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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CR848531; SV 2; linear; mRNA; STD; VRT; 1688 BP.
XX
AC   CR848531;
XX
DT   12-OCT-2004 (Rel. 81, Created)
DT   04-OCT-2006 (Rel. 89, Last updated, Version 5)
XX
DE   Xenopus tropicalis finished cDNA, clone TEgg012h01
XX
KW   .
XX
OS   Xenopus (Silurana) tropicalis (western clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus;
OC   Silurana.
XX
RN   [1]
RP   1-1688
RA   Amaya E., Ashurst J.L., Bonfield J.K., Croning M.D.R., Chen C-K.,
RA   Davies R.M., Francis M.D., Garrett N., Gilchrist M.J., Grafham D.V.,
RA   McLaren S.R., Papalopulu N., Rogers J., Smith J.C., Taylor R.G., Voigt J.,
RA   Zorn A.M.;
RT   ;
RL   Submitted (04-OCT-2006) to the EMBL/GenBank/DDBJ databases.
RL   Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK. E-mail enquiries:
RL   trop@sanger.ac.uk
XX
CC   Sanger Xenopus tropicalis EST/cDNA project.
CC   
CC   This sequence is from a Xenopus Gene Collection (XGC) library, from a
CC   library constructed by Aaron M. Zorn. cDNA was prepared from RNA extracted
CC   from eggs. EcoRI-NotI cut cDNA was then ligated into pCS107 with EcoRI at
CC   the 5' end and NotI at the 3' end.
CC   Vector: pCS107; Site_1: EcoRI; Site_2: NotI
CC   Host: Escherichia coli XL1-blue
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1688
FT                   /organism="Xenopus (Silurana) tropicalis"
FT                   /mol_type="mRNA"
FT                   /dev_stage="egg"
FT                   /clone_lib="XGC-egg"
FT                   /clone="TEgg012h01"
FT                   /db_xref="taxon:8364"
FT   mRNA            1..1668
FT                   /locus_tag="TEgg012h01.1-001"
FT                   /product="novel protein similar to human clp1"
FT   CDS             75..1388
FT                   /locus_tag="TEgg012h01.1-001"
FT                   /standard_name="OTTXETP00000000878"
FT                   /product="novel protein similar to human clp1"
FT                   /note="match: proteins: Q92989 Q99LI9"
FT                   /db_xref="GOA:Q66JK4"
FT                   /db_xref="InterPro:IPR010655"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q66JK4"
FT                   /protein_id="CAJ83686.1"
FT                   /translation="MSSEDLSAPGPSAPDSSFTGPSTKFELERETELRLEVEGTDPVRV
FT                   ELVSGLAEVFGTELTRNKKYTFPPGSRAAIFTWHGCTVQLWGSPDVAYVSRDTPMLLYL
FT                   NTQVGLEQMRAQAEREGERGPRVLVAGPSDVGKSTLCRLLLNYAVRRGRRPTLVELDVG
FT                   QGSVSVPGTVGALCVERPADVEEGFSAQAPLVYHFGSTTPGTNIKLYNKLTSRLAHVFN
FT                   LRCDSNRRASVSGCLINTCGWVKGSGYQALIHAASAFEVDVVLVLDQERLYNDLLRDLP
FT                   HFVRTLLLPKSGGASERSKECRRESRDQRVREYFYGPRGSLYPHAFEIKFSEVRVYKVG
FT                   APSIPDSCLPLGMSQEDNQLKLVPVTPGRDMAHHLLSVVPLDGGGAEEGIEERSVAGFI
FT                   VITGVDTERQTLTVLSPAPRPLPKCVLLIMDIRFMDLK"
XX
SQ   Sequence 1688 BP; 446 A; 351 C; 421 G; 470 T; 0 other;
     cccgggcaac gagcgagact ctaactgagc tgaggaactt ttaatcggag atttggcact        60
     gcggcctggt gataatgtct tcagaagacc tttctgcacc aggcccatca gctccagata       120
     gctctttcac tggcccatca acaaaatttg agttagaacg tgaaacggaa ctgaggcttg       180
     aggtggaggg cacagatcct gtgcgagtgg aactggtttc agggttggct gaggtatttg       240
     gaacagagct gactcgaaat aagaagtata cttttccccc tggaagccgg gcagcaatat       300
     ttacctggca tggatgcact gtgcagcttt ggggaagccc agatgtggcc tacgtttctc       360
     gggatacacc tatgcttctt tatctgaaca ctcaagttgg gttggagcag atgcgtgcac       420
     aagcagagcg cgaaggagaa cgcggtcccc gggtgcttgt cgcaggaccc tcggatgtag       480
     gcaaatctac cttgtgtcga ctgttattaa attatgctgt gcggagaggc cgcagaccca       540
     cacttgtgga gctcgatgtg ggacagggtt ctgtttctgt ccctggcaca gtgggtgctt       600
     tatgtgtgga gaggccagca gatgtggaag aaggattctc tgctcaggca cctctagtct       660
     accactttgg atccactact cctgggacaa acataaagtt atacaacaag cttacctctc       720
     gtctggcaca cgttttcaat ctccgctgtg attctaatcg ccgtgcatca gtcagtggtt       780
     gccttatcaa cacttgtggt tgggtaaaag gctctggata tcaagcattg attcatgctg       840
     catctgcttt tgaagtagat gtggtgctgg tgctagatca agagcgtctc tataatgacc       900
     tactaagaga tctgccgcac tttgttcgta ctttacttct tcctaaatcg ggaggtgctt       960
     ctgagagatc taaagagtgt agaagagaat ctcgagatca gcgcgtacgg gagtacttct      1020
     atggtccacg tggttcacta taccctcatg cttttgagat caaattctcg gaggtcagag      1080
     tttacaaagt gggagcaccc tcaatcccag actcttgtct ccctctaggt atgtcacagg      1140
     aagacaatca attgaagctt gttcctgtga cacctggcag ggatatggca caccatttat      1200
     taagtgtggt gcctctagat ggagggggtg cagaagaggg gatagaggaa aggagtgtgg      1260
     cagggttcat agtcatcaca ggtgtagata ctgaaagaca gactcttact gtgctctctc      1320
     ctgcccctag accacttcct aagtgtgtgt tacttattat ggatataaga tttatggact      1380
     taaaataaca gtgatagcaa tgctgtatag ccccaggtag ctagcagact tgtttttttg      1440
     atctggtttt gtattactga atgtggggaa aaatataaac ctgtgtttgt tcttccgtgt      1500
     caaacaccga gccacaattt ttaccactgc agttttatgt agttttatgt ttttatatgc      1560
     aaaacatagc agcagcaaaa tctttgtaaa ttattacaag aatattgagg tatcacaggc      1620
     cattttacct atgttttgca taaatccaat aaagggataa tattgaccaa aaaaaaaaaa      1680
     aaaaaaaa                                                               1688
//
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