTRISPVVSL
FT                   FPSAGRWEREVWDMFGVSSINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKR
FT                   VVSEPIEMTQEFRYFDFASPWEQRNGNEG"
FT   misc_feature    719..1419
FT                   /note="sequence homology to chloroplast DNA"
FT                   /citation=[2]
FT   promoter        737..744
FT                   /function="putative promoter"
FT                   /note="purine-rich motif"
FT                   /citation=[2]
FT   tRNA            824..897
FT                   /pseudo
FT                   /gene="trnP-UGG"
FT                   /product="Pro-tRNA"
FT                   /anticodon=(pos:858..860,aa:Pro)
FT                   /note="sequence homology to chloroplast trnP-UGG"
FT                   /citation=[2]
FT   tRNA            1071..1144
FT                   /gene="trnW-CCA"
FT                   /product="Trp-tRNA"
FT                   /anticodon=(pos:1105..1107,aa:Trp)
FT                   /note="sequence homology to chloroplast trnW-CCA"
FT                   /citation=[2]
FT   CDS             complement(1258..1376)
FT                   /pseudo
FT                   /codon_start=1
FT                   /gene="petG"
FT                   /product="cytochrome b6/f complex subunit 5"
FT                   /note="sequence homology to chloroplast petG gene"
FT                   /citation=[2]
XX
SQ   Sequence 1423 BP; 466 A; 246 C; 288 G; 423 T; 0 other;
     aagctttctt tctctttatg gataaccaat tcattttcaa atatagttgg gagactttac        60
     ccaagaaatg ggtcaaaaaa atagaaaaat cagaacatgg gaatagatct gataccaata       120
     cggactaccc atttcaattg ttgtgctttc ttaaattgca tacctataca aggtttcaag       180
     ttttgatcga tatttgcgga gttgattatc cttctcgaaa acgaagattt gaagtggtct       240
     ataatttact gagtactcgg tataattcgc gcattcggct acaaaccagt gcagacgaag       300
     taacacgaat atctccggta gtcagtctat ttccatcagc tggccggtgg gagcgagaag       360
     tttgggatat gtttggtgtt tcttccatca atcatccgga tctacgccgt atattaacag       420
     attatggttt cgagggtcat ccattacgaa aagactttcc tctgagtgga tatgtagaag       480
     tacgctatga tgatccagag aaacgtgtgg tttctgagcc cattgagatg acccaagaat       540
     ttcgctattt cgattttgct agtccttggg aacaacgtaa cggtaacgaa ggataattcg       600
     gaatcagaat aagtccagtc caggggacaa atcaatagga aatgctattt gcttcgtaag       660
     aagacttcta tgaaatgaaa gagtttcacg ggaattgtct tgatcgtcgg atatcattaa       720
     aaaaaaaaga aatggcaaga ataatttcat atcgatagag aaaaaaaaac gatctggaaa       780
     acagggaaag ggttctccac aatgacactg tagactaatt gaaaaggatg tagcgcagct       840
     tggtagcgcc tttgttttgg gtaaagaatg tcacgggttc caatcctgtc atccctacct       900
     attctttccc ctgggcagta aggggggatc gattgagatc gattcaattg gggcatagat       960
     aatctgttat ttttatgata ctatatatga tagtatatgt atgcagggtg tagtattggg      1020
     ttacaaaagg aatccttttc tttacagtct tatctattgt gataagaaaa gcgctcttag      1080
     ttcagttcgg tagaatgtgg gtctccaaaa cccaatgtcg taggttcaaa tcctacagag      1140
     cgtgattccc ttcttgttag gtcgaattag actgaaataa attcactaac ttgaacagta      1200
     atctaaattt gacctctaat ccacaggagg tcaatcaaaa aaatcttttt taattaatca      1260
     aaggtccaac tgatcaccac gtctgtattg taaatatgca gttacgaata atccagccaa      1320
     agtaaagtaa taggaattag acctaagacg attccaaata gaaaaacttc aatcatttca      1380
     attcgtttga aaaaaaaaaa aagaaaactc tatccttaag ctt                        1423
//
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