EBI Dbfetch

ID   CY019605; SV 1; linear; viral cRNA; STD; VRL; 1518 BP.
XX
AC   CY019605;
XX
DT   16-FEB-2007 (Rel. 90, Created)
DT   16-FEB-2007 (Rel. 90, Last updated, Version 1)
XX
DE   Influenza B virus (B/Texas/37/1988) segment 6, complete sequence.
XX
KW   .
XX
OS   Influenza B virus (B/Texas/37/1988)
OC   Viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus B.
XX
RN   [1]
RP   1-1518
RA   Spiro D., Sengamalay N., Boyne A., Bera J., Halpin R., Wang S., Ghedin E.,
RA   Zaborsky J., Subbu V., Sparenborg J., Gallagher T., Overton L., Althoff R.,
RA   Liu X., Salzberg S.L., Sitz J., Katzel D., Neupane R., Shumway M., Koo H.,
RA   Griesemer S., StGeorge K., Bennett R., Taylor J., Klimov A., Hall H.,
RA   Balish A., Xu X., Shaw M., Cox N., Bao Y., Bolotov P., Dernovoy D.,
RA   Kiryutin B., Lipman D.J., Tatusova T.;
RT   "The NIAID Influenza Genome Sequencing Project";
RL   Unpublished.
XX
RN   [2]
RP   1-1518
RG   The NIAID Influenza Genome Sequencing Consortium
RA   ;
RT   ;
RL   Submitted (14-FEB-2007) to the EMBL/GenBank/DDBJ databases.
RL   on behalf of TIGR/Wadsworth-NYSDOH and CDC/NCBI, National Center for
RL   Biotechnology Information, NIH, Bethesda, MD 20894, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1518
FT                   /organism="Influenza B virus (B/Texas/37/1988)"
FT                   /segment="6"
FT                   /host="Human"
FT                   /lab_host="MDCK 2 Egg 2 passage(s)"
FT                   /strain="Influenza B virus (B/Texas/37/1988)"
FT                   /mol_type="viral cRNA"
FT                   /country="USA:Texas"
FT                   /collection_date="1988"
FT                   /db_xref="taxon:416673"
FT   gene            29..328
FT                   /gene="NB"
FT   CDS             29..328
FT                   /codon_start=1
FT                   /gene="NB"
FT                   /product="NB protein"
FT                   /db_xref="GOA:A3DQX9"
FT                   /db_xref="InterPro:IPR007288"
FT                   /db_xref="UniProtKB/TrEMBL:A3DQX9"
FT                   /protein_id="ABN50605.1"
FT                   /translation="MNNATFNYTNVNPISHIRGSVIITICVSFTVILTVFGYIAKIFIK
FT                   NNCTNNDIGLRERIKCSGCEPFCNKRDDISSPRTGVDIPSFILPGLNLSESTPN"
FT   gene            36..1433
FT                   /gene="NA"
FT   CDS             36..1433
FT                   /codon_start=1
FT                   /gene="NA"
FT                   /product="neuraminidase"
FT                   /db_xref="GOA:A3DQY0"
FT                   /db_xref="InterPro:IPR001860"
FT                   /db_xref="InterPro:IPR011040"
FT                   /db_xref="UniProtKB/TrEMBL:A3DQY0"
FT                   /protein_id="ABN50606.1"
FT                   /translation="MLPSTIQTLTLFLTSGGVLLSLYVSASLSYLLYSDILLRFSSKIT
FT                   APTMTLDCANASNVQAVNRSATKEMTFLLPEPEWTYPRLSCQGSTFQKALLISPHRFGE
FT                   ARGNSAPLIIREPFIACGPKECKHFALTHYAAQPGGYYNGTREDRNKLRHLISVKLGKI
FT                   PTVENSIFHMAAWSGSACHDGREWTYIGVDGPDSNALIKIKYGEAYTDTYHSYANNILR
FT                   TQESACNCIGGDCYLMITDGSASGISECRFLKIREGRIIKEIFPTGRVEHTEECTCGFA
FT                   SNKTIECACRDNSYTAKRPFVKLNVETDTAEIRLMCTETYLDTPRPDDGSITGPCESDG
FT                   DKGRGGIKGGFVHQRMASKIGRWYSRTMSKTERMGMELYVKYDGDPWTDSDALAPSGVM
FT                   VSMKEPGWYSFGFEIKDKKCDVPCIGIEMVHDGGKKTWHSAATAIYCLMGSGQLLWDTV
FT                   TGVDMAL"
XX
SQ   Sequence 1518 BP; 491 A; 294 C; 346 G; 387 T; 0 other;
     tctcaaaact gaagcaaata ggccaaaaat gaacaatgct accttcaact atacaaacgt        60
     taaccctatt tctcacatca gggggagtgt tattatcact atatgtgtca gcttcactgt       120
     catacttact gtattcggat atattgctaa gattttcatc aaaaataact gcaccaacaa       180
     tgacattgga ttgcgcgaac gcatcaaatg ttcaggctgt gaaccgttct gcaacaaaag       240
     agatgacatt tcttctccca gaaccggagt ggacataccc tcgtttatct tgccagggct       300
     caacctttca gaaagcactc ctaattagcc ctcatagatt cggagaagcc agaggaaact       360
     cagctccctt aataataagg gaacctttta ttgcttgtgg accaaaggaa tgcaaacact       420
     ttgctctaac ccattatgca gctcaaccag ggggatacta caatggaaca agagaggaca       480
     gaaacaagct gaggcatctg atttcagtca aattaggcaa aatcccaact gtagaaaact       540
     ccattttcca catggcagct tggagtgggt ccgcatgcca tgatggtagg gaatggacat       600
     atatcggagt tgatggccct gacagtaatg cattgatcaa aataaaatat ggagaagcat       660
     atactgacac ataccattcc tatgcaaaca acatcctaag aacacaagaa agtgcctgca       720
     attgcatcgg gggagattgt tatcttatga taactgatgg ctcagcttca ggaattagtg       780
     aatgcagatt tcttaagatt cgagagggtc gaataataaa agaaatattt ccaacaggaa       840
     gagtagagca cactgaagaa tgcacatgcg gatttgccag caataaaacc atagaatgtg       900
     cctgtagaga taacagttac acagcaaaaa gaccctttgt caaattaaat gtggagactg       960
     atacagctga gataagactg atgtgcacag agacttattt ggacaccccc agaccagatg      1020
     atgggagcat aacagggcct tgcgaatctg atggggacaa agggcgtgga ggcatcaagg      1080
     gaggatttgt tcatcaaaga atggcatcca agattggaag atggtactcc cgaacgatgt      1140
     ctaaaactga gagaatgggg atggaactgt atgtcaagta tgatggagac ccatggactg      1200
     acagtgatgc ccttgctcct agtggagtaa tggtctcaat gaaagaacct ggttggtatt      1260
     cttttggctt cgaaataaaa gataagaaat gtgatgtccc ctgtattggg atagagatgg      1320
     tacacgatgg tggaaaaaag acttggcact cagcagcaac agccatttac tgtttgatgg      1380
     gctcaggaca attgctatgg gacactgtca caggtgttga tatggctctg taatggagga      1440
     atggttgaat ctgttctaaa ccctttgttc ctattttgtt tgaacaattg tccttactgg      1500
     acttaattgt ttctgaaa                                                    1518
//