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EBI DbfetchID D21202; SV 1; linear; genomic DNA; STD; PRO; 3323 BP. XX AC D21202; XX DT 10-JUN-1994 (Rel. 40, Created) DT 26-FEB-2008 (Rel. 94, Last updated, Version 8) XX DE Vibrio sp. agaB gene for beta-agarase, complete cds. XX KW . XX OS Vibrio sp. OC Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; OC Vibrio. XX RN [1] RP 1-3323 RA Sugano Y.; RT ; RL Submitted (15-OCT-1993) to the EMBL/GenBank/DDBJ databases. RL Contact:Yasushi Sugano Japan Tabacco Inc., Seawater Science Research RL Laboratory; 4-13-20 Sakawa, Odawara, Kanagawa 256, Japan XX RN [2] RX PUBMED; 8285681. RA Sugano Y., Matsumoto T., Kodama H., Noma M.; RT "Cloning and sequencing of agaA, a unique agarase 0107 gene from a marine RT bacterium, Vibrio sp. strain JT0107"; RL Appl. Environ. Microbiol. 59(11):3750-3756(1993). XX RN [3] RP 1-3323 RX DOI; 10.1016/0167-4781(94)90109-0 RX PUBMED; 8193156. RA Sugano Y., Matsumoto T., Noma M.; RT "Sequence analysis of the agaB gene encoding a new beta-agarase from Vibrio RT sp. strain JT0107"; RL Biochim. Biophys. Acta 1218(1):105-108(1994). XX FH Key Location/Qualifiers FH FT source 1..3323 FT /organism="Vibrio sp." FT /strain="JT0107" FT /mol_type="genomic DNA" FT /db_xref="taxon:678" FT CDS 259..3126 FT /codon_start=1 FT /transl_table=11 FT /gene="agaB" FT /product="beta-agarase" FT /EC_number="3.2.1.81" FT /db_xref="GOA:P48840" FT /db_xref="InterPro:IPR017853" FT /db_xref="UniProtKB/Swiss-Prot:P48840" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="BAA04744.1" FT /translation="MVEVMKFTKNKIAALLSLTLLGVYGCGSTPSSSDAEGAVEDVGGT FT IPDFESAAFFKKVKKDHRKAEVVSDQGVTSGSSALKVNFDSVSEANKFKYWPNVKVHPD FT SGFWNWNAKGSLSLDITNPTDSPANIILKLADNVGVMGSGDNQLNYAVNVPAGETVPVE FT MLFNGTKRKLDGYWGGEKINLRNIVEFQIFVQGPMDAQTVIIDNFNLVDATGDFIEASG FT QEVKVSGPIPTVASITSFDEGQPTFVAFDRSAAATVTELKTDMGGLLAVKLAATNAYPN FT ITFKAPQPWDWSEYGDFSLAFDLESKADEPLQLFVRVDDAENENWGGTANGVVDSMSSY FT VTLAPGDDGTFYLPLGQTGSQIVSGMRAEPPKKSYNAQAISYGWGEKSLDTSNIVSFQL FT YLQNPTKDAEFNIKSVRLIPNIDADATRYEGLIDQYGQFTGSEWPKKITEDEELETMGK FT LAKMSLKSTSQMPGRSIYGGWADGPKLKGTGFFRTEKVDGKWSLVDPQGNLFFATGVDN FT IRMDDTVTITGHDFADKDKRSGKEVASEVRRSMFTWLPEDDDVLAENYDYANWVHSGAL FT KKGEVFSFYGANLQRKYGGTFSEAEKVWKDITIDRMVDWGFTTLGNWADPMFYDNKKVA FT YVANGWIFGDHARISTGNDYWGPIHDPFDPEFVNSVKAMTKKLMTEVDKNDPWMMGVFV FT DNEISWGNTKNDANHYGLVVNALSYDMKKSPAKAAFTEHLKEKYWAIEDLNTSWGVKVA FT SWAEFEKSFDHRSRLSKNMKKDYAEMLEMLSAKYFSTVRAELKKVLPNHLYLGAPFADW FT GVTPEIAKGAAPYVDVMSYNLYAEDLNSKGDWSKLAELDKPSIIGEFHFGSTDSGLFHG FT GIVSAASQQDRAKKYTNYMNSIADNPYFVGAHWFQYIDSPTTGRAWDGENYNVGFVSIT FT DTPYVPLVEAAKKFNQDVYMLRYKK" XX SQ Sequence 3323 BP; 989 A; 714 C; 797 G; 823 T; 0 other; aacggatcgt ccagtactgc gtttcttcgt gacttacggt caatctgata ctcaaaccac 60 ggtttacaac aaccgccatg gtgaaggtgt agagaaccca agttgggaat ggcgtcacaa 120 cccttacgta acagagaagg gtaaaaactc tgctactaca gttggcgcac aattcgaaac 180 gtggtggtag gccgcccata gttataccca cttagcacta gagcccgtaa gccacggctt 240 gcgggcctcc cactcgtaat ggtagaagtt atgaaattta caaaaaataa aattgctgcg 300 ctgttatcgc tcactttgtt gggtgtgtac ggatgtggct caactcctag ctcgagcgac 360 gccgaaggcg ctgttgaaga tgtaggcgga acgattccag attttgaatc tgccgctttt 420 ttcaaaaaag ttaaaaaaga ccatcgtaaa gccgaagtgg ttagcgacca aggtgttact 480 agcggaagta gtgcgctaaa agtaaacttt gattcggtat ccgaggctaa caaatttaag 540 tactggccaa atgttaaagt acacccagat tctggctttt ggaactggaa tgcgaaaggc 600 agcttaagcc tagacattac caacccaact gatagcccag caaacatcat tctaaaattg 660 gctgacaacg tgggcgtaat gggctctggc gacaaccaat taaactacgc ggttaatgta 720 cccgctggcg aaacagtgcc agttgagatg ttatttaacg gcaccaaacg taagttagat 780 ggctactggg gtggcgagaa aatcaactta cgtaacattg tagaattcca aatctttgtg 840 caaggtccaa tggatgcaca aactgtcatt atcgataact ttaacttagt ggatgctacc 900 ggtgacttta ttgaagcctc aggccaagaa gttaaagtaa gtggtccaat tccaacggtt 960 gcttcaatta ctagctttga tgaaggccaa cctacctttg ttgcttttga ccgcagtgca 1020 gcggcaacgg taaccgagct aaaaaccgac atgggcggtt tgctagctgt taaattagct 1080 gcgactaacg cctaccctaa tatcactttt aaagcgccac aaccttggga ttggagcgag 1140 tacggtgatt ttagtttagc gtttgatcta gaaagtaaag cagacgaacc tttacagttg 1200 tttgttcgcg ttgatgacgc agaaaatgaa aactggggcg gcactgcaaa cggcgtagta 1260 gacagtatgt ctagctacgt aacgctagca cctggtgacg acggtacctt ctacttgccg 1320 ctaggccaaa ccggtagcca aatcgtttct ggtatgcgtg ccgagccacc taaaaagtcc 1380 tacaacgcgc aagcgattag ttatggctgg ggtgaaaaga gcttagatac gtcaaacatt 1440 gtatctttcc agctatacct gcaaaaccca actaaagatg cagagttcaa tattaagagt 1500 gttcgactta ttccaaatat tgatgcagat gcaacccgtt atgaaggttt gattgaccaa 1560 tatggtcagt ttactggttc tgaatggccg aagaaaatta ctgaagacga agaactagaa 1620 accatgggta agctggcaaa aatgtcgctt aaatcaacca gccaaatgcc aggtcgaagc 1680 atttatggtg gctgggccga tggtcctaag ctgaaaggca caggtttctt ccgtactgaa 1740 aaagtagacg gtaagtggtc gttagtagac ccacaaggca acttgttctt cgcaaccggt 1800 gtcgacaaca ttcgtatgga cgacacagta accattactg gccacgactt tgccgacaaa 1860 gacaaacgta gcggtaaaga agtggcttct gaagttcgcc gttcaatgtt tacttggtta 1920 ccagaagatg acgatgtatt agccgagaac tatgactacg caaactgggt gcattcaggg 1980 gcacttaaga aaggcgaagt atttagtttc tatggtgcta acttgcaacg taaatatggc 2040 ggtactttct cagaagctga aaaagtgtgg aaagacatca ccatagatcg catggttgat 2100 tggggcttca caaccctagg taactgggca gatccaatgt tctacgacaa caaaaaagtt 2160 gcttacgtag caaatggttg gatttttggc gaccacgcac gcattagcac tggtaacgac 2220 tactggggtc ctattcacga tccgtttgac ccagagtttg taaacagcgt taaagcgatg 2280 actaaaaagc taatgacaga agtagacaaa aatgacccat ggatgatggg ggtgtttgtc 2340 gacaacgaga ttagctgggg taacaccaaa aacgacgcaa accactacgg tttggtggtt 2400 aatgcgctta gctacgacat gaagaagagc ccggctaaag cagcctttac cgagcactta 2460 aaagagaagt actgggccat tgaagatcta aacactagct ggggcgtgaa agttgcgtcg 2520 tgggcagagt ttgagaagtc atttgatcac cgctctcgct taagcaagaa catgaagaaa 2580 gattatgccg aaatgctaga aatgctttct gctaaatact tctcaacggt tcgtgctgag 2640 cttaagaaag tactgcctaa tcacctatac ctgggcgcac cgtttgctga ctggggtgtt 2700 acgccagaga ttgccaaagg tgctgcacct tacgtagacg tgatgagcta caacttgtac 2760 gccgaagacc ttaactcaaa gggtgattgg agcaagttag cagagctaga taagccaagc 2820 attattggtg agttccactt cggttcaact gactcaggct tattccacgg cggtatcgtg 2880 tcggcagcta gccagcaaga tcgcgctaag aaatacacca actacatgaa cagtattgcc 2940 gacaaccctt acttcgtagg tgctcactgg ttccaataca ttgactctcc aacaacgggt 3000 cgtgcttggg atggtgaaaa ctacaacgta ggttttgttt caatcactga tacaccatac 3060 gttccactgg ttgaagcagc taagaaattc aaccaagacg tttacatgct tcgttacaaa 3120 aaataatcgc aacaacgatt tagcactcct cagttaggtg gggagtgcaa tctgctaggt 3180 acaaggaatg ggcaggaaat atgaagatta aatttttatc tgcagcaatt gctgcaagct 3240 tagcattgcc attaagtgct gctactttag tcacctcttt tgaggaagcc gactacagca 3300 gctctgaaaa caatgctgaa ttc 3323 // |
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