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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CR942427; SV 2; linear; mRNA; STD; VRT; 1099 BP.
XX
AC   CR942427;
XX
DT   18-APR-2005 (Rel. 83, Created)
DT   04-OCT-2006 (Rel. 89, Last updated, Version 5)
XX
DE   Xenopus tropicalis finished cDNA, clone TTpA008k20
XX
KW   .
XX
OS   Xenopus (Silurana) tropicalis (western clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus;
OC   Silurana.
XX
RN   [1]
RP   1-1099
RA   Amaya E., Ashurst J.L., Bonfield J.K., Croning M.D.R., Chen C-K.,
RA   Davies R.M., Francis M.D., Garrett N., Gilchrist M.J., Grafham D.V.,
RA   McLaren S.R., Papalopulu N., Rogers J., Smith J.C., Taylor R.G., Voigt J.,
RA   Zorn A.M.;
RT   ;
RL   Submitted (04-OCT-2006) to the EMBL/GenBank/DDBJ databases.
RL   Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK. E-mail enquiries:
RL   trop@sanger.ac.uk
XX
CC   Sanger Xenopus tropicalis EST/cDNA project.
CC   
CC   This sequence is from a Xenopus Gene Collection (XGC) library, from a
CC   library constructed by Nigel Garrett. cDNA was prepared from RNA extracted
CC   from tadpoles. EcoRI-NotI cut cDNA was then ligated into pCS107 with EcoRI
CC   at the 5' end and NotI at the 3' end.
CC   Vector: pCS107; Site_1: EcoRI; Site_2: NotI
CC   Host: Escherichia coli DH10B
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FH   Key             Location/Qualifiers
FH
FT   source          1..1099
FT                   /organism="Xenopus (Silurana) tropicalis"
FT                   /mol_type="mRNA"
FT                   /dev_stage="tadpole (stage 35-40)"
FT                   /clone_lib="XGC-tadpole"
FT                   /clone="TTpA008k20"
FT                   /db_xref="taxon:8364"
FT   mRNA            1..1029
FT                   /locus_tag="TTpA008k20.1-001"
FT                   /product="masa"
FT   CDS             214..993
FT                   /locus_tag="TTpA008k20.1-001"
FT                   /standard_name="OTTXETP00000008468"
FT                   /product="masa"
FT                   /note="match: proteins: Q5PPH0 Q9UHY7"
FT                   /db_xref="GOA:Q28C69"
FT                   /db_xref="InterPro:IPR006439"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q28C69"
FT                   /protein_id="CAJ83209.1"
FT                   /translation="MALFSVPPPVTVILLDIEGTTTPITFVKDVLFPYVKENIKKYLLE
FT                   HWQEKECQEDVTQLQKQAEKDSHLDGFVPIPSGVSDNTTEHMIQAVVDNVYWQMSFDRK
FT                   TTALKQLQGHMWRSAYISGQLKGEVYEDVVPSIRQWRELGIKLYIYSSGSIDAQKLLFG
FT                   YSIEGDLLKLLDGHFDTNIGHKVESKSYRNIADNIGCLPENILFLTDVVKEALAAEKAG
FT                   LHVAVVVRPGNAALTDEDKSNCCCITSFHQIHFPSQK"
XX
SQ   Sequence 1099 BP; 377 A; 214 C; 216 G; 292 T; 0 other;
     tttttagcca aggagcaaac atttattccg gcaacgaacg tctaataact ctacagctaa        60
     atatactttt accttgccca ttaatccgta tgtccgtaaa cctcccttcc tgttacggcg       120
     aagcagtttt ttttattcag ccacatgagc gttaggagct gacttgaacg tcgcaccaat       180
     tcagcaacgc ggggcaattg gtgctttgcc ataatggctt tattctccgt gccgccacca       240
     gttacagtca tcctgttaga tattgagggt accactaccc caatcacgtt tgtcaaggat       300
     gtactctttc catatgtaaa agaaaacatt aagaaatatc ttcttgagca ctggcaagag       360
     aaggaatgcc aagaggatgt cacccagctt caaaaacagg cagagaaaga ctcccacctt       420
     gatggatttg tgcccattcc ttctggagtt tctgacaata caacagaaca catgatccag       480
     gcagtggtgg ataatgttta ctggcagatg tcctttgatc gaaagaccac tgctcttaaa       540
     cagctgcagg gtcacatgtg gagatcagcc tatattagtg gacagcttaa gggcgaagtc       600
     tatgaagatg ttgtcccatc tattcgacaa tggagggaat taggaatcaa gctgtatatt       660
     tactcttcag ggagtataga tgcacaaaaa ctcttatttg gatactccat tgaaggcgat       720
     ctccttaagc tgttggatgg gcactttgat actaatattg gacataaggt agaaagcaag       780
     agctacagaa acattgcaga caacataggt tgtttaccag aaaacattct ttttctgact       840
     gacgttgtta aggaggctct tgctgctgag aaagcaggtt tgcatgtggc tgtagtagtg       900
     aggcctggca atgctgcatt aactgatgaa gacaaatcca attgctgttg tatcacatca       960
     ttccatcaga ttcattttcc ctcccagaag taattcaaga taaatattaa ataaacatgt      1020
     aatattagta aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      1080
     aaaaaaaaaa aaaaaaaaa                                                   1099
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