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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CR848611; SV 2; linear; mRNA; STD; VRT; 867 BP.
XX
AC   CR848611;
XX
DT   12-OCT-2004 (Rel. 81, Created)
DT   04-OCT-2006 (Rel. 89, Last updated, Version 5)
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DE   Xenopus tropicalis finished cDNA, clone TGas067k05
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KW   .
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OS   Xenopus (Silurana) tropicalis (western clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus;
OC   Silurana.
XX
RN   [1]
RP   1-867
RA   Amaya E., Ashurst J.L., Bonfield J.K., Croning M.D.R., Chen C-K.,
RA   Davies R.M., Francis M.D., Garrett N., Gilchrist M.J., Grafham D.V.,
RA   McLaren S.R., Papalopulu N., Rogers J., Smith J.C., Taylor R.G., Voigt J.,
RA   Zorn A.M.;
RT   ;
RL   Submitted (04-OCT-2006) to the EMBL/GenBank/DDBJ databases.
RL   Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK. E-mail enquiries:
RL   trop@sanger.ac.uk
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CC   Sanger Xenopus tropicalis EST/cDNA project.
CC   
CC   This sequence is from a Xenopus Gene Collection (XGC) library, from a
CC   library constructed by Aaron M. Zorn. cDNA was prepared from RNA extracted
CC   from gastrula embryos. EcoRI-NotI cut cDNA was then ligated into pCS107
CC   with EcoRI at the 5' end and NotI at the 3' end.
CC   Vector: pCS107; Site_1: EcoRI; Site_2: NotI
CC   Host: Escherichia coli XL1-blue
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FH   Key             Location/Qualifiers
FH
FT   source          1..867
FT                   /organism="Xenopus (Silurana) tropicalis"
FT                   /mol_type="mRNA"
FT                   /dev_stage="gastrula (stage 10.5-13 mixed)"
FT                   /clone_lib="XGC-gastrula"
FT                   /clone="TGas067k05"
FT                   /db_xref="taxon:8364"
FT   mRNA            1..849
FT                   /locus_tag="TGas067k05.1-001"
FT                   /product="Novel protein containing Phospholipase D Active
FT                   Site motif"
FT   CDS             55..687
FT                   /locus_tag="TGas067k05.1-001"
FT                   /standard_name="OTTXETP00000000354"
FT                   /product="Novel protein containing Phospholipase D Active
FT                   Site motif"
FT                   /note="match: proteins: Q5SWZ9 Q8N2A8 Q8N5Y1"
FT                   /db_xref="GOA:Q28DT3"
FT                   /db_xref="InterPro:IPR001736"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q28DT3"
FT                   /protein_id="CAJ83564.1"
FT                   /translation="MLLWGRWKVAAGLAGLALSLELLLRYMRRRKPIREVLFFPAPVTC
FT                   IEPVLYPMKQCSCPLPHTDSAFSRLLLLLLRAQRSLELCVFTFSCPSLARAVLLLHTRG
FT                   VRVRVITDNDYMAASGSQIGPLRSAGVAVRHDQSSGYMHHKFAVVDGTVVLTGSLNWTV
FT                   QATQTNRENILITDDRVIVKAYQQEFERLWQEYDPASYDFFPEKENK"
XX
SQ   Sequence 867 BP; 208 A; 227 C; 210 G; 222 T; 0 other;
     ccttattgaa aatctgccta tgtccctggg ctccttttgc tcccagctat tgtaatgtta        60
     ctgtgggggc gctggaaggt agcggcgggc ctggcgggcc ttgctctcag cctggagctg       120
     ctgcttcggt acatgaggcg gagaaagccc attcgggagg tgctgttctt cccggcgccg       180
     gtgacctgta ttgagcccgt gttgtatccc atgaagcaat gctcctgtcc cctccctcac       240
     accgacagcg ccttcagccg cctcctcttg ttactcctca gggctcagcg cagcctggag       300
     ctttgtgtct tcactttctc ctgtccctcc ctggcccggg ccgtgctact tctacacacc       360
     aggggagtcc gggttcgtgt catcactgac aatgactaca tggctgccag cggctctcag       420
     attgggcccc tgcggagcgc aggtgttgca gttcgacacg accagtccag tggctatatg       480
     caccacaagt ttgctgttgt tgatgggaca gtggttctca ctggctccct aaactggacc       540
     gttcaagcca cccaaaccaa cagggagaac attctcatca cagatgaccg cgtgatcgtt       600
     aaggcttatc agcaggagtt tgagcgactc tggcaggaat atgatccggc atcatacgac       660
     ttcttccctg agaaagagaa caaataaaag cgaccaagca tctcttcttg caagcaataa       720
     atattggaaa caaaatactt tgctttttaa ttgaaaaatg taaactagtt atataaacat       780
     cagcagtttt actaaaggaa atctgtagct ctgagtcttg ctggccgtga ttaaaaaagg       840
     tttgatttta aaaaaaaaaa aaaaaaa                                           867
//
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