EBI Dbfetch

ID   CR855785; SV 2; linear; mRNA; STD; VRT; 1913 BP.
XX
AC   CR855785;
XX
DT   03-NOV-2004 (Rel. 81, Created)
DT   04-OCT-2006 (Rel. 89, Last updated, Version 5)
XX
DE   Xenopus tropicalis finished cDNA, clone TGas070l21
XX
KW   .
XX
OS   Xenopus (Silurana) tropicalis (western clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus;
OC   Silurana.
XX
RN   [1]
RP   1-1913
RA   Amaya E., Ashurst J.L., Bonfield J.K., Croning M.D.R., Chen C-K.,
RA   Davies R.M., Francis M.D., Garrett N., Gilchrist M.J., Grafham D.V.,
RA   McLaren S.R., Papalopulu N., Rogers J., Smith J.C., Taylor R.G., Voigt J.,
RA   Zorn A.M.;
RT   ;
RL   Submitted (04-OCT-2006) to the EMBL/GenBank/DDBJ databases.
RL   Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK. E-mail enquiries:
RL   trop@sanger.ac.uk
XX
CC   Sanger Xenopus tropicalis EST/cDNA project.
CC   
CC   This sequence is from a Xenopus Gene Collection (XGC) library, from a
CC   library constructed by Aaron M. Zorn. cDNA was prepared from RNA extracted
CC   from gastrula embryos. EcoRI-NotI cut cDNA was then ligated into pCS107
CC   with EcoRI at the 5' end and NotI at the 3' end.
CC   Vector: pCS107; Site_1: EcoRI; Site_2: NotI
CC   Host: Escherichia coli XL1-blue
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1913
FT                   /organism="Xenopus (Silurana) tropicalis"
FT                   /mol_type="mRNA"
FT                   /dev_stage="gastrula (stage 10.5-13 mixed)"
FT                   /clone_lib="XGC-gastrula"
FT                   /clone="TGas070l21"
FT                   /db_xref="taxon:8364"
FT   mRNA            1..1893
FT                   /locus_tag="TGas070l21.1-001"
FT                   /product="novel protein similar to ncb5or"
FT   CDS             71..1642
FT                   /locus_tag="TGas070l21.1-001"
FT                   /standard_name="OTTXETP00000004130"
FT                   /product="novel protein similar to ncb5or"
FT                   /note="match: proteins: Q9UHI9"
FT                   /db_xref="GOA:Q28CZ9"
FT                   /db_xref="HSSP:1X3X"
FT                   /db_xref="InterPro:IPR001199"
FT                   /db_xref="InterPro:IPR001433"
FT                   /db_xref="InterPro:IPR001834"
FT                   /db_xref="InterPro:IPR007052"
FT                   /db_xref="InterPro:IPR008333"
FT                   /db_xref="InterPro:IPR008978"
FT                   /db_xref="InterPro:IPR017447"
FT                   /db_xref="InterPro:IPR017927"
FT                   /db_xref="InterPro:IPR017938"
FT                   /db_xref="InterPro:IPR018506"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q28CZ9"
FT                   /protein_id="CAJ83762.1"
FT                   /translation="MLNVPSQSFPAPSSQQRVAAIGRSKVPLKPGRSLMDWIRLTKSGK
FT                   DLTGLKGRLIDVTEEELAQHNKKEDCWICIRGMVYNITPYMEYHPGGEEELMKAAGRDG
FT                   TDLFDQVHRWVNYESMLKECLIGRMAIKHVSISKEVTSVENKMNKHLNGSVASSKMSRT
FT                   SSKESHPWYDWFQTESLVTVAVYTKMKNVCSELVIVDHLENVLRGEIIIGDYSYLLHSE
FT                   LSHPVQKDIEVKVSATAGKIEIKMKKKEPVSWKSLGQPMDGHNSFLKHSQRGLYYRKCR
FT                   LASKTDINYNTKLFCVQLPQGCHLQVPVGHHIYLKMNISGVDIVKPYTPVASCLLPDAQ
FT                   YSTFCNKQCLYLMIKIYPNGSITPHLENLTVGDYISISNPQGTFSSFQIENVMDVFLVA
FT                   AGTGITPMIRLLQHVLTCVSSLRKAKLIFFNKKEEDILWKEQVEELSLADKRFEAQLIL
FT                   SEPSVKWTGYRGQISYSLLNESILRTEEGSKILICICGPNAFVDQGISFLQDLGFSKEE
FT                   VFAFRE"
XX
SQ   Sequence 1913 BP; 614 A; 349 C; 406 G; 544 T; 0 other;
     ttttgactcg ccagttcctt gctgacctcg gcaagtcgca ctttcggttc tttcctaact        60
     tcttatcagg atgctgaacg tcccgtccca gtcattccct gcccccagct cccagcagag       120
     ggttgccgca attgggagaa gcaaggtacc gttgaagcct ggcaggagtc ttatggattg       180
     gatccgacta acaaagagtg gaaaagattt gacggggctg aagggaagac taattgacgt       240
     gactgaagaa gaacttgcac agcataataa gaaagaggac tgttggatct gcattagagg       300
     aatggtgtat aatattactc catacatgga gtatcatcct ggaggagaag aggagttaat       360
     gaaagcagca ggcagagacg gcactgatct ttttgatcag gttcatcgtt gggtcaacta       420
     tgaatccatg ttgaaagaat gtctaatcgg aagaatggcc ataaaacatg tttctatatc       480
     caaagaggta acttctgtgg aaaataaaat gaataaacat ttaaatgggt ctgttgcttc       540
     tagcaaaatg tcacgaacca gtagcaaaga atctcatcct tggtatgatt ggttccagac       600
     agaatccttg gttactgttg ctgtctacac caagatgaag aacgtttgct cagagttggt       660
     tatcgttgat cacctagaaa atgtactaag aggagagatc attattggag actattcata       720
     tcttttacat tctgagctaa gtcacccagt gcagaaagac attgaggtga aggttagtgc       780
     aacagctggt aaaatagaaa ttaaaatgaa gaagaaagaa cctgtttcct ggaaatcttt       840
     gggacaacct atggatggcc ataactcttt cttgaagcat tcccaaagag gtctttatta       900
     ccgaaagtgc agactggctt ctaaaacaga catcaattac aatacgaagt tattttgtgt       960
     tcaacttcct cagggctgtc atcttcaagt gcctgtggga catcatattt acctcaaaat      1020
     gaatatttca ggtgtggaca tagtgaagcc ttatacacca gtggcaagct gtttattgcc      1080
     ggatgcccaa tactcaactt tttgcaataa acagtgcctg tacctaatga taaaaatata      1140
     tccaaatgga agcattaccc cacatcttga aaacttgaca gtaggtgact atatatccat      1200
     aagcaatccc cagggcacat tcagcagttt ccagattgaa aacgtgatgg atgtcttcct      1260
     tgtagcagcg gggacaggca taacaccaat gattagattg ctgcagcacg ttttaacttg      1320
     tgtttctagt cttagaaaag caaagttgat tttcttcaac aaaaaagaag aggatatttt      1380
     gtggaaagaa caagtggaag aattgagctt ggcagacaaa aggtttgagg ctcagcttat      1440
     tctgtcagag ccaagtgtta aatggactgg atacaggggg caaatatcat attccctact      1500
     caatgaatcc atattaagga ctgaagaagg atcaaaaatt ctcatttgca tttgcgggcc      1560
     aaatgcattt gttgaccaag gaataagctt tctacaggac cttggctttt ccaaagaaga      1620
     agtgtttgct ttcagagagt aaatgttctc cactaaccag cacaatatcg aatatgacca      1680
     actggccaat ggcactggaa ttgtctatgc atttatggtg ctacttcata ttttggtata      1740
     aatgtttttt gcttttattg tccagcatta tactgtaaaa aaaaaaaaac aagaaaatac      1800
     tttatttttt tggctgattt ttgtcagatg tctcagctcc atattactgt ttttggtacc      1860
     tgtcttacag aaatgcattg caaatatata aaatgaaaaa aaaaaaaaaa aaa             1913
//