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EBI DbfetchID D14721; SV 1; linear; genomic DNA; STD; PRO; 3205 BP. XX AC D14721; XX DT 30-JAN-1994 (Rel. 38, Created) DT 20-FEB-2008 (Rel. 94, Last updated, Version 4) XX DE Vibrio sp. JT0107 agaA gene for beta-agarase, complete cds. XX KW . XX OS Vibrio sp. JT0107 OC Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; OC Vibrio. XX RN [1] RP 1-3205 RA Sugano Y.; RT ; RL Submitted (25-MAR-1993) to the EMBL/GenBank/DDBJ databases. RL Contact:Yasushi Sugano Japan Tobacco Inc., Seawater Science Research RL Laboratory; 4-13-20 Sakawa, Odawara, Kanagawa 256, Japan XX RN [2] RX PUBMED; 8285681. RA Sugano Y., Matsumoto T., Kodama H., Noma M.; RT "Cloning and sequencing of agaA, a unique agarase 0107 gene from a marine RT bacterium, Vibrio sp. strain JT0107"; RL Appl. Environ. Microbiol. 59(11):3750-3756(1993). XX FH Key Location/Qualifiers FH FT source 1..3205 FT /organism="Vibrio sp. JT0107" FT /strain="JT0107" FT /mol_type="genomic DNA" FT /db_xref="taxon:47913" FT misc_signal 21..26 FT /note="regulatory signal" FT misc_signal 42..47 FT /note="regulatory signal" FT CDS 121..3108 FT /codon_start=1 FT /transl_table=11 FT /gene="agaA" FT /product="beta-agarase" FT /EC_number="3.2.1.81" FT /db_xref="GOA:P48839" FT /db_xref="InterPro:IPR017853" FT /db_xref="InterPro:IPR020008" FT /db_xref="UniProtKB/Swiss-Prot:P48839" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="BAA03541.1" FT /translation="MKIKFLSAAIAASLALPLSAATLVTSFEEADYSSSENNAEFLEVS FT GDATSEVSTEQATDGNQSIKASFDAAFKPMVVWNWASWNWGAEDVMSVDVVNPNDTDVT FT FAIKLIDSDILPDWVDESQTSLDYFTVSANTTQTFSFNLNGGNEFQTHGENFSKDKVIG FT VQFMLSENDPQVLYFDNIMVDGETVTPPPSDGAVNTQTAPVATLAQIEDFETIPDYLRP FT DGGVNVSTTTEIVTKGAAAMAAEFTAGWNGLVFAGTWNWAELGEHTAVAVDVSNNSDSN FT IWLYSRIEDVNSQGETATRGVLVKAGESKTIYTSLNDNPSLLTQDERVSALGLRDIPAD FT PMSAQNGWGDFVALDKSQITAIRYFIGELASGETSQTLVFDNMRVIKDLNHESAYAEMT FT DAMGQNNLVTYAGKVASKEELAKLSDPEMAALGELTNRNMYGGNPDSSPATDCVLATPA FT SFNACKDADGNWQLVDPAGNAFFSTGVDNIRLQDTYTMTGVSSDAESESALRQSMFTEI FT PSDYVNENYGPVHSGPVSQGQAVSFYANNLITRHASEDVWRDITVKRMKDWGFNTLGNW FT TDPALYANGDVPYVANGWSTSGADRLPVKQIGSGYWGPLPDPWDANFATNAATMAAEIK FT AQVEGNEEYLVGIFVDNEMSWGNVTDVEGSRYAQTLAVFNTDGTDATTSPAKNSFIWFL FT ENQRYTGGIADLNAAWGTDYASWDATSPAQELAYVAGMEADMQFLAWQFAFQYFNTVNT FT ALKAELPNHLYLGSRFADWGRTPDVVSAAAAVVDVMSYNIYKDSIAAADWDADALSQIE FT AIDKPVIIGEFHFGALDSGSFAEGVVNATSQQDRADKMVSFYESVNAHKNFVGAHWFQY FT IDSPLTGRAWDGENYNVGFVSNTDTPYTLMTDAAREFNCGMYGTDCSSLSNATEAASRA FT GELYTGTNIGVSHSGPEAPDPGEPVDPPIDPPTPPTGGVTGGGGSAGWLSLLGLAGVFL FT LRRRKV" XX SQ Sequence 3205 BP; 871 A; 683 C; 785 G; 866 T; 0 other; taagaaattc aaccaagacg tttacatgct tcgttacaaa aaataatcgc aacaacgatt 60 tagcactcct cagttaggtg gggagtgcaa tctgctaggt acaaggaatg ggcaggaaat 120 atgaagatta aatttttatc tgcagcaatt gctgcaagct tagcattgcc attaagtgct 180 gctactttag tcacctcttt tgaggaagcc gactacagca gctctgaaaa caatgctgaa 240 ttcttggaag tgtctggaga tgccacttct gaagtttcaa cagaacaagc cactgatggt 300 aatcaatcga ttaaagcgtc ttttgacgcg gctttcaaac caatggttgt ttggaactgg 360 gcaagttgga actggggtgc tgaagatgtt atgtcagtag atgttgttaa ccctaacgac 420 actgacgtta cctttgctat taagctaatc gatagtgata ttcttcctga ttgggtagat 480 gagtctcaaa cctcattgga ctactttacg gtttcagcta ataccacgca gacctttagc 540 tttaacttaa atggcggcaa cgagttccaa actcatggcg aaaactttag taaagataaa 600 gttatcggtg tgcagttcat gctctctgaa aacgatcctc aagtgttgta ctttgacaac 660 attatggttg atggcgaaac agtcactccg ccaccaagtg atggtgcagt gaatacacaa 720 accgcgcctg tagccacctt agcgcaaatc gaagactttg aaaccattcc agattactta 780 cgacctgatg gtggggtaaa cgtttcaact actactgaga ttgtgactaa aggcgctgca 840 gcaatggctg ccgagtttac tgcaggttgg aacggtttag tgtttgcagg tacttggaat 900 tgggctgaac taggtgaaca caccgcagtt gccgttgacg tttcaaataa tagcgatagc 960 aatatctggt tgtactcacg tatcgaagat gtaaatagcc aaggcgaaac agcgactcgc 1020 ggcgtattgg ttaaagctgg cgaatcgaaa accatctaca ccagcttaaa tgacaaccct 1080 tcattgctta ctcaagatga gcgtgtgtca gctttaggtt tgcgtgatat tccggcagac 1140 ccaatgagcg cccaaaacgg ctggggtgat tttgttgctt tagacaaatc tcaaattacc 1200 gctattcgtt acttcattgg cgaattagcc agcggtgaga ctagccaaac acttgtgttt 1260 gataacatgc gtgtgattaa agaccttaac cacgaatcag cctatgcaga aatgactgat 1320 gctatggggc aaaacaactt agtcacttat gcaggtaaag ttgccagcaa agaagagtta 1380 gctaagttaa gtgatccgga aatggctgct ttgggtgagt taaccaaccg caatatgtac 1440 ggtggtaacc cagattcgtc accagctaca gactgtgtgc tagctacgcc tgcctcgttt 1500 aacgcttgta aagacgctga tggtaactgg caattggtag acccagcagg taatgcgttc 1560 ttctcaaccg gtgttgataa cattcgtttg caagatactt acaccatgac cggcgtgtcg 1620 agtgacgccg aatctgagtc tgcacttcgc cagtcaatgt ttacagaaat tccaagtgat 1680 tatgtaaatg aaaactatgg ccctgtgcat agtggacctg tttctcaagg ccaagctgta 1740 agtttttacg ctaataactt aattacccgc cacgctagcg aagacgtatg gcgagacatt 1800 actgttaagc gcatgaaaga ctggggcttt aacaccttag gtaactggac cgatcctgcg 1860 ttgtatgcaa acggtgacgt tccttacgtg gcaaatggtt ggtcaacctc tggtgccgat 1920 cgtcttccag ttaaacaaat tggcagcggc tactggggac cacttcctga tccgtgggat 1980 gctaactttg ctaccaatgc cgccacaatg gctgcagaga tcaaagctca ggttgaaggc 2040 aacgaagagt acttagtggg tatttttgtt gataacgaaa tgagctgggg caatgtcact 2100 gatgttgaag gctctcgtta tgcgcaaacg ctagcggtgt tcaataccga cggtactgat 2160 gcaacaacta gccctgctaa aaatagcttt atttggttct tagaaaacca gcgttatacc 2220 ggtggcattg ctgacctaaa cgcagcctgg ggaaccgatt atgcgtcttg ggatgcgacg 2280 tcgccagcgc aagagttagc ttatgtggct ggcatggaag ctgatatgca gttccttgct 2340 tggcagtttg ctttccagta cttcaacacc gtaaacacag cattaaaagc tgagttacca 2400 aaccacttgt acttgggctc tcgctttgca gattggggac gtactcctga tgtagtaagt 2460 gctgctgcgg ctgttgttga tgtaatgagc tacaacatct acaaagacag cattgcagct 2520 gccgattggg atgctgatgc cttaagtcaa atcgaagcca ttgataagcc ggtaattatt 2580 ggcgagttcc acttcggtgc gcttgatagt ggttcgtttg cagaaggtgt agtaaatgcc 2640 acttcgcaac aagatcgtgc agacaaaatg gttagctttt acgaatcagt aaatgcccat 2700 aaaaactttg taggtgcgca ttggttccaa tacatcgatt caccattaac gggtcgtgca 2760 tgggatggcg aaaactacaa cgttggtttt gttagcaata ctgacacgcc atatacattg 2820 atgacagatg ctgcgcgtga gtttaactgt ggcatgtacg gcactgactg ctctagctta 2880 agcaatgcta ctgaagctgc ttcgagagcg ggtgagttgt ataccggtac caatattggt 2940 gttagccact ctggcccaga agcgccagat ccaggtgagc cagtagatcc accaattgat 3000 ccgccaacac caccaacggg tggcgtaact ggcggtggcg gtagcgcagg ttggttatcg 3060 ctactaggtt tggccggcgt atttttacta agacgtcgta aagtgtaagg actgtgccgc 3120 ctcgtaaatt aagttgtatt gcgaggcggc ctttttattt tcaggaagaa atatgaagta 3180 tctatatatt gtccgcgggc cattt 3205 // |
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