EBI Dbfetch

ID   D32122; SV 1; linear; genomic DNA; STD; PRO; 1858 BP.
XX
AC   D32122;
XX
DT   15-JUL-1994 (Rel. 40, Created)
DT   17-APR-2005 (Rel. 83, Last updated, Version 6)
XX
DE   Pseudomonas marginalis gene for pectate lyase, complete cds.
XX
KW   .
XX
OS   Pseudomonas marginalis
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
OC   Pseudomonadaceae; Pseudomonas.
XX
RN   [1]
RP   1-1858
RA   Nikaidou N.;
RT   ;
RL   Submitted (07-JUL-1994) to the EMBL/GenBank/DDBJ databases.
RL   Naoki Nikaidou, Niigata University, Department of Appl. Biol. Chem.; 8050
RL   Ikarashi-2, Niigata, Niigata 950-21, Japan (Tel:81-25-262-6645,
RL   Fax:81-25-263-1659)
XX
RN   [2]
RP   1-1858
RX   PUBMED; 7763884.
RA   Nikaidou N., Kamio Y., Izaki K.;
RT   "Molecular cloning and nucleotide sequence of the pectate lyase gene from
RT   Pseudomonas marginalis N6301";
RL   Biosci. Biotechnol. Biochem. 57(6):957-960(1993).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1858
FT                   /organism="Pseudomonas marginalis"
FT                   /strain="N6301"
FT                   /mol_type="genomic DNA"
FT                   /clone="pPe16301"
FT                   /db_xref="taxon:298"
FT   CDS             517..1659
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /standard_name="pectinase"
FT                   /product="pectate lyase"
FT                   /db_xref="GOA:Q51915"
FT                   /db_xref="InterPro:IPR002022"
FT                   /db_xref="InterPro:IPR006626"
FT                   /db_xref="InterPro:IPR011050"
FT                   /db_xref="InterPro:IPR012334"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q51915"
FT                   /protein_id="BAA06848.1"
FT                   /translation="MTKPSTFTACKLASAVFGALLFSSVPAHAADIWLDVATTGWATQN
FT                   GGTKGGSRAAANDIYTVKNAAELKKALSASAGSNGRIIKITGIIDVSEGKVYTKTADMK
FT                   VRGRLDIPGKTTIVGIGSNAEIREGFFYAKENDVIIRNITVENPWDPEPIFDKDDGADG
FT                   NWNSEYDGLTVEGANNVWVDHVTFTDGRRTDDQNGTEHERPKQHHDGALDVKNGANFVT
FT                   ISYSVFKSHEKNNLIGSSDSRTTDDGKLKVTIHNTLFENISARAPRVRYGQVHLYNNYH
FT                   VGSTSHKVYPFSYAHGVGKNSKIFSERNAFEIAGISGCDKIAGDYGGSVYRDTGSTLNG
FT                   SALSCSWSSSIGWTPPYSYTPLAADKVAADVKAKAGAGKL"
FT   sig_peptide     517..606
XX
SQ   Sequence 1858 BP; 466 A; 565 C; 479 G; 348 T; 0 other;
     tcgacgaaca gcagttggct atcttcatga ggcgctttcc cgagcatatc aaggcggtcg        60
     ccatcgatac ttttgctctg gaaaaggacc gtttcagctc gccgttgacg ggcatagcca       120
     atgctcaact gacgccgcat atcgccggca atactacgaa ggcaatcagg atggcctcac       180
     ggcaaatcgt agataaaatt tccgcattca gacttgatcg agaaattcac ggttttgagc       240
     agtagccccc aatcggctgt agccgtttag aaatcacttt gatgcccttc catccacgaa       300
     gggctcattg ccgtccagtc cggccggcgg ctgtagtctt gcgaaagaga gcaaatcata       360
     acgcaatcag ttgtacgaca tcgcaagaga cacatgatag tatttctaat gcagcggacg       420
     ttcgattcgc tgcaccggtg gcaaggacgt ccgctcgaga aacgcgcaaa ccctgtgcgc       480
     gtttaaaact caagttaatc aaggatctga ttactcatga caaaaccctc aactttcacc       540
     gcctgcaaac tggccagtgc cgtattcggc gccctgctgt tttccagcgt tcccgcacat       600
     gcggcggata tttggctgga cgtcgccacg accggctggg ccacgcagaa tggcgggacc       660
     aagggcggct cccgggctgc cgcgaacgac atctacaccg ttaaaaacgc agccgaactg       720
     aaaaaagccc tcagtgcttc ggcaggcagc aacggtcgca tcatcaagat caccggcatt       780
     atcgacgtca gcgaaggcaa ggtttacacc aaaacggctg acatgaaggt tcgcgggcgc       840
     ctggatattc ccggtaagac cacaatcgtg ggcatcggca gcaatgcgga gatccgcgaa       900
     ggtttctttt acgcgaaaga aaatgacgta atcatccgca acatcaccgt cgaaaatccc       960
     tgggaccccg agccaatctt tgataaggac gatggtgccg acggcaactg gaactccgag      1020
     tacgacggcc tgaccgtcga aggcgccaac aacgtgtggg tcgatcacgt gaccttcacc      1080
     gacggccgcc gtaccgatga ccagaacggc accgaacacg agcgtcccaa gcaacatcac      1140
     gacggcgcgc tggacgtcaa gaacggcgcc aacttcgtaa ccatctctta ctcggtgttc      1200
     aagtcccacg aaaaaaacaa cctgatcggt tccagcgact cgcgcaccac cgacgatggc      1260
     aagctcaagg tcaccatcca caacaccctg ttcgagaaca tctccgcccg tgcgccccgc      1320
     gtgcgctacg gccaagtgca tctgtacaac aactaccacg tgggcagcac cagccataag      1380
     gtgtacccgt tctcatatgc ccatggcgtg ggcaagaact cgaaaatctt ctccgaacgt      1440
     aacgccttcg agatcgccgg tatcagcggt tgcgacaaga tcgccggcga ttacggcggc      1500
     agcgtctacc gtgacaccgg ctcgacactc aatggcagcg cactgagctg ctcgtggagt      1560
     tcgagcatcg gctggacccc accctacagc tacacgccgc tggctgccga caaggtcgct      1620
     gcggacgtca aagcgaaagc tggagccggt aagctctaag cgatagtgca acgtcagtga      1680
     tataaaaaag ccctcggtga cgagggcttt ttcgtgcctg tgcctactgc accaactggt      1740
     tgatctcgat gatcggcaac agtactgcca gcacgatcag cagcaccacc gcgcccatca      1800
     ccacgatcat caaaggctca agcagtgccg tcatgcccat cgcccggcgt tcgatatc        1858
//