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EBI DbfetchID D13268; SV 1; linear; genomic DNA; STD; PRO; 3078 BP. XX AC D13268; XX DT 05-OCT-1992 (Rel. 33, Created) DT 26-FEB-2008 (Rel. 94, Last updated, Version 7) XX DE Clostridium stercorarium xylA gene encoding xylosidase, complete cds. XX KW alpha-L-arabinofuranosidase; beta-D-xylosidase. XX OS Clostridium stercorarium OC Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; OC Clostridium. XX RN [1] RP 1-3078 RA Sakka K.; RT ; RL Submitted (21-SEP-1992) to the EMBL/GenBank/DDBJ databases. RL Contact:Kazuo Sakka Mie University, Laboratory of Applied Microbiology; RL 1515 Kamihamacho, Tsu, Mie 514-8507, Japan XX RN [2] RP 1-3078 RX PUBMED; 7763495. RA Sakka K., Yoshikawa K., Kojima Y., Karita S., Ohmiya K., Shimada K.; RT "Nucleotide sequence of the Clostridium stercorarium xylA gene encoding a RT bifunctional protein with beta-D-xylosidase and alpha-L-arabinofuranosidase RT activities, and properties of the translated product"; RL Biosci. Biotechnol. Biochem. 57(2):268-272(1993). XX FH Key Location/Qualifiers FH FT source 1..3078 FT /organism="Clostridium stercorarium" FT /strain="F-9" FT /mol_type="genomic DNA" FT /db_xref="taxon:1510" FT -35_signal 437..442 FT -10_signal 460..465 FT RBS 509..514 FT CDS 522..1943 FT /codon_start=1 FT /transl_table=11 FT /gene="xylA" FT /product="xylosidase" FT /db_xref="GOA:P48790" FT /db_xref="InterPro:IPR006710" FT /db_xref="UniProtKB/Swiss-Prot:P48790" FT /protein_id="BAA02527.1" FT /translation="MRKQRFNPYLPSWEYIPDAEPYVFNGRVYIYGSHDRFNGHAFCLN FT DYVCWSAPVDDLSEWRYEGVIYRKTDDPLNPDGRMCLYAPDVTLGPDGRYYLYYVLDKV FT PVVSVAVCDTPAGKYEFYGYVRYADGTRLGEREGDWPQFDPAVLTEGERTYLYTGFCPK FT GDKSRKGAMATVLGPDMLTVVEEPVIIVPSEPYSRGSGFEGHEFFEAPSIRKKGDTYYF FT IYSSVVMHELCYATSKHPTKGFKYGGVIVSNCDLHIDSYKPAEKPMYYGGNNHGSIVEI FT NGEWYIFYHRHTNGTSFSRQGCMEKIKILEDGSIPQVEMTSCGSADEPLPGRGEYPAYI FT ACNLFCGEESVYTDLTGAWMNNQFPKITQDGKDGDEEPGYIANMKDSATAGFKYFDCKG FT IKSVKIKVRGYCRGVFEVKTSWNGEVLGKIPVEFSNIWTEFSASIPIPDGIHALYFTYR FT GSGSASLKSFTLCTD" FT terminator 1982..2000 XX SQ Sequence 3078 BP; 865 A; 598 C; 667 G; 948 T; 0 other; gcagatgtgg caacaatcat catgacagcc ataaccagtg agataattct tgcttttttc 60 attttttgct ctcctttcat ttttttatat taaagattat taattacgtt ttttctcacc 120 ggctgccaat ttccacagag ttgctaattg attggtaaaa agttgtaaaa ttcatatact 180 gccatatttt attattgtta attttattat atttaataga attttgggtt gtcaagataa 240 aacgttttat attattaatt ttgtgccgac tttatatgag ttaatatttt taacttcgct 300 tagcgccttg ataacactac aatagtgtct ggcagggaat aattgccgaa cctgagtgac 360 caaagggcat ataataaacg tttataccta atctaatata tgcaatagga tttattaaat 420 gaatcggtaa taaaagttgt taaattaaat aaattactgt atattgaaac taaggtaaaa 480 aaagatataa agaaattccg gaaagaagag gaggcgaaat aatgagaaaa cagagattca 540 acccatatct tccttcatgg gaatatatac ccgatgccga accttacgtg tttaacggca 600 gagtatatat ttacggctct catgaccggt ttaacggcca cgccttttgt ctaaacgatt 660 atgtatgctg gtctgcgcct gttgacgatc tttccgagtg gcggtatgaa ggtgtgatat 720 acagaaaaac cgatgatccg cttaatcctg atggcagaat gtgcctctat gcgcctgatg 780 ttactttggg gcctgacgga aggtattatt tgtattatgt tctggataaa gtccctgttg 840 tgtcggttgc ggtttgcgat actcctgcgg gtaaatacga attttacggt tatgttcgtt 900 acgctgacgg aacgcgtctt ggcgaaaggg aaggggattg gccgcagttt gatccggcgg 960 tacttacaga aggggaaaga acatatctgt atacaggttt ttgtcccaag ggtgacaaat 1020 caaggaaggg agcaatggct accgttttgg gacctgatat gctgacagtg gttgaagagc 1080 ctgtgattat tgttccaagt gaaccataca gcaggggaag cggttttgaa gggcatgaat 1140 tttttgaggc gccttccatc agaaaaaaag gagacacata ctattttata tattcttcgg 1200 ttgtaatgca tgaactttgc tatgctacaa gcaagcatcc gactaaaggt tttaaatatg 1260 gcggcgtgat agtcagtaac tgtgatcttc atattgattc gtataagcct gcggaaaagc 1320 caatgtatta tggtggaaac aatcatggca gtattgttga aatcaacgga gaatggtata 1380 tcttttatca tcgtcatacc aacgggacca gtttcagccg gcagggatgc atggaaaaaa 1440 ttaaaattct tgaagacggt tcaattcctc aggtggaaat gacgtcgtgc ggttccgccg 1500 acgaaccgtt acccggaaga ggggaatatc ctgcatatat agcatgtaac ctgttctgcg 1560 gtgaagaatc cgtttatacc gatttaactg gcgcatggat gaacaatcag tttccgaaga 1620 tcacccagga cgggaaggac ggggatgaag agccggggta catagcgaac atgaaagact 1680 ctgcaacggc gggcttcaag tattttgact gcaaggggat caaatcggtc aagattaaag 1740 tgcgcgggta ttgccgaggt gtttttgagg taaaaacatc ctggaatggg gaagtacttg 1800 gaaaaatccc tgttgaattt tcaaatatat ggactgagtt ctcagccagt atacccattc 1860 cggacggaat acatgcactg tattttacat acagggggtc gggcagtgca agcctcaaat 1920 cattcactct gtgtactgac taaagttagt ccatgctgtt ttcaactggg ttggtatttt 1980 caagcgaagc atcttcgctt atttttttta ccgactcgcg aataacaagc ctgcaaggta 2040 ttttaatgat ttctccggga gcaggttcat agccctgttc gagcatctgt atcattactt 2100 ttgcagcctc atgccctatt ttccccagtt gaatctcatt tgttgtgagg ccgggattaa 2160 tacattcagc aatctctttg ttgtcataac cggctaccga aatatcttct cctattctga 2220 tacctttttc ataaagatag tggtataagc ccaccgccat taaatcattc atgcagaaga 2280 ccgcggtaac gccctgactt acaaggcttt ctgcaagttt gtagcctgat gctctcatcc 2340 agtcgccgta tttgacaagg tcaggattga acagaatttt ttcttcaaac agtgccttct 2400 gaaatccttc cagacgtttc attgtatgta tattatcagg ggtgcctgcg attacgccta 2460 ttttacgatg ccccattgaa atcaggtatt tggcaatatc atatcctcct ttttcatcat 2520 caattacaat tgaggtatac ttcggcgaat cagatattcc atagacaaca attcccggaa 2580 tgccgaagtc atcggggaaa cattttataa tacggcagtg accggcaaca tatacaatac 2640 cgtccacctt tattgagagc agttccttga cggaaggctg aagtaccgag ttatattttt 2700 gactgtcgtt ataccacgtg ttggaccatt tataatacag ccgcatgtca acaagaacgg 2760 tgcggtaatt atgctcctcg cagtaagcca ttattgcccc gacaataggg gccgtgctga 2820 atatatttaa atcttccaca ataatgccga taatccgtgt tttttgctta cgaatgccct 2880 gggcaaaata atttggctta taaccggtcc gacggacaac ttcaagtacc ttctgccctg 2940 ttttttcgct gacgtttgtt ttgccgttca gtatgtttga gactgtactt acggatacat 3000 tacataattg cgctatttct ttcagtgtaa ccaattttcc cgttcctttc cattgtaacc 3060 ggtaaaacat ttaatcag 3078 // |
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