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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   D00218; SV 1; linear; genomic DNA; STD; PRO; 1855 BP.
XX
AC   D00218;
XX
DT   11-APR-1990 (Rel. 23, Created)
DT   16-JUN-2005 (Rel. 84, Last updated, Version 7)
XX
DE   Pectobacterium carotovorum gene for pectate lyase X precursor, complete
DE   cds.
XX
KW   .
XX
OS   Pectobacterium carotovorum
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
OC   Enterobacteriaceae; Pectobacterium.
XX
RN   [1]
RP   1-1855
RA   Ito K., Kobayashi R., Nikaido N., Izaki K.;
RT   "DNA structure of pectate lyase I gene cloned from Erwinia carotovora";
RL   Agric. Biol. Chem. 52:479-487(1988).
XX
CC   Another open reading frame highly homologous to the PAL I gene was
CC   found downstream from the PAL I gene and designated the PAL X gene.
CC   This gene had 81% homology in 606 bp from the translational start
CC   codon with the PAL I gene.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1855
FT                   /organism="Pectobacterium carotovorum"
FT                   /strain="Er 18"
FT                   /mol_type="genomic DNA"
FT                   /note="Sau3AI site"
FT                   /note="synonym: Erwinia carotovora"
FT                   /db_xref="taxon:554"
FT   CDS             140..856
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /product="pectate lyase X precursor"
FT                   /db_xref="GOA:P16530"
FT                   /db_xref="HSSP:1AIR"
FT                   /db_xref="InterPro:IPR012334"
FT                   /db_xref="UniProtKB/Swiss-Prot:P16530"
FT                   /protein_id="BAA00156.1"
FT                   /translation="MKYLLPTAAAGLLLLAAQPAMAANTGGYATTDGGEVSGAVKKTAR
FT                   SMKEIVDIIEAAQVDSKGKKVKGGAYPLIITYSGNEDSLIKAAEKNICGQWSKDARGVQ
FT                   IKEFTKGTYYPGHQWLIRQLRCLDCETLLTLWYVICALAICQAARKHGDAIRIDNSPNV
FT                   WIDHNEIFAKNFECKGTPDNDTTFESAVDIKKGSTNVTVSVSVKEVGTLVNLSRLFFPF
FT                   RIQRYRAFRLPVSCLP"
FT   sig_peptide     140..205
FT   mat_peptide     206..853
FT                   /product="pectate lyase X"
XX
SQ   Sequence 1855 BP; 439 A; 505 C; 451 G; 460 T; 0 other;
     gatcttattt tttgaccaca cttcccttgg tttttcacca aaattgaaat tcatttttgt        60
     tgaaaaattt ttacctgtta catcgggcat agggatcgat aaatgcccat gaaaattcta       120
     ttccaaggag acagtgataa tgaaatacct attgcctacg gcagccgctg gattgctatt       180
     actcgcggct caacccgcaa tggccgcaaa tacgggcggc tatgccacta cggatggtgg       240
     agaagtgtcc ggtgccgtga aaaaaacggc acgttctatg aaagaaattg tggatattat       300
     tgaagccgcg caagtggatt caaaaggcaa gaaagtcaaa ggcggtgctt acccgctcat       360
     catcacctat agcggtaatg aagactcatt aatcaaagcg gctgaaaaga atatttgcgg       420
     ccagtggagt aaggacgctc gcggcgtaca aatcaaagag ttcaccaaag gcacttacta       480
     tccagggcac caatggctca tccgccaact tcggtgtctg gattgtgaaa ctcttctaac       540
     gttgtggtac gtaatatgcg ctttggctat atgccaggcg gcgcgcaagc acggcgatgc       600
     cattcgtatc gataactccc cgaacgtctg gatcgaccac aacgagatct ttgccaagaa       660
     ctttgagtgt aaaggtacgc cagacaatga caccaccttt gaatcggctg tcgatatcaa       720
     aaaagggtca actaacgtca cggtatcggt aagtgtcaag gaagttggca ccttggttaa       780
     tttaagccgc ctgtttttcc cgttccggat tcaacgttac cgggccttcc ggctgccagt       840
     ttcttgtctt ccctgaccag cgctcaggat gcgctttctg tgcctgacga tacagttcat       900
     cccgctgggt cagcagagct ctgtcttcac cacgatgtcg ttctgccggt gtcacaaagc       960
     gtattccact gtgacgatgc tcttcgttat accagtgggt aaatttatcc acccactgac      1020
     gcgcctcact cagcgttctg aaccccgacg agggccactg tggcacatat ttcagcgtcc      1080
     ggaacagcga ctctgcatac gcattatcat tactgactcg cggtctgctg tgagacgctg      1140
     tgatattcag ttcatgtagt ttcatccgca gcgtctgcga tttcatcgcc gcaccattat      1200
     cagcatgtaa caccaggggc tgacgccagc agccttcccg tatcacgcta cgttgcatca      1260
     gtgccgctgc ctgttcacca ctttccgtct catacacctc ataaccggtg atttttcggc      1320
     tgtacaggtc gagtatcata tacagataaa accagcgacc acgcactaca gagggtagcc      1380
     aggtgatgtc ccatgaccac acctgacaag gcccggacgc tataaaggtt gtcggtgctg      1440
     ataccttctg ctgctgccgt gcctgacgtc ctctgcgatg gacttcacct gagcgacgca      1500
     acacccgata gaatgttgac tcactggcca ggtaaatacc tctgtcggcc aggcgcggca      1560
     cgatttgtga ggggggaagg ctggcatatt ccggttcatg acagacatcc ggtatccggt      1620
     tttcttcctc cggactcagc cgattaaacg gcacggctct taccgcccca gctcgccggt      1680
     cacggggaaa gcactgccag cgtcgccagg tacgcaggct gatgttgact tcacggcagc      1740
     aatggccagt cgcgctcccg aggttaccgc ttcatttatc cagagaataa actgtgtcgc      1800
     tcaccttcag gtgtcagtcg tccccgtcgg cttccccgta gtagtctgta agctt           1855
//
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