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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   D10064; SV 1; linear; genomic DNA; STD; PRO; 1415 BP.
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AC   D10064; D01243;
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DT   06-APR-1992 (Rel. 31, Created)
DT   18-DEC-2007 (Rel. 94, Last updated, Version 4)
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DE   Pectobacterium carotovorum pel III gene for pectate lyase III precursor,
DE   complete cds.
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KW   .
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OS   Pectobacterium carotovorum
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
OC   Enterobacteriaceae; Pectobacterium.
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RN   [1]
RP   1-1415
RX   PUBMED; 1368679.
RA   Yoshida A., Izuta M., Ito K., Kamio Y., Izaki K.;
RT   "Cloning and characterization of the pectate lyase III gene of Erwinia
RT   carotovora Er";
RL   Agric. Biol. Chem. 55(4):933-940(1991).
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CC   Data kindly submitted in computer readable form by:
CC   Aruto Yoshida
CC   Department of Agricultural Chemistry
CC   Tohoku University
CC   1-1 Tsutsumi-dori, Amamiya-cho
CC   Aoba-ku, Sendai 981
CC   Japan
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FH   Key             Location/Qualifiers
FH
FT   source          1..1415
FT                   /organism="Pectobacterium carotovorum"
FT                   /strain="Er"
FT                   /mol_type="genomic DNA"
FT                   /note="synonym: Erwinia carotovora"
FT                   /db_xref="taxon:554"
FT   RBS             204..208
FT   CDS             218..1342
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /gene="pel III"
FT                   /product="pectate lyase III precursor"
FT                   /EC_number="4.2.2.2"
FT                   /db_xref="GOA:P0C1C2"
FT                   /db_xref="InterPro:IPR002022"
FT                   /db_xref="InterPro:IPR006626"
FT                   /db_xref="InterPro:IPR011050"
FT                   /db_xref="InterPro:IPR012334"
FT                   /db_xref="UniProtKB/Swiss-Prot:P0C1C2"
FT                   /protein_id="BAA00953.1"
FT                   /translation="MKYLLPSAAAGLLLLAAQPTMAANTGGYATTDGGDVAGAVKKTAR
FT                   SMQDIIDIIEAAKLDSNGKKVKGGAYPLVITYNGNEDALIKAAEANICGQWSKDARGVE
FT                   IKEFTKGITIIGTNGSSANFGIWLTKSSDIVIRNMRFGYMPGGAQDGDAIRIDNTPNVW
FT                   IDHNEIFAKNFECAGTKDGDTTFESAIDIKKASTNVTISYNYIHGIKKVGLSGFSSSDT
FT                   GRDLTYHHNIYDDVNARLPLQRGGQVHAYNNLYTGITSSGLNVRQKGIALIERNWFENA
FT                   KNPVTSRYDGSNFGTWELRNNNVMSPADFAKYNITWDKDSKPYVNAEDWKSTGTFASVP
FT                   YSYSPVSAQCVKDKLANYAGVNKNLAVLTAANCN"
FT   sig_peptide     218..283
FT   mat_peptide     284..1339
FT                   /product="pectate lyase III"
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SQ   Sequence 1415 BP; 412 A; 334 C; 328 G; 341 T; 0 other;
     tttaaaatag atacttatta agcattgatg tttccatcat tattcatgag atatatttaa        60
     tacctaaata ttgaattatt tttcttttat ggtaagactt atcttggttt tcaataaacc       120
     ttgatttcat ttttattgaa acaccaaaat aatataatct gggttatgtg gaacattaat       180
     acccaaacaa aaattcaatt ccaaggagag taccttaatg aaatacctac tgccttctgc       240
     agccgctggg ctgttattgc ttgcggccca accaacgatg gcggcaaata cggggggtta       300
     tgccaccact gacggtggtg acgttgccgg tgccgtgaaa aaaacagcgc gctccatgca       360
     agatattatt gatatcatcg aagccgcgaa gctggattcc aatggcaaga aagtgaaagg       420
     tggcgcttac ccgcttgtca tcacctataa cggtaatgaa gacgcgctga tcaaagccgc       480
     tgaggccaac atctgcggcc agtggagtaa ggatgcccga ggtgtagaaa tcaaagaatt       540
     caccaaaggg attaccatca tcggaaccaa tggatcgtcc gccaacttcg ggatctggct       600
     gacaaaatca tccgatatcg tcatacgtaa catgcgtttt ggttacatgc cgggcggcgc       660
     gcaggatggt gatgccattc gtatcgataa cacgccgaac gtctggattg accacaacga       720
     aatcttcgcg aaaaactttg aatgcgcagg tacaaaagac ggtgacacga catttgaatc       780
     cgcgattgat atcaaaaaag cgtcaaccaa cgtgaccatt tcgtacaact acattcacgg       840
     catcaaaaag gtcggcctga gcggcttcag cagcagcgat acgggccgtg atctgactta       900
     tcatcacaat atttacgacg acgttaacgc tcgcctcccg ctgcaacgtg gcggccaggt       960
     tcacgcgtac aacaacctgt atactggcat caccagttct ggcctgaacg tgcgtcagaa      1020
     agggattgcg ctgatcgaac gtaactggtt cgagaatgcg aaaaacccgg tgacctcacg      1080
     ttacgacggt tccaacttcg gtacctggga gctgcgtaat aacaacgtca tgagcccggc      1140
     tgatttcgct aaatacaaca tcacctggga taaagattcc aagccctacg tgaatgcaga      1200
     agactggaaa agcactggca cattcgcttc tgttccttac agctactctc cggtttcggc      1260
     acagtgcgtg aaggacaaac tggcgaacta tgctggcgtg aacaaaaatc ttgcggtgct      1320
     gacggcagca aattgcaact aattgcgatg tgtaaagcat gaaaggtaaa taagcggact      1380
     tcaggctccg accctcattg tcctgtgcta accgg                                 1415
//
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