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EBI DbfetchID CR848038; SV 1; circular; genomic DNA; STD; PRO; 1144377 BP. XX AC CR848038; XX PR Project:355; XX DT 01-APR-2005 (Rel. 83, Created) DT 13-MAY-2009 (Rel. 100, Last updated, Version 7) XX DE Chlamydophila abortus strain S26/3, complete genome. XX KW . XX OS Chlamydophila abortus S26/3 OC Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydophila. XX RN [2] RP 1-1144377 RA Thomson N.R.; RT ; RL Submitted (19-OCT-2004) to the EMBL/GenBank/DDBJ databases. RL Submitted on behalf of the Pathogen Sequencing Unit, Sanger Institute, RL Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, E-mail: RL nrt@sanger.ac.uk XX RN [3] RA Thomson N.R., Yeats C., Bell K., Holden M.T.G., Bentley S.D., RA Livingstone M., Cerdeno-Tarraga A.M., Harris B., Doggett J., Ormond D., RA Mungal K., Clarke K., Feltwell T., Hance Z., Sanders M., Quail M.A., RA Price C., Parkhill J., Longbottom D.; RT "The Chlamydophila abortus genome sequence reveals an array of variable RT proteins that contribute to interspecies variation"; RL Genome Res. 15(5):629-640(2005). XX DR GR; CR848038_GR. DR RFAM; RF01118; PK-G12rRNA. DR SILVA-LSU; CR848038. DR SILVA-SSU; CR848038. DR Sample; ERS000044. XX FH Key Location/Qualifiers FH FT source 1..1144377 FT /organism="Chlamydophila abortus S26/3" FT /strain="S26/3" FT /mol_type="genomic DNA" FT /db_xref="taxon:218497" FT CDS 148..1143 FT /transl_table=11 FT /gene="hemB" FT /locus_tag="CAB001" FT /product="putative delta-aminolevulinic acid dehydratase" FT /EC_number="4.2.1.24" FT /note="Similar to Chlorobium vibrioforme FT delta-aminolevulinic acid dehydratase HemB SWALL:HEM2_CHLVI FT (SWALL:Q59334) (328 aa) fasta scores: E(): 4.6e-58, 48.08% FT id in 314 aa, and to Chlamydia pneumoniae FT delta-aminolevulinic acid dehydratase cpn0744 or cp0001 FT SWALL:HEM2_CHLPN (SWALL:Q9Z7G1) (332 aa) fasta scores: E(): FT 6.6e-102, 76.07% id in 326 aa" FT /db_xref="GOA:Q5L7A9" FT /db_xref="InterPro:IPR013785" FT /db_xref="UniProtKB/TrEMBL:Q5L7A9" FT /protein_id="CAH63459.1" FT /translation="MSSLALSRRPRRNRRSEAIRDLVSETALLPQDFICPFFVKEGKNI FT REEIESLTGVYRWSIDLLLKEIERLCSLGLRAVILFPVIPSHLKDAYGSYSSNPKNILC FT KSIYEVKKAFPNLCVISDIALDPYTTHGHDGIVDRGEVLNDESVRIFGNIATLHAEMGA FT DVVAPSDMMDGRVAHIRSKLDQAGWTQTLILSYSVKYASALYHPFRDALGSHLQSGDKR FT NYQMNPTNVLEALLECSLDEQEGADMLMIKPAGFYLDVLHRVKALTMLPLAAYQVSGEY FT AMIAAASTLGWLDREKIVYESLIAIKRAGADMIISYATPLILEMIASSRI" FT misc_feature 148..1128 FT /note="Pfam match to entry PF00490 ALAD, FT Delta-aminolevulinic acid dehydratase , score 551.8, FT E-value 2.9e-163" FT misc_feature 880..918 FT /note="PS00169 Delta-aminolevulinic acid dehydratase active FT site." FT CDS complement(1159..2577) FT /transl_table=11 FT /locus_tag="CAB002" FT /product="putative cation translocating reductase subunit" FT /note="Similar to Haemophilus influenzae Na+-translocating FT NADH-quinone reductase NqrA SWALL:NQRA_HAEIN (SWALL:P43955) FT (447 aa) fasta scores: E(): 5.6e-29, 31.31% id in 463 aa, FT and to Chlamydia pneumoniae probable Na+-translocating FT NADH-quinone reductase cpn0743 or cp0002 SWALL:NQRA_CHLPN FT (SWALL:Q9Z7G2) (467 aa) fasta scores: E(): 1.2e-138, 73.54% FT id in 465 aa" FT /db_xref="GOA:Q5L7A8" FT /db_xref="InterPro:IPR008703" FT /db_xref="UniProtKB/TrEMBL:Q5L7A8" FT /protein_id="CAH63460.1" FT /translation="MKIAITRGLDLSLQGSPKESGFLKRIDPVLVSVDLRPYSALTLKL FT KVEQGDVISSGSPIAEYKNFPGVFITSPVSGTVQEIRRGDKRSLLDVVIKKTPRQNLTE FT YSYDLSKLSRTELLEIFKKEGLFALFKQRPFDIPALPTHHPRDVFINLADNRPFTPSTE FT KHLSVFSSREEGFYVFNVGVRAIAKLFGLCPHIISTDRLVIPEKDLKSIAHVHKITGPY FT PSGSPSTHIHYIAPITSEKDIVFTISFQEVLTIGHLFLKGRILNEQVVALAGSGLKPSL FT RRYVITTRGADFQSLLPLDEIASDKVSLISGDPLTGRLCNKEDLPCLGMRDATISVLPN FT PQKRQAFNFLRLGINKPTLTRTYLSGFLKRKHTYMDPDTNLHGETRPIIDTEIYDKVMA FT MKIPVVPLIKSVITKNFELACMLGLLEVCPEDFALPTFTDPSKTEMLTIIKESLKHYAK FT ETGILNPENTADVE" FT CDS complement(2600..3034) FT /transl_table=11 FT /locus_tag="CAB003" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia muridarum hypothetical protein FT Tc0003 SWALL:Y003_CHLMU (SWALL:Q9PLU2) (143 aa) fasta FT scores: E(): 6.7e-35, 74.15% id in 147 aa. Only significant FT database matches are to Chlamydiaceae proteins." FT /db_xref="UniProtKB/TrEMBL:Q5L7A7" FT /protein_id="CAH63461.1" FT /translation="MNSNSAQKIIDSIKQILTLYNIDFDPSFGSALSSDSEVDYEYLLE FT KTQEKIQELDKRSQEILQQTGMTREQMEVFANNPDNFSPEEWLALENIRSSCNEYKKET FT EALISEVTKELGGETPQPNSSNKTKTTSSKKNKKKNWIPL" FT CDS 3147..5300 FT /transl_table=11 FT /locus_tag="CAB004" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae transcription FT elongation factor cpn0741 or cp0004 SWALL:GREA_CHLPN FT (SWALL:Q9Z7G4) (722 aa) fasta scores: E(): 4.5e-187, 67.54% FT id in 718 aa. C-terminal region is similar to Rickettsia FT prowazekii transcription elongation factor GreA FT SWALL:GREA_RICPR (SWALL:P27640) (162 aa) fasta scores: E(): FT 6.5e-06, 30.87% id in 149 aa. Only significant full-length FT database matches are to Chlamydiaceae proteins." FT /db_xref="GOA:Q5L7A6" FT /db_xref="InterPro:IPR001437" FT /db_xref="UniProtKB/TrEMBL:Q5L7A6" FT /protein_id="CAH63462.1" FT /translation="MDYLEKLQVLIDEEQPSSFFNLWEEYCFNDVVRGTELVQILEKVR FT HSSLAPLFGKIADTVLPLWERIPEGKEKDQVLRLVLDIQNTNAKPFYDAAMDYVNRKYH FT GRQNFNEALRVVGLRDGREFQYSLSRFDFLMHLKEGNFVFHSGGWGVGEVMSVSFLQQK FT VLIEFEGVMMAKDISFETAFKSLIPLDNDHFLSRRFGDPDGFEAYAKDHPSEVIEILLK FT DLGPKTAKEIKDELVDLVIPEVDWHRWWQATKSKIKKNTRIVSPKTIKDPYRYNPGGDS FT LISQLETRLSQIEETQRKIIEIYQFIRDLHSELKKPENREIILKVLQTLPIEDNQSLEI FT QRDLLLSDFLGEKSNKLDSKFVASLSEEGIITIVNDISIAALQKAFLMLIKKYSPVWEN FT VFMKIFFSTTFPALRELSFKVLKGEESCCQKIKEKLLGFIEHPMMYPEVFVWFFLKFGS FT HDDGLFDPKDKEIERLFLEAAMVFMYYIASTPQKELGKKIYNFLVRERYLVIRNMIEGA FT PLSYLKEILLLSTKCSQFSSSDLSVLQSLAEVVQPDLKKNTVAVKEDILWTTPESFTKM FT KNKLQSLVGKEMVDNAKEIEDARALGDLRENSEYKFALEKRARLQEEIRVLSEEVNRAR FT ILTKDIVFTDTVGVGCKVSLEDEQGNLITYSILGPWDADPDNYILSLKSKLAQEMLNKS FT VGASLQFQGKKYKISRIQSIWDA" FT misc_feature 4836..5054 FT /note="Pfam match to entry PF03449 GreA_GreB_N, Prokaryotic FT transcription elongation factor, GreA/GreB, N-terminal FT domain , score 29.9, E-value 1.9e-06" FT tRNA complement(5306..5378) FT /gene="tRNA-Ala" FT /product="transfer RNA-Ala" FT /note="anticodon GGC, Cove score 76.04" FT CDS 5450..6643 FT /transl_table=11 FT /locus_tag="CAB005" FT /product="putative aromatic amino acid aminotransferase" FT /note="Similar to Chlamydia pneumoniae aromatic amino acid FT aminotransferase TyrB or cpn0740 or cp0005 SWALL:Q9Z7G5 FT (EMBL:AE001655) (395 aa) fasta scores: E(): 3.4e-102, FT 64.81% id in 395 aa, and to Escherichia coli FT aromatic-amino-acid aminotransferase TyrB SWALL:TYRB_ECOLI FT (SWALL:P04693) (397 aa) fasta scores: E(): 7e-52, 36.96% id FT in 395 aa" FT /db_xref="GOA:Q5L7A5" FT /db_xref="InterPro:IPR015421" FT /db_xref="UniProtKB/TrEMBL:Q5L7A5" FT /protein_id="CAH63463.1" FT /translation="MSFFHQLPTFAPDSILGLQKLFLEDEREEKVNLVIGSYEDPNKAY FT GGFSSVRKAQFSLLENEMNKGYLPISGLLSFNQQMESLVFGDDVNPSFVVGAQALGGTG FT ALHLGAKIFAMAHPSAAVYIPEQTWGNHLRIFAQQGLDVLKYPYYSSESKTLVFDEMIS FT VLKSAPKNSLVLLQCCCHNPTGMDLDENMWTRLAELMKERQLLPFFDTAYLGFGLGIEE FT DRKPIKIFIDSGHTVFVAACASKNFSLYGERVGYFAAYSRVVDDLDKISSCLEEKIRGE FT YSSPPRHGAKIVSTILSDASLKTEWLAELDTIRCSLQKTRTRFVQAMRNHIGHSFDFIL FT SQKGFFGYPGFSLEQVLFLRLEKGIYTTSGARFNLNGITDNNIDHVVQSFAEAYQQA" FT misc_feature 5693..6631 FT /note="Pfam match to entry PF00155 aminotran_1_2, FT Aminotransferase class I and II , score 164.4, E-value FT 1.2e-46" FT CDS 6841..7944 FT /transl_table=11 FT /locus_tag="CAB006" FT /product="putative membrane protein" FT /note="Similar to Chlamydia pneumoniae ct 368 hypothetical FT protein cpn0739 or cp0006 SWALL:Q9Z7G6 (EMBL:AE001655) (337 FT aa) fasta scores: E(): 7.4e-82, 59.94% id in 332 aa. CDS is FT extended at the N-terminus in comparison to other Chlamydia FT orthologues. Possible alternative translational start site" FT /db_xref="GOA:Q5L7A4" FT /db_xref="InterPro:IPR007221" FT /db_xref="UniProtKB/TrEMBL:Q5L7A4" FT /protein_id="CAH63464.1" FT /translation="MQSPVVKTKTLSNMREIQHSEEHSAIKTTGSVFYRRHRKNRVYVY FT VVLALSIALFWSLPKPFYENIQKRFVVWYSRVFMHHAEVSPQSCSLQDTENIILKDRIA FT ILEERLQAYEVAYHTPPVFPEILSPYFRKLITSRVIYRDPSHWGSSCWVDVGREHNIQK FT NSSVLSGKVLIGLVDYVGEKQSRIRLITDVGMQPSVIAVRGGIQAWLIKDRIQDLSKQI FT ERLSDAYILEKDKYEKIYQLEELNVSIQCSDENTLLLRGTLSGKGGPLWKDETLTLHGE FT GFCFSDGKGLCVGDLLVTTGLDGVFPPGLLVAEITKVCLPREGACSYKIEAKSLAADLM FT NLSSVLILPAMEFNPNDRPDIFGLLWD" FT misc_feature 6964..7017 FT /note="1 probable transmembrane helix predicted for CAB006 FT by TMHMM2.0 at aa 68-85" FT CDS complement(7904..11041) FT /transl_table=11 FT /locus_tag="CAB007" FT /product="putative UvrD/REP helicase" FT /note="Similar to Chlamydia pneumoniae exodeoxyribonuclease FT V beta chain cpn0738 or cp0007 SWALL:EX5B_CHLPN FT (SWALL:Q9Z7G7) (1050 aa) fasta scores: E(): 0, 59.18% id in FT 1056 aa, and to Salmonella typhimurium exonuclease V, beta FT chain STM2994 SWALL:Q8ZMB6 (EMBL:AE008837) (1181 aa) fasta FT scores: E(): 7.4e-25, 24.65% id in 1160 aa" FT /db_xref="GOA:Q5L7A3" FT /db_xref="InterPro:IPR014017" FT /db_xref="UniProtKB/TrEMBL:Q5L7A3" FT /protein_id="CAH63465.1" FT /translation="MKPFDIFHPQTSIQGKYFLEASAGTGKTFTIEQIVLRALLEGSVS FT HVENILIVTFTNAATNELKLRISENLKQAGAQLKSAITDPEQPLPPYLHHPCDVKLLYM FT QVRNALATIDRMAIFTIHGFCNYVLQQHFPEIQISQKNSALTHSQAVLHHIRKYLSQDL FT WENILFPEQFYLLAARYNSHGKHTSFLTDKLLSSYTAQTFDHLPSKSTTASLLNTWHSS FT IRSKINAIPKEKFLEQALKYTESFRKQPFSITEDLVSFIEHLYAAETSVRLFSFSKIAE FT TFHPKNRLARYQPCHAFSYIEETSWFQYTEQFCNVDTIFNTLLHDVQVYLKNHYTWWLS FT PDESIVTLEDLLHSSQAEEVIPSLRKRFQLILIDEFQDTDRKQWNIFAKLFAHKDFSGS FT LFLIGDPKQSIYEWRNADLVTYLKAKSTFPKTSQLHLINNYRSTPQLMQAINILFCKCS FT PFLEIPGYEPIEYHSLTPQSLEYFDNTEHAPIHFFSYDNVLDQAAWISQTAAHLQATHG FT IPFGRMAILVSDSAQAFDLITHCSIPVSFFKNKSIFHLTETYLLTLAWLEAIFYPENYE FT KIQRVLLSSLFRHDLNDVLEKKEHYSSYFFSLRSYIFDHGLLATFYHFMTLHGEALLKT FT PQGDLTFQEMERLCAYLGTISSQPQHQLLYLQYFSETGRWEENLSFSSYSEDTEILKIT FT TIHASKGLEYDIVFCPGLDKSKKNKSSSEWIREMYVACTRAKKQLFIPFQTSLSTRRNT FT ALTNYVNQDGSHASILDLAKNLSKEHPSLFSLSTTNTQDRSTWPIYHITPPATFALSSY FT PTKQIFSFSSVKTMLDNEVLLDSDMEISSISSALPRGRKTGILIHKILENISPNFKIPM FT SKIFTTVLHFVKNTHLEGYEEIISEKLFSTISSPLSFTSASFALKDICPDKILSEEAFL FT FSNKDQLWQGAIDLFFEHQGKYYIIDWKTSFLGETSSKYSQENLFSYIKEHNLDYQGAI FT YIHAAKRFLQQFDITSDVEMGFVFIRGTDSSGNGFFCLPNYKTSNPTINQKYPVYH" FT misc_feature complement(9089..11038) FT /note="Pfam match to entry PF00580 UvrD-helicase, UvrD/REP FT helicase , score 361.3, E-value 6.5e-106" FT misc_feature complement(10958..10981) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(11028..14096) FT /transl_table=11 FT /locus_tag="CAB008" FT /product="conserved hypothetical protein" FT /note="Similar to many proposed exodeoxyribonuclease V FT proteins including: Chlamydia pneumoniae FT exodeoxyribonuclease V, gamma subunit cpn0737 SWALL:Q9Z7G8 FT (EMBL:AE001655) (1024 aa) fasta scores: E(): 4.1e-215, FT 52.87% id in 1027 aa" FT /db_xref="GOA:Q5L7A2" FT /db_xref="InterPro:IPR006697" FT /db_xref="UniProtKB/TrEMBL:Q5L7A2" FT /protein_id="CAH63466.1" FT /translation="MNATKHSQAIFSNSPIHLLAKLAEDLFSTYQQPFTKRWILVANTE FT IGHWLRRELTNATSNHIFMGSTIFSSSDSLIKHLFTEVCHEKPLIPDYITLPLFIHELL FT KTSAATPNILQNPSFLSEPSYSSTKHLAAIFKKFYTFSQAPSENNRYHKDLFSQLEKHF FT MPMGKVFASILSSVKVKKQNRSLHIFGYSHLPRHFATFFTKLSNFFPVYFYCFSPSREY FT FGDLLSDKSIDFLWRQLIDQPNRDAWQHYVLTDRQALLANLSHKSQASQNFFLDKEIHY FT SEVFIPPQETTSLGVVQSNLFHLKPSSHENIADKKQTITISKALSPSREVQEVFSKISI FT LLHQGVRPEEIFILSSQLEIYEVYLKAVFSPHLPLYCCNNTSSHAEDLKEKLLLLSSIL FT QTQGNLYRLLQLLTHPQLQNPIDPSKTPYLLNKLSSEWEKLYKGDGTHLQHLGDNILHD FT YPFVEECGKVSQVELWERILPLLYDLQKFLDLYASTTIKSYEEHCNHILSFLESLFILS FT PEELSFITSLRNALFPAFSSSECSLKFFTDFCLDFFSRFCANSPLYDKPGPYVGTLGDL FT SLIPKGYTFILGANKQKQAIDLLDLVDASTEEELVFSSSEDEENFHFLQVIVSTKYELH FT MSYPSSAHNPALPSAYIHYLQEALQLPVSHLPTKAYIPSLFADTTLVHTSQEHYYKLAQ FT AFCSKKEPLPSLFQTPDTTPNLPDHLSVSQIIKAIFSPLDFFLKSNYQISLRSPTVLES FT REKLFPTKKHILMFWENRLSNTSEDHTYNYLSSFSEAMFTYYDDLIAQWLNTVRLNPLT FT APYTVLFSSSLFHDHLADQDQVLSPVSLTLNNSELYLHGNFSGVFSKGIYLCSIDPTAK FT TRKTVRKTKSILENPADMKNYLKAYIAIAMLQKSGVLSEHAVIRNILSQEVFEDLPLPF FT SHPDNYLHQVLRVYQMMRDFPIPLISSDCWKFLDNAEKFHEAIHTAIEADVNNPSLSTF FT WKFHNRDYKEQFTVSEEQRLLILSLFKGAHETV" FT CDS 14095..15807 FT /transl_table=11 FT /locus_tag="CAB009" FT /product="putative membrane protein" FT /note="Similar to Chlamydia pneumoniae hypothetical protein FT Cp0009 SWALL:Q9K2F0 (EMBL:AE002164) (569 aa) fasta scores: FT E(): 2.3e-147, 67.42% id in 571 aa and to Chlamydia FT pneumoniae efflux protein YgeD or cpn0736 SWALL:Q9Z7G9 FT (EMBL:AE001655) (565 aa) fasta scores: E(): 7.3e-146, FT 67.19% id in 567 aa, and to Chlamydia trachomatis efflux FT protein YgeD or ct641 SWALL:O84647 (EMBL:AE001334) (559 aa) FT fasta scores: E(): 4.4e-130, 60.46% id in 564 aa" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/TrEMBL:Q5L7A1" FT /protein_id="CAH63467.1" FT /translation="MDISIQKKSFRALVITHFLTILNDNLYKFLLVFFLLEGKSLTENA FT KILSYVSLCFALPFLLLAPLAGSLSDRYQKRNIILATRLIEIVCTSLGLYFFYIHSVVG FT GYIVLLLMASHTAIFGPAKMGILPEMLPLDYLSRANGIMTAVTYTGSILGSCFAPLLVD FT LTKNLPVNCYVLSTSFCVVSSIISTFVSLGICSSNFKNRSQKITYVSFKDLWEIFKDTR FT HVHYLTLSIFLVALFLLVGAYVQVEIIPFVEFTLGYPKHYGGYLFPIVALGVGVGSYMT FT GWISGKDIKLGYVPVMTLGLGLAFMGLYAVSCSLVGVMFFLLLLGFLGGVYQVPLHAYI FT QYASPEHKRGQILAVNNFLDFVGVLIAAAIVRILGSSLSLPPETSFLYMGVIIFCLGLW FT ILWLWKELVYRLILSAVLIKQLGNYLKLPKSLIPVCYLVPTHSYREVRRVLAMLPKTLR FT TTVVILDQKLQPGWTTRLISYCVPTVICDLNETSDRSMKEAWAVLQAKRLHTLLKKQPD FT LCVICLGKKDNIEIFSQVLLEQGISMRNIHLTSKKVSYRRNRYSLSLNQADET" FT misc_feature join(14131..14199,14236..14304,14365..14433,14611..14679, FT 14773..14841,14884..14952,14965..15033,15046..15114, FT 15151..15219,15247..15306) FT /note="10 probable transmembrane helices predicted for FT CAB009 by TMHMM2.0 at aa 17-39, 52-74, 95-117, 177-199, FT 231-253, 268-290, 295-317, 322-344, 357-379 and 389-408" FT CDS complement(15832..16812) FT /transl_table=11 FT /locus_tag="CAB010" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia trachomatis hypothetical FT protein Ct627 ct627 SWALL:Y627_CHLTR (SWALL:O84632) (327 FT aa) fasta scores: E(): 3.1e-105, 80% id in 325 aa, and to FT Chlamydia muridarum hypothetical protein Tc0916 tc0916 FT SWALL:Y916_CHLMU (SWALL:Q9PJB6) (328 aa) fasta scores: E(): FT 7.7e-103, 77.84% id in 325 aa, and to Chlamydia pneumoniae FT hypothetical protein cpn0734 or cp0012 or cpj0734 FT SWALL:Y734_CHLPN (SWALL:Q9Z7H1) (324 aa) fasta scores: E(): FT 5.8e-106, 78.15% id in 325 aa." FT /db_xref="InterPro:IPR001763" FT /db_xref="UniProtKB/Swiss-Prot:Q5L7A0" FT /protein_id="CAH63468.1" FT /translation="MKKNYYALAYYYLTRVDNPQQEIALHKELFKDLDVSCRIYISEQG FT INGQFSGYQPDAEYYMNWLRQRPGFSNVKFKIHHIEENIFPRVTVKYRKELVALGCDVD FT LSNQGKHISPQEWHEKLEENRCLVLDVRNNYEWKIGHFENAVLPDIRTFREFPDYAEQL FT SKEHDPATTPVMMYCTGGIRCELYSSLLLEKGFKEVYQLDGGVIAYGQAVGTGKWRGKL FT FVFDDRLAVPIDEADTDVPPIASCSHCETPCDTYYNCANTDCNNLFICCKECIHSTKGC FT CSQECSQAPRIRSFAPCRGNKPFRRMHLCEVTKEKEEAASSCCLH" FT misc_feature complement(16177..16476) FT /note="Pfam match to entry PF00581 Rhodanese, FT Rhodanese-like domain , score 53.3, E-value 3.5e-13" FT CDS 17032..17661 FT /transl_table=11 FT /locus_tag="CAB011" FT /product="putative 30s ribosomal protein s4" FT /note="Similar to Chlamydia muridarum 30S ribosomal protein FT s4 tc0915 SWALL:RS4_CHLMU (SWALL:Q9PJB7) (209 aa) fasta FT scores: E(): 7.9e-72, 83.73% id in 209 aa, and to Bacillus FT subtilis 30S ribosomal protein s4 RpsD SWALL:RS4_BACSU FT (SWALL:P21466) (199 aa) fasta scores: E(): 7.6e-25, 39.32% FT id in 206 aa" FT /db_xref="GOA:Q5L799" FT /db_xref="InterPro:IPR002942" FT /db_xref="UniProtKB/Swiss-Prot:Q5L799" FT /protein_id="CAH63469.1" FT /translation="MARYCGPKNRIARRFGANIFGRSRNPLFKKPHPPGQHGMQRKKKS FT DYGLQLEEKQKLKACYGMILEKQLVKAFKEVVNKQGSVTKMFLERFECRLDNMVYRMGF FT AKTIFAAQQLVAHGHVLVNGKKVDRRSFFLRPGMQVSLREKSRKLQSVKESLENKDESS FT FPSYISVDKSNFKGELLISPEQDQIEAQLPLPVDVSVVCEFLSHRT" FT misc_feature 17032..17307 FT /note="Pfam match to entry PF00163 Ribosomal_S4, Ribosomal FT protein S4/S9 N-terminal domain , score 73.5, E-value FT 2.9e-19" FT misc_feature 17308..17451 FT /note="Pfam match to entry PF01479 S4, S4 domain , score FT 75.0, E-value 1e-19" FT CDS complement(17729..18598) FT /transl_table=11 FT /locus_tag="CAB012" FT /product="putative endonuclease IV" FT /EC_number="3.1.21.2" FT /note="Similar to Chlamydia pneumoniae probable FT endonuclease IV cpn0732 or cp0014 SWALL:END4_CHLPN FT (SWALL:Q9Z7H3) (293 aa) fasta scores: E(): 3.3e-91, 74.04% FT id in 289 aa, and to Escherichia coli, and Escherichia coli FT O157:H7 endonuclease IV Nfo SWALL:END4_ECOLI (SWALL:P12638) FT (285 aa) fasta scores: E(): 1.2e-42, 43.21% id in 280 aa" FT /db_xref="GOA:Q5L798" FT /db_xref="InterPro:IPR012307" FT /db_xref="UniProtKB/Swiss-Prot:Q5L798" FT /protein_id="CAH63470.1" FT /translation="MQVFPPPQVPLLGAHTSTSGGLQNAIYEGQEIGASTVQMFTANQR FT QWRRRPLTDDLINSFKTALEETSLSYIMSHAGYLINPGAPNPEILEKSRICIQQEIQDC FT LSLGITFVNFHPGAAVNDTKEACLDRIVSSFSLVEPLFEDSPPLVVLFETTAGQGTLVG FT STFEELGYLIDKLKHKIPVGVCIDTCHIFASGYDITSPGSWKQVLKNFDDAIGLSYLRA FT FHLNDSMFPLGKHKDRHAPLGEGDIGMESFKFLMTDELTRMIPKYLETPGGPDLWTKEI FT RQLKSFQK" FT misc_feature complement(17732..18553) FT /note="Pfam match to entry PF01261 AP_endonuc_2, AP FT endonuclease family 2 , score 318.5, E-value 5.1e-93" FT misc_feature complement(18029..18052) FT /note="PS00730 AP endonucleases family 2 signature 2." FT CDS 18664..20307 FT /transl_table=11 FT /locus_tag="CAB013" FT /product="putative membrane protein" FT /note="Similar to Chlamydia muridarum virulence factor MviN FT homologue or tc0913 SWALL:MVIN_CHLMU (SWALL:Q9PJB9) (536 FT aa) fasta scores: E(): 1.6e-153, 72.6% id in 533 aa. The FT Chlamydia trachomatis orthologue of this gene is expressed FT during natural infection." FT /db_xref="GOA:Q5L797" FT /db_xref="InterPro:IPR004268" FT /db_xref="UniProtKB/TrEMBL:Q5L797" FT /protein_id="CAH63471.1" FT /translation="MNKKDGQGSVASSLFNLLSGTFFSRVTGMLREIVMAAYFGADPLV FT AAFWLAFRTIFFLRKILGGPVLGLAFIPHFEFLRAQDTSRAAFFFKSFSRFFCYNACAF FT TLIIEIGLGFWLYHAQGNLADALLLTMILLPSGIFLMMYTVNSALLHCEKRFLSVGLAP FT AVVNVLWILTVFLARHSDPRQRIIGLSVVLVIGFVLEWSVTLPGVNKFLGTATTPPKER FT DSIKALIAPLSLGLLSMGVFQINLLTDMCLARYIHEVGPLYLMYSIRIQQLPVHLFGLG FT VFTVLLPSISRCVQEDNNEAGYELMKFALNLTVSVMVIMTVGLLLLALPGVRVLYEHGL FT FPTSAVHAIVQVLRGYSGSIIPMALIPLISVLFYAQRHYTIPLVIGIFAAIANMVLNVI FT FGCWLIKHVSGLAYATSLVSWVQLYFLWQCASKKHLAYSGLMWITFKRSIKVVGVTSLA FT FVVTLGTNILTHTTYVVFLEPYTPLAWSLSSFVAQSAAFFSESVIFLAFLFGFAKLLRV FT EDLVNLTSFQYWKGRRSSLLSSSVVQDSQN" FT misc_feature join(18760..18819,18949..19017,19045..19113,19132..19191, FT 19219..19287,19348..19407,19465..19533,19591..19659, FT 19717..19785,19804..19872,19885..19944,20005..20073, FT 20131..20199) FT /note="13 probable transmembrane helices predicted for FT CAB013 by TMHMM2.0 at aa 33-52, 96-118, 128-150, 157-176, FT 186-208, 229-248, 268-290, 310-332, 352-374, 381-403, FT 408-427, 448-470 and 490-512" FT misc_feature 18766..20121 FT /note="Pfam match to entry PF03023 MVIN, Virulence factor FT MVIN , score 547.7, E-value 5.3e-162" FT CDS 20414..21700 FT /transl_table=11 FT /locus_tag="CAB014" FT /product="conserved putative outer membrane protein" FT /note="Similar to Chlamydia trachomatis lorf2 SWALL:Q46379 FT (EMBL:U50732) (182 aa) fasta scores: E(): 4.8e-33, 56.72% FT id in 171 aa. In C. trachomatis lorf2 is expressed during FT natural infection.In C. pneumoniae the protein encoded by FT the homologue of this gene is a species specific epitope." FT /db_xref="UniProtKB/TrEMBL:Q5L796" FT /protein_id="CAH63472.1" FT /translation="MKKYIYPWLVCLTLSTIVSQGFANTPSSMQRTNNSPTLMSLEDVK FT AYLDTRGFVETRKRGGVLRLAGDVRAKWIHAREDIKTPPTQPDKYKPLPVNRYRSEFKL FT YVDYNADKTWLTSEMSWAAIAGGESSAAGMDIDRAFLGYRFYRDPQTHTNIFTEVGRSS FT LGSIFESEVQFNSNFDGVHLYAARRLSERFPYNVIIHGGPFVVNMTKKHYAWVVEGIVN FT KLPGNFSVKCSVIDWNSFSPTEAPDPAKTAAGPVAANLKYKYCVWQWLVGKYSDLPWFH FT GKTKPLYVYGAYLINTLAKATATTLNEKQNKAWFVGGTLGRLRKAGDWSATIRYEYVEA FT LAVPEIDVSGIGRGNQLKYWFAQAIAGNYDPKEANGFTNYKGASYLFMYGITDSLSFRA FT YGAYSRPADSRLGSDFTYRKFDLGLISAF" FT misc_feature 20414..20482 FT /note="Signal peptide predicted for CAB014 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.981 between residues 23 and 24" FT misc_feature 21554..21577 FT /note="PS00030 Eukaryotic putative RNA-binding region RNP-1 FT signature." FT CDS 21806..23725 FT /transl_table=11 FT /locus_tag="CAB015" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae Chlpn 76 kDa FT homolog_1 cpn0728 or cpj0728 or cp0018 SWALL:Q9Z7H7 FT (EMBL:AE001654) (651 aa) fasta scores: E(): 1.3e-66, 43.43% FT id in 663 aa, and to Chlamydia pneumoniae 76 kDa protein FT SWALL:Q46166 (EMBL:L23921) (715 aa) fasta scores: E(): FT 2.5e-28, 36.44% id in 461 aa. Similar to CAB014. Only FT significant full-length database matches are to FT Chlamydiaceae proteins." FT /db_xref="UniProtKB/TrEMBL:Q5L795" FT /protein_id="CAH63473.1" FT /translation="MVNPVGPIDESKNIAPADLSTLGMQASAANRSAEAESIAEVEGKN FT GSPRPSVNTLGRLSFLSSARNALINFFNKISALFTGKSVPKDFEEAKTQASNAQNALKT FT AKTFDEFKTALQQLQDAIKYMEQFAETDEQKTEVATLKAALAEKQPIIDTINKLGGILE FT ENEKLLEAIKTTSSIDQITGVAGQVEVNKAAAAALIEELKKLGVTADSYPVIGDTETKI FT NTSSTEITKVAEAINSAYTAGKNSTTAVGQAQANNSPANIEASKNTIKEAKSTIDAALG FT LAPDSPIVKAAQKEQQKAVKDIDKIKPSGGSDVPIGGPGAPGSVGTSQNRGTTVGEARI FT SMLLADVDNETAAIIMQGFRNMIDNFHTQNPDITAPLEEVLAQVTDLTTQANPADAEAT FT TQLQEIQQTLQEALQGISGEEGLTNALGAITTAASISTGAPIASANQGGSAVKQLYKTS FT SASASSKSYVDTLSAGYGAYQSLNDVYSRSSAANREVLDRTSTPALTRTVSRTETQPRD FT NDTAAQRFARTIAGNSHTLGDVYASVNVLQTLLGVLQSNPQANEDEIKQKLTSAITKAP FT QSGYPYVQLSNDATQKFIAKLEDEFARGSKRLAEAKEAAFEKQPLFIQQVLVNVASLFS FT GYLQ" FT CDS complement(23916..26516) FT /transl_table=11 FT /locus_tag="CAB016" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae hypothetical protein FT cpn0727 or cp0019 SWALL:Q9Z7H8 (EMBL:AE001654) (872 aa) FT fasta scores: E(): 5.7e-136, 47.36% id in 874 aa, and to FT Chlamydia muridarum hypothetical protein Tc0909 FT SWALL:Q9PJC2 (EMBL:AE002357) (875 aa) fasta scores: E(): FT 1.2e-116, 41.88% id in 881 aa, and to Chlamydia trachomatis FT hypothetical protein Ct619 SWALL:O84624 (EMBL:AE001332) FT (877 aa) fasta scores: E(): 1.3e-103, 42.45% id in 881 aa. FT Only significant full-length database matches are to FT Chlamydiaceae proteins." FT /db_xref="InterPro:IPR007606" FT /db_xref="UniProtKB/TrEMBL:Q5L794" FT /protein_id="CAH63474.1" FT /translation="MSSFYIQNRPKTVSGDGLFNIKLDHKFSNFNPKAQPAIDIETLNS FT GLYALKRLASIIEAGNVQASMLLNPNNTIFPSPPIRPTSRSVKPLGSAQSTAEAIAGIQ FT SATAVALVPLILDGLQTFIDSTSEVNLAQISSIVLAIALITPLKGKPSLSSEEQQKVFN FT NCYEPQKNEILKQIQKEQATEIQKGKDALSEKLTSAGATEEEIEKALKDYENKFTSDFF FT DAHVEKQYMTYRSTIGGATSKMMSDIKALEIPIPQPTKDNIHNVNGMLMLHTIFNGLTD FT AVNKEPALGSEEEVIKTQLVLSGYLSKESLTDEELKLIYTASQLPSKTTLDTYLKPRDA FT AIYREGITAAYQSAVQNLHSVRSDIENEKQTLENQLATFQQASSCFTSWVNGSKTITGA FT KEYTSEIVTAAMEASAGLNSLSQMQGNLQDSEKAIFNNHVPKYLAENISNDTNVAKFIA FT KIDAFQTISEYTLNNAESSSVGVKSNLQNKAEAIKNNPFYSQVSSYIANIANNGLTNYI FT QTSNKYQIPQFNDFVQNELKPVTSSSNGFSDRAATVLQNFKTAADAHVKQLQQQIADLE FT KKYTDLNPADASFTAERKIAVESWLNSESLGSAFIYLILNSQLPKQSAFLNPLIEEINF FT NNLAANAINDLLKITNHFSTTSVYYNLSSYLIQSKEGENLFCGDYFETCLALSREKEYI FT ARDTDRCRRAQALVNALLDKIKKLPGISSSQQSEMLDATSNYMYALSITFNQLNVLNAL FT LSNLKITPEKDKENAYKKTVFKIMGPKDWIPTLASLEGFISNGFPNSTPTGGLGPLFTQ FT IQSDQQNYTTQGQTQQLNLQNQMTNVQQEWTLVSTSMQVFNRILSQLVGEIYPN" FT CDS 26660..29317 FT /transl_table=11 FT /locus_tag="CAB017" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae hypothetical protein FT Cp0020 SWALL:Q9K2E9 (EMBL:AE002166) (812 aa) fasta scores: FT E(): 2e-138, 53.9% id in 846 aa. Only significant FT full-length database matches are to Chlamydiaceae FT proteins." FT /db_xref="InterPro:IPR007606" FT /db_xref="UniProtKB/TrEMBL:Q5L793" FT /protein_id="CAH63475.1" FT /translation="MLILLKIKVNKTVFRMDIINSYSVSANYKKLPILPCSDSIQKRHQ FT LLESVFHYEKTEFERYVVQRLICILDQKADEKYRQLIDKLHKFEIEDRVIPKENRVSAV FT HRKPLSDLHAPIAVVATTSAVGSSDSLPTEDPFYNATKQQWAHNLLGEIKNVVDKIVGA FT VVRLAGKPTLLPRDGSVRSSIEKVEKEPEKPSQEELDKAALLKIQTEVQRLFDLGTNLT FT NADFESLYRLSKQIFDTVQTSTLFMGGQKTDFINELSAEYGNADQLAQVFADGRIEGLK FT DVLNVVKRKLTEEEYSIFSEVEKALASLQTSVHTYDQEKFDLIDQIGDELADTINASAL FT SRNDKIDLCAQISYLYKDQVSAVDSFNVVVDATIFVNSHQEAIFDQISNLVSSLMGVFA FT PINLGQVTTEISSAAIAGALQAVRAINSRFNDLTDAQQKLVNDAFKTLTTFKAPSYIGA FT IWAYFVASTVLATNTTASMENIGAVIREAAKEMGSSKLDIASSIKTTMENIVSANGQFK FT PGNTDNGQEETYTIYSQQNGSGVKINAQLLNRGNVGFLPKITVAANAHAESTARAYFAF FT KGLAGVQIAQLQSKIDESRGQLKDYQALKAELYKDQLYAQSNELQAMALPSAVASVLID FT RYMPKEVGFLNGIYDQLYYSNLGSSVGNAMIDVISEYVNAATYFNFASYVGQQPAVGQK FT GKDVFPGTADSARNKLETERKKAAAYLKSTQDAKIVLEEQVKRVTEDSKISNEQRTRII FT DSLNNYRDNLNVISGSLVLLQNYLAPLGVSEGEVAGTFQVTGGEEQWQARLEILEDALV FT SGLSGNAISGGMFPLQATIQSDQQSYADMGQNYQLELQMHLTSMQQEWTVVATSLQVLN FT QMYLSLARSLMGNL" FT CDS 29348..29578 FT /transl_table=11 FT /locus_tag="CAB018" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae ct652.1 hypothetical FT protein cpn0725 or cpj0725 or cp0021 SWALL:Q9Z7I0 FT (EMBL:AE001653) (75 aa) fasta scores: E(): 1.3e-14, 66.66% FT id in 78 aa. Only significant full-length database matches FT are to Chlamydiaceae proteins." FT /db_xref="UniProtKB/TrEMBL:Q5L792" FT /protein_id="CAH63476.1" FT /translation="MIFAPYFLVKGRNRREGVMTTPQMQQELARLEFINDQLRTELEYV FT NTLLCDIGFPEGLTTIKAIAKEVLTDEDLLD" FT CDS complement(29575..30297) FT /transl_table=11 FT /locus_tag="CAB019" FT /product="putative ABC transporter ATP-binding protein" FT /note="Similar to Chlamydia pneumoniae putative ABC FT transporter ATPase cpn0723 or cp0023 SWALL:Q9Z7I2 FT (EMBL:AE001653) (240 aa) fasta scores: E(): 3.4e-78, 92.08% FT id in 240 aa." FT /db_xref="GOA:Q5L791" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/TrEMBL:Q5L791" FT /protein_id="CAH63477.1" FT /translation="MPILSVCNLVKKYNKKPVTNDVSFEVNAGEVVGLLGPNGAGKTTA FT FYLTVGLIRPDSGKIIFKNTDVTKRTMDYRARLGIGYLAQEPTVFKDLTVKENLICILE FT IIYKARKQQSHLLDTLIDDLQLASCINKKAGTLSGGERRRLEIACVLALNPSVLLLDEP FT FANVDPLVIQNVKYLIKILSSRGIGILITDHNAKELLSIADRCYLIIDGKIFFEGSSSQ FT MIANPMVKQHYLGDSFSY" FT misc_feature complement(29662..30213) FT /note="Pfam match to entry PF00005 ABC_tran, ABC FT transporter , score 172.2, E-value 5.7e-49" FT misc_feature complement(29845..29889) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(30169..30192) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(30305..30790) FT /transl_table=11 FT /gene="dsk1" FT /locus_tag="CAB020" FT /product="putative lipoprotein" FT /note="Similar to Chlamydia psittaci protein of unknown FT function Dsk1 SWALL:Q46226 (EMBL:Z50747) (161 aa) fasta FT scores: E(): 5.2e-66, 96.89% id in 161 aa." FT /db_xref="InterPro:IPR010564" FT /db_xref="UniProtKB/TrEMBL:Q5L790" FT /protein_id="CAH63478.1" FT /translation="MTKFLFYGLFCSLAILGIACTTIVAIIKVDSICDVSCMNKHFEKA FT PPFLKIKKLGVHKQITSPERQFFNCHVDKSCMELHFSDANYACQEALSKLSGHIHTQDL FT DKLMTFQGNGGLLNYQDCSLNIYDCRFHVDPIHPDPHAPEERAVGGMKTLSLSLLRK" FT misc_feature complement(30716..30790) FT /note="Signal peptide predicted for CAB020 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.965) with cleavage site FT probability 0.644 between residues 25 and 26" FT misc_feature complement(30731..30763) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(30787..31596) FT /transl_table=11 FT /gene="kdsA" FT /locus_tag="CAB021" FT /product="2-dehydro-3-deoxyphosphooctonate aldolase" FT /EC_number="2.5.1.55" FT /note="Similar to Chlamydia psittaci putative FT 2-dehydro-3-deoxyphosphooctonate aldolase KdsA FT SWALL:KDSA_CHLPS (SWALL:Q46225) (269 aa) fasta scores: E(): FT 5.2e-104, 95.91% id in 269 aa, and to Escherichia coli FT 2-dehydro-3-deoxyphosphooctonate aldolase KdsA FT SWALL:KDSA_ECOLI (SWALL:P17579) (284 aa) fasta scores: E(): FT 1.4e-41, 45.97% id in 261 aa" FT /db_xref="GOA:Q5L789" FT /db_xref="InterPro:IPR006269" FT /db_xref="UniProtKB/Swiss-Prot:Q5L789" FT /protein_id="CAH63479.1" FT /translation="MFSDKMILIAGPCVIEEEETTLEIAAKIQEIVAPYADHIHWIFKS FT SYDKANRSSIHSYRGPGLKEGLRILSKVKQTFGVEILTDVHSPEEARAAAEVCDILQIP FT AFLCRQTDLLVAAAETQAVINIKKGQFLSPWDMQGPVDKVLSTGNSKIILTERGCSFGY FT NNLVSDMRAIAVLSKMGFPVVFDGTHSVQLPGGLKTHSGGQTEFIPTLTRAALAAGAHG FT LFIETHTNPAIAKSDAASMLSLKAFEVLLPVWNQLYQCVRSFEMASV" FT misc_feature complement(30793..31596) FT /note="Pfam match to entry PF00793 DAHP_synth_1, DAHP FT synthetase I family , score 440.1, E-value 1.2e-129" FT tRNA 31825..31897 FT /gene="tRNA-Arg" FT /product="transfer RNA-Arg" FT /note="anticodon TCT, Cove score 84.86" FT CDS complement(32041..32277) FT /transl_table=11 FT /locus_tag="CAB022" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae protein cpn0720 or FT cp0026 or cpj0720 SWALL:Y720_CHLPN (SWALL:Q9Z7I5) (78 aa) FT fasta scores: E(): 1.5e-25, 92.3% id in 78 aa" FT /db_xref="GOA:Q5L788" FT /db_xref="InterPro:IPR004088" FT /db_xref="UniProtKB/TrEMBL:Q5L788" FT /protein_id="CAH63480.1" FT /translation="MKDFLSYIIKNLVDRPEEVHIKEVQGTHTIIYELTVAKPDIGKII FT GKEGRTIKAIRTLLVSVASRNNVKVSLEIMEDK" FT misc_feature complement(32050..32181) FT /note="Pfam match to entry PF00013 KH, KH domain , score FT 21.6, E-value 0.00063" FT CDS complement(32396..33373) FT /transl_table=11 FT /gene="rluD" FT /locus_tag="CAB023" FT /product="putative pseudouridine synthase" FT /note="Similar to Chlamydia pneumoniae predicted FT pseudouridine synthase SfhB or cpn0719 or cp0027 FT SWALL:Q9Z7I6 (EMBL:AE001653) (325 aa) fasta scores: E(): FT 5.4e-88, 70.66% id in 317 aa, and to Escherichia coli FT ribosomal large subunit pseudouridine synthase d RluD or FT SfhB SWALL:RLUD_ECOLI (SWALL:P33643) (326 aa) fasta scores: FT E(): 2.5e-32, 38.59% id in 298 aa" FT /db_xref="GOA:Q5L787" FT /db_xref="InterPro:IPR006225" FT /db_xref="UniProtKB/TrEMBL:Q5L787" FT /protein_id="CAH63481.1" FT /translation="MQSNTPLFFIVNETNRDRLDKFLVSQNPKYSRAFYQQHIVDQRVT FT INEQIQTKVSTQLVPGDTVSITIEEKEEPSELLPEAIPLEKIYEDEMILVINKPRDMVV FT HPAPGHTRGTVVHALLHEIGERLKQEFPEEPWRPGIIHRLDKDTSGLLITAKTRQAKMI FT YSELFATKQLKKSYLAICVGKPSASVIHTKLARHHTKRKEMAVSSTGKEAITRCEVLAY FT NGKFSLVLLHPETGRTHQLRVHMKHLSTPILGDPVYGSASANSCYGLDKQQLHAYSVNF FT IHPQTHKHLNLTTELPRDMKILIIKEFYNSKTVINKQLFESIIK" FT misc_feature complement(32633..33100) FT /note="Pfam match to entry PF00849 PseudoU_synth_2, RNA FT pseudouridylate synthase , score 236.6, E-value 2.2e-68" FT misc_feature complement(33182..33325) FT /note="Pfam match to entry PF01479 S4, S4 domain , score FT 44.4, E-value 1.7e-10" FT CDS complement(33572..33880) FT /transl_table=11 FT /locus_tag="CAB024" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae ct657 hypothetical FT protein cpn0718 or cpj0718 or cp0028 SWALL:Q9Z7I7 FT (EMBL:AE001653) (106 aa) fasta scores: E(): 1.6e-15, 51.54% FT id in 97 aa. Only significant full-length database matches FT are to Chlamydiaceae proteins." FT /db_xref="UniProtKB/TrEMBL:Q5L786" FT /protein_id="CAH63482.1" FT /translation="MGISYFLALPLSEKDLAYFLNSAKRWAPFLNQDLYLSLISYDATA FT YLAKEISSFPCTLEQWQKAVNHVSSLLTHTFLRSSVDSLLFLACRQFTQIELPVLTN" FT CDS complement(33882..34175) FT /transl_table=11 FT /locus_tag="CAB025" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae ct656 hypothetical FT protein cpn0717 or cpj0717 or cp0029 SWALL:Q9Z7I8 FT (EMBL:AE001653) (99 aa) fasta scores: E(): 6.5e-21, 65.3% FT id in 98 aa, and to Chlamydia trachomatis hypothetical FT protein Ct656 ct656 SWALL:O84663 (EMBL:AE001336) (97 aa) FT fasta scores: E(): 7.3e-20, 59.79% id in 97 aa, and to FT Chlamydia muridarum hypothetical protein Tc0027 tc0027 FT SWALL:Q9PLR8 (EMBL:AE002271) (95 aa) fasta scores: E(): FT 1.8e-12, 64.61% id in 65 aa. Only significant full-length FT database matches are to Chlamydiaceae proteins." FT /db_xref="UniProtKB/TrEMBL:Q5L785" FT /protein_id="CAH63483.1" FT /translation="MEPRYINIKKAETQEIAPVKETSTPEYLAPTNTTFEGPVRTLDQL FT RLALIQKMGEEKGKEMYDQFIQSILISSFGNIHKEMDRAQKASKKMRSVYKE" FT CDS complement(34288..35727) FT /transl_table=11 FT /locus_tag="CAB026" FT /product="putative DNA gyrase subunit A or topoisomerase IV FT subunit A" FT /note="Similar to Chlamydia pneumoniae DNA gyrase subunit a FT GyrA_2 SWALL:Q9JSB8 (EMBL:AP002547) (478 aa) fasta scores: FT E(): 2.6e-140, 75.15% id in 479 aa and to Bacillus subtilis FT topoisomerase iv subunit a ParC SWALL:PARC_BACSU FT (SWALL:Q45066) (806 aa) fasta scores: E(): 7e-20, 30.28% id FT in 492 aa." FT /db_xref="GOA:Q5L784" FT /db_xref="InterPro:IPR013758" FT /db_xref="UniProtKB/TrEMBL:Q5L784" FT /protein_id="CAH63484.1" FT /translation="MHDVSELFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFC FT MDDGKMHKVANIAGRTMALHPHGDAPIVEALVVLANKGYLIDMQGNFGNPLTGDPHAAA FT RYIEARLSPLAKEILFNTDLMSFHDSYDGRDKEPDILPAKLPLLLLHGVEGIAVGMTTK FT IFPHNLCELIEAQIAILNNRAFTLLPDFYSGGVMDASEYQDGLGSITMRASIQTVDQKT FT LIIKEICPSTTTETLIRSIENAAKRGVIKIDSIQDFSTDQPHIEIKLPKGVYAKDIIEP FT LFQYTECQVVLTSRPTAIYNNKPVETSISEILKLHTEVLEGYLQKELEILQDELAQEHY FT YKSLEYIFIKYRLYDTVRANLSKLKNTVSQEDLHAAVLTALAPFLSSLPTIPSKQATGQ FT LASLAIKKILCFNENRYTKDLAAIEKKQAAVNKDLSNMKKFTIKYLKGLSAKYGELGKR FT KTQVLSFSKQKKSILKQQTLV" FT misc_feature complement(34369..35661) FT /note="Pfam match to entry PF00521 DNA_topoisoIV, DNA FT gyrase/topoisomerase IV, subunit A , score 159.9, E-value FT 2.8e-45" FT CDS complement(35731..37539) FT /transl_table=11 FT /gene="gyrB_2" FT /locus_tag="CAB027" FT /product="putative DNA gyrase subunit b or topoisomerase IV FT subunit b" FT /note="Similar to Chlamydia pneumoniae DNA gyrase subunit b FT GyrB_2 or cpn0715 or cp0031 SWALL:Q9Z7J0 (EMBL:AE001653) FT (602 aa) fasta scores: E(): 8.7e-184, 78.7% id in 601 aa, FT and to Chlamydia trachomatis topoisomerase iv subunit b FT ParE SWALL:O85120 (EMBL:AF044268) (554 aa) fasta scores: FT E(): 6.2e-156, 72.28% id in 552 aa" FT /db_xref="GOA:Q5L783" FT /db_xref="InterPro:IPR013506" FT /db_xref="UniProtKB/TrEMBL:Q5L783" FT /protein_id="CAH63485.1" FT /translation="MATYTEASVVSLASLEHIRLRAGMYIGRLGDGSQVEDGIYTLFKE FT VVDNAIDEFIMGYGKTLVIFSDDSTITVRDSGRGIPLGKMIECVSKINTGAKYTQDVFH FT FSVGLNGVGLKAVNALSEKFTVRSVRKKKYHYAIFHKGILQDSRQGSTKDPDGTEITFS FT PDPTIFTNFSFNDEFLRKKIHRYTYLHPGLEIIYNNEAFVSQQGLLDLFKEEIPEETLY FT PPLAFHNAELSFLFSHLDTHTERYFSFVNGQETIDGGSHLAAFKEAIVKGINEYFGKNF FT TSNDIREGIVGCIAIKIASPIFESQTKNKLGNTQIRSGIIKEVKSAIIQELKKNKSYAD FT LLLDKIKLNEKTRKNIQFIKQDLKDKQKKLHYKIPQLRDCKFHYNERSLYGEASSIFVT FT EGESASASILSSRNPLTQAVFSLRGKPMNVFSLEEEKVYKNDELFYLATALGITKNSTQ FT HLRYNKIILATDADVDGMHIRNLLITFFLKTFVSVVENHHLFILETPLFKVRYKDTTLY FT CYSDQEKTQAIQKLGKKEAHLEVTRFKGLGEISPKEFKTFIGADMRLTPVTISSSESLE FT SLLQFYMGKNTKERKQFIMDNLITNV" FT misc_feature complement(36049..36159) FT /note="Pfam match to entry PF01751 Toprim, Toprim domain , FT score 18.7, E-value 7.2e-05" FT misc_feature complement(36454..36921) FT /note="Pfam match to entry PF00204 DNA_gyraseB, DNA gyrase FT B , score 92.9, E-value 4.1e-25" FT misc_feature complement(37039..37440) FT /note="Pfam match to entry PF02518 HATPase_c, Histidine FT kinase-, DNA gyrase B-, and HSP90-like ATPase , score 52.2, FT E-value 7.6e-13" FT CDS 38121..39137 FT /transl_table=11 FT /locus_tag="CAB028" FT /product="putative glutamyl-tRNA reductase" FT /EC_number="1.2.1.-" FT /note="Similar to Chlamydia pneumoniae glutamyl-tRNA FT reductase HemA or cpn0714 or cp0032 SWALL:HEM1_CHLPN FT (SWALL:Q9Z7J1) (339 aa) fasta scores: E(): 3.2e-81, 61.42% FT id in 337 aa, and to Bacillus subtilis glutamyl-tRNA FT reductase HemA SWALL:HEM1_BACSU (SWALL:P16618) (455 aa) FT fasta scores: E(): 6.5e-08, 24.56% id in 342 aa." FT /db_xref="GOA:Q5L782" FT /db_xref="InterPro:IPR018214" FT /db_xref="UniProtKB/Swiss-Prot:Q5L782" FT /protein_id="CAH63486.1" FT /translation="MVLGVVGISYREAALKEREAVINILKDFEANSFFSQHFFGDDGSF FT VLLLTCHRAEIYYFSKSNRHIQSKLLSRISSLGARPYCYQGLACFTHLFTVTSGMDSLI FT SGETEIQGQVKRAYIKAKTDRDLPFALHFLFQKALKEGKDFRSQVSLSHPVVTIESVVE FT ETLDLHGKSTKDKLLFIGYSEINRKIAKGLSAKGYRNLIFCSRKNISIPYDTVARSQLS FT FREPYDVIFFGSSESAKDFSGLSLESLASIPSRVIFDFNVPRTFTLAESPKDIICLDMD FT FISERVQKKLQISKQCTNKEKPFLALAARKQWEVYEKKSSHIPSSQVRASRPKLLIL" FT CDS 39246..39389 FT /transl_table=11 FT /locus_tag="CAB029" FT /product="unknown hypothetical protein" FT /note="No significant database matches." FT /db_xref="UniProtKB/TrEMBL:Q5L781" FT /protein_id="CAH63487.1" FT /translation="MITIAIKIIPIFLRSFVLYSEKDEQENEHEIVYKNKKSFLFLKFV FT LA" FT CDS 39486..39887 FT /transl_table=11 FT /locus_tag="CAB030" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae protein cpn0713 or FT cp0033 or cpj0713 SWALL:Y713_CHLPN (SWALL:Q9Z7J2) (130 aa) FT fasta scores: E(): 3.7e-37, 75.78% id in 128 aa. Only FT significant full-length database matches are to FT Chlamydiaceae proteins." FT /db_xref="GOA:Q5L780" FT /db_xref="InterPro:IPR010261" FT /db_xref="UniProtKB/TrEMBL:Q5L780" FT /protein_id="CAH63488.1" FT /translation="MEKLIKNFATYIGITSTLEFDADGAYVLPISDLVKIRVLQNADNE FT IVLNVFLGELPPSSDTNKAYLQMMVANLFGRETGGSALGLDSEGHIVMTRRIPEEVSYE FT DFARYVESFMNFSETWLEDLGLNKAQQGQ" FT CDS 39907..42288 FT /transl_table=11 FT /locus_tag="CAB031" FT /product="putative membrane protein" FT /note="Similar to Chlamydia pneumoniae fha domain cpn0712 FT or cpj0712 or cp0034 SWALL:Q9Z7J3 (EMBL:AE001652) (845 aa) FT fasta scores: E(): 5.3e-126, 62.85% id in 848 aa." FT /db_xref="InterPro:IPR007055" FT /db_xref="UniProtKB/TrEMBL:Q5L779" FT /protein_id="CAH63489.1" FT /translation="MGARLIIDKGPLSGFVLVLEQGTSWSIGKDAASSDIQLEDPKLAN FT TQVVITREDDLYFITNLDTSYPVTVNGKEITEATPIHDADVITFGSNQYSFFTQEFDPD FT DVVYDFDFSSENTTNVSPEPADTKKKTKKNSAPAQDEPKQPSSKQQDSSDTSPTDKDKE FT LAEAFLASAKSEKETSGQKLDMDTLPEAGSKNTTEENGALPNQNQPPLPDSDPAAQDPS FT TKGGQPKEGEPVKDTPTSAEPSEEKEGIAQGQEANPQETQPEDVQGVEQSPNDQEAPKE FT KTDTEEEAEEKLEEEEEQESKKTEKPEVLSPFNVQDLFKFDQGIFPAEIDEIAQKNVSV FT DLSQPARFLLKVLAGANIGAEFHLDTGKSYILGSDPASADIVFNDLSVSHRHAKIIVSN FT DGSIMLEDLGSKNGVIIEGKKIENSSTLSANQVVALGTTLFLLIDHLAPADTIVASFAP FT EDYGLFGRPQDAEEIAQQAAQEEEEKRKRATLPTGSFILTLFIGGLAILFGIGTASLFH FT TKEVIPIENIDYQEDIERVVNAFPTVRYTFNKNNGQLFLIGHVKNSIDKSELLYKMDAL FT SFIKSIDDNVIDDEAVWQEINILLSKKPEFKGVSMHSPQPGEFVITGYLKTEEQAVCLA FT DYLNVHFNYLSLLENKVIIESQMLKAIAGQLLQAGFANIHVAFVNGEVVLTGYVNHEDG FT EKFRSVVQEISTLPGVRLVKNFVVLLPVKEGIIDLNLRYPSRYRVTGYSKYGDVSINVV FT VNGRILTRGDVIDGMTVTSIQPHCIFLEKEGLKYKIEYNK" FT misc_feature 39979..40176 FT /note="Pfam match to entry PF00498 FHA, FHA domain , score FT 41.0, E-value 1.8e-09" FT misc_feature 41014..41214 FT /note="Pfam match to entry PF00498 FHA, FHA domain , score FT 53.5, E-value 3.1e-13" FT misc_feature 41386..41454 FT /note="1 probable transmembrane helix predicted for CAB031 FT by TMHMM2.0 at aa 494-516" FT CDS 42314..42595 FT /transl_table=11 FT /locus_tag="CAB032" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia trachomatis hypothetical FT protein Ct665 SWALL:Y665_CHLTR (SWALL:O84672) (83 aa) fasta FT scores: E(): 2.4e-17, 70.37% id in 81 aa. Only significant FT full-length database matches are to Chlamydiaceae FT proteins." FT /db_xref="UniProtKB/TrEMBL:Q5L778" FT /protein_id="CAH63490.1" FT /translation="MYLGRNTMFNMENTAAKEDRFSHQLFDLEKDMQDLSKAQEIKANV FT QDKVQKLHVSLREGSDKASFEKQQIVLAGYLALQKVLGRINRKNGLTD" FT CDS 42611..42865 FT /transl_table=11 FT /locus_tag="CAB033" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia trachomatis protein Ct666 FT SWALL:Y666_CHLTR (SWALL:O84673) (83 aa) fasta scores: E(): FT 1e-28, 94.04% id in 84 aa. Only significant full-length FT database matches are to predicted Chlamydiaceae proteins." FT /db_xref="UniProtKB/TrEMBL:Q5L777" FT /protein_id="CAH63491.1" FT /translation="MSSGSSCSAFNFNDMLNGVCKYVQGVQQYLTELETSTQGTVDLGT FT MFNLQFRMQILSQYMEAVSNILTAVNTEMITMARAVKGS" FT CDS 42884..43333 FT /transl_table=11 FT /locus_tag="CAB034" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae hypothetical protein FT cpn0709 or cpj0709 or cp0037 SWALL:Q9Z7J6 (EMBL:AE001652) FT (149 aa) fasta scores: E(): 6.5e-47, 79.05% id in 148 aa. FT Only significant full-length database matches are to FT predicted Chlamydiaceae proteins." FT /db_xref="UniProtKB/TrEMBL:Q5L776" FT /protein_id="CAH63492.1" FT /translation="MADLELFKADFALLFEAGMLAIKQGDEESAKKLFQSLQILNPDHY FT GYELGLALIDLHKMEIFAAEERLNALAQKEVDNWSIKSFLSLTHMMIVLHQGSSFEVRR FT ESLENCLKLAGQVLENCEVESTRILAQSVLDWHDSLVAKSGGPLS" FT CDS 43378..44046 FT /transl_table=11 FT /locus_tag="CAB035" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia trachomatis hypothetical FT protein Ct668 SWALL:O84675 (EMBL:AE001337) (223 aa) fasta FT scores: E(): 6.8e-47, 66.81% id in 223 aa, and to Chlamydia FT pneumoniae hypothetical protein cpn0708 or cpj0708 or FT cp0038 SWALL:Q9Z7J7 (EMBL:AE001652) (224 aa) fasta scores: FT E(): 3.6e-46, 67.55% id in 225 aa, and to Chlamydia FT muridarum hypothetical protein Tc0039 SWALL:Q9PLQ6 FT (EMBL:AE002271) (226 aa) fasta scores: E(): 6.9e-44, 63.22% FT id in 223 aa. Only significant full-length database matches FT are to Chlamydiaceae proteins." FT /db_xref="UniProtKB/TrEMBL:Q5L775" FT /protein_id="CAH63493.1" FT /translation="MIDPLKLFPKLDSEKETASIQKPLGTPLASELHKEVPAFSLGTAA FT DSLNKNIEDVKPNPMAMMQDRNSNIIDPELEEALDSEELKEQINNLKERLWDAQSTLQQ FT DQNKLSQEHFEAVSVIIDLINGDLNDIAEHTQQNLQTKKEEEHESVARKMVNWVSSGEE FT VLNRALLYFSDRNGERENLADFLKVQYAVQRATQRAELFASIVGTTVSSIKTIMTTQLG FT " FT CDS 44048..45376 FT /transl_table=11 FT /locus_tag="CAB036" FT /product="putative type III secretion or flagellar-type ATP FT synthase" FT /note="Similar to Chlamydia pneumoniae YopN or YscN or FT cpn0707 or cp0039 SWALL:Q9Z7J8 (EMBL:AE001652) (442 aa) FT fasta scores: E(): 5.8e-152, 95.24% id in 442 aa, and to FT Yersinia enterocolitica probable ATP synthase YscN FT SWALL:YSCN_YEREN (SWALL:P40290) (439 aa) fasta scores: E(): FT 8.4e-81, 55.45% id in 422 aa and to Bacillus subtilis FT flagellum-specific ATP synthase FliI SWALL:FLII_BACSU FT (SWALL:P23445) (440 aa) fasta scores: E(): 1.5e-75, 52.39% FT id in 418 aa." FT /db_xref="GOA:Q5L774" FT /db_xref="InterPro:IPR020003" FT /db_xref="UniProtKB/TrEMBL:Q5L774" FT /protein_id="CAH63494.1" FT /translation="MDELTTDFDTLMSQLNDVHLTTVVGRITEVVGMLIKAVVPNVRVG FT EVCLVKRYGMEPLVTEVVGFTQNFAFLSPLGELTGVSPSSEVIPTGLPLYIRAGNGLLG FT RVLNGLGEPIDSEIKGPLVDVNETYPVFRAPPDPLHREKLRTILSTGVRCIDGMLTVAR FT GQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRS FT VIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEP FT PARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEPVADEVKSILDGHVV FT LSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANEMLIRIGEYR FT RGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEASQQLRAIFR" FT misc_feature 44126..44320 FT /note="Pfam match to entry PF02874 ATP-synt_ab_N, ATP FT synthase alpha/beta family, beta-barrel domain , score FT 38.1, E-value 1.3e-08" FT misc_feature 44327..45148 FT /note="Pfam match to entry PF00006 ATP-synt_ab, ATP FT synthase alpha/beta family, nucleotide-binding domain , FT score 498.1, E-value 4.3e-147" FT misc_feature 44558..44581 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 45101..45130 FT /note="PS00152 ATP synthase alpha and beta subunits FT signature." FT CDS 45397..45915 FT /transl_table=11 FT /locus_tag="CAB037" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae hypothetical protein FT cpn0706 or cpj0706 or cp0040 SWALL:Q9Z7J9 (EMBL:AE001652) FT (168 aa) fasta scores: E(): 1.2e-37, 88.69% id in 168 aa. FT Only significant full-length database matches are to FT predicted Chlamydiaceae proteins. CDS contains coiled coil FT region from residues 22-151." FT /db_xref="InterPro:IPR009929" FT /db_xref="UniProtKB/TrEMBL:Q5L773" FT /protein_id="CAH63495.1" FT /translation="MPKYPLEPVLAIKRDRVDRAEKIVKEQRKLLEIEQEKLREIEAAR FT DKVKNHYMQKIQQLRELLDEGTTSDAVLQRKAYIKVVAVQLAEEEEKVNKQKENVLAAA FT KELEKAEVNLAKRRKEEEKTRLHKEEWMKEALKEEAREIEKEQDEMGQLLYQLRKKKQR FT ESGESSSWN" FT CDS 45906..46751 FT /transl_table=11 FT /locus_tag="CAB038" FT /product="putative membrane protein" FT /note="Similar to Chlamydia pneumoniae protein cpn0705 or FT cp0041 or cpj0705 SWALL:Y705_CHLPN (SWALL:Q9Z7K0) (280 aa) FT fasta scores: E(): 7.2e-51, 57.84% id in 287 aa. Only FT significant database matches are to predicted Chlamydiaceae FT proteins." FT /db_xref="UniProtKB/TrEMBL:Q5L772" FT /protein_id="CAH63496.1" FT /translation="MELNKTSESLYNCKTDRHLIQQEVGPEPKDNRDVKVFSLEGRQQS FT KHDRQDKAVNKGSRQEARGADDKHVEEKTSAVSSKEEEKEEGQSFMAYDNPTAGMAFVD FT IASSVSSEVVVESSTVAVASADLQWVQDVIASTVESMIVADVNGQQLVELVLDAEGNVP FT EVFAGANLTLVQSGTDLSVKFSNFIDEVQLTEAVNLIANNPSQLAGLVEALKNLRLNLT FT EFTVGTSIVQLPTIEEVQTPLHMIAATIHRRDEERDQQGKDQQQQDQEQNQYKVEEARL FT " FT CDS 46764..47879 FT /transl_table=11 FT /locus_tag="CAB039" FT /product="possible flagellar or type III secretion FT protein." FT /note="Similar to Chlamydia pneumoniae flagellar motor FT switch domain/YscQ family FliN or cpn0704 or cp0042 FT SWALL:Q9Z7K1 (EMBL:AE001652) (371 aa) fasta scores: E(): FT 2.7e-93, 63.53% id in 373 aa, and to Chlamydia muridarum FT type III secretion translocase SctQ tc0043 SWALL:Q9PLQ2 FT (EMBL:AE002271) (373 aa) fasta scores: E(): 1.2e-87, 57.75% FT id in 374 aa." FT /db_xref="GOA:Q5L771" FT /db_xref="InterPro:IPR013385" FT /db_xref="UniProtKB/TrEMBL:Q5L771" FT /protein_id="CAH63497.1" FT /translation="MTVAAEPSASWLKSRQDFLSSLVKTEEAVALPPFPKELCQNRLKE FT KFRLEDTNLTIQPRGSLTAAQAVQDFGTHFLVQSFLAQPLTSGTFFFVTSEADLQSFMV FT SVFNDSSLASYFYEKDKLLGFHYYFSAELCKLLQELAWIPSLSVRVVGDARFSTKDLQG FT SYQAVDVNCGLDGKTMRFRLLFPEATCASCQDFLSASNQNFDIHQLDPTPLTMSVEIGY FT CQLTQEEWQQVAHGSFILLDSCLYDPDTEESGGLLTVQGHQFFGGRFIDQTSGEFKITS FT YPSVPQEAPTEETPEALPAAPLPGNYKLVAEASRYSLTVEEFLHLSQGSILNLNGIHPS FT RGVDLILNGAKVGRGEIVSLGDVLGIRVLEV" FT misc_feature 47658..47876 FT /note="Pfam match to entry PF01052 SpoA, Surface FT presentation of antigens (SPOA) protein , score 50.0, FT E-value 3.5e-12" FT CDS 47897..49405 FT /transl_table=11 FT /locus_tag="CAB040" FT /product="putative serine/threonine-protein kinase" FT /note="Similar to Chlamydia pneumoniae FT serine/threonine-protein kinase cpn0703 or cpj0703 or FT cp0043 SWALL:Q9Z7K2 (EMBL:AE001652) (502 aa) fasta scores: FT E(): 3.1e-110, 56.17% id in 502 aa." FT /db_xref="GOA:Q5L770" FT /db_xref="InterPro:IPR008271" FT /db_xref="UniProtKB/TrEMBL:Q5L770" FT /protein_id="CAH63498.1" FT /translation="MDCQSEILLLHQVIGAYHIKKILSKKEGSAVYQGLHSATLQSTAI FT KVLEPPLVADTRRVHNFLKEARIIEQVSHPNIVKLYQYGQCRERLYIAMEYIQGVSLRH FT YILTHQIPLSRAIDIILHIGRAIEYLHSRGILHRDIKPENILMNAQGEIKLIDFGLAVS FT SSTEHASHPSCLGTPAYMSPEQRQGDKVSEKSEIYSLGLIAYELILGNLALGKVILSLI FT PDRVSKILAKALQPSPQDRYGSMKEFMSHLHQYRYSQDLQQDYRNKDHTAQVNEQLYQQ FT RFWLSPAEIVVPDFISASVYEQGYPTHPHVYYEAYMSRDTFRLWFCYSLSGNATLVLTI FT IKTFVSQWGHEDSIRSTMRKIHSELLRIHAPVDTAGMSLVCVTIPKEKKELSWITCGKT FT SFWLKKQGKVPQNFTTSSLGLGKISSLQIQETKVAWEIGDGAVLHTLQADDSMSSLNSP FT LFTELKDRGQTAIFCPIESVQFGILENHDGNLCPSTLISLKRIW" FT misc_feature 47945..48658 FT /note="Pfam match to entry PF00069 pkinase, Protein kinase FT domain , score 164.7, E-value 1e-46" FT misc_feature 48299..48337 FT /note="PS00108 Serine/Threonine protein kinases active-site FT signature." FT CDS 49402..52128 FT /transl_table=11 FT /locus_tag="CAB041" FT /product="putative general secretion protein" FT /note="Similar to many OutD, general secretion protein, FT orthologues that are thought to be involved in the FT recognition of secreted proteins: Chlamydia trachomatis FT putative general secretion protein D or ct674 SWALL:O84681 FT (EMBL:AE001337) (921 aa) fasta scores: E(): 0, 73.52% id in FT 933 aa. Also similar to several Type III secretion system FT proteins." FT /db_xref="GOA:Q5L769" FT /db_xref="InterPro:IPR005644" FT /db_xref="UniProtKB/TrEMBL:Q5L769" FT /protein_id="CAH63499.1" FT /translation="MKIVTSNIGRKILQVINKKKGKIGVLSILLFFDLVLLGVNSQKPA FT TDEPRSRVKNSQTDEKSQIAACPKNIVNKTSAKKSDKQAVVKNFPSNQPRHFKKSTQTF FT SPGFSEGSPFAKPEAKKRLQDNRYTQTTAKKTPRFLSKQEEKTEVTEGKSEEERIWEDK FT RAYAKRAVNAINFSVKKLVEESDKKSSQEEGFKVDHHSGSPNALTKSPDKQPSIDKIAI FT QPEATKEEEEAPALLKGKQITCEDLKDNGYTVNFEDISVLELLQFVSKISGTNFVFDSN FT DLNFNVTIVSHDPTSVDDLSTILLQVLKMHDLKVVEQGNNVLIYRNPRLSKLSTVVTDG FT SAKDNCEAVVVTRVFRLYSVHPTSAVNIIQPLLSHDAIVSASEATRHVIVSDIAGNVEK FT VGELLAALDSPGTSVDMSEYEVRYANPASLVSYCQDVLGAMAEDEAFQIFIQPGTNKIF FT VVSSPRLTNKAIQLLKSLDVPEMAHTLDDVTSPASALGTSGAANPKSLRFFMYKLKYQN FT GAAIAQAIQDIGYNLYVTTAMDEDFINTLNSIQWLDVNNSIVVIGNQTNVDKVVSLLNG FT LDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQGKVAYASGLLSNTGLANPAKSTV FT PPAKPSPGDIPLPTPGQLAGISDMMYASSAFGLGIIGNVLSHKGKSFLTLGGLLSALDQ FT DGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQETGTVTQNIEYEDIGVNLVVA FT STIAPNNVVTLQIEQTISELHSAQGTLTPVTDKTYAATRLQVPDGCFLVMSGHIRDKTT FT KIVTGVPLLNSIPLLRGLFSRTIDQRQKRNIMMFIKPKVISSFEEGTKLTNKEGYRYNW FT EANEGSMQVAPRHAPECQHPPALQVESDFKMLEIEAQ" FT misc_feature 49402..49515 FT /note="Signal peptide predicted for CAB041 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.858) with cleavage site FT probability 0.423 between residues 38 and 39" FT misc_feature 51046..51960 FT /note="Pfam match to entry PF00263 GSPII_III, Bacterial FT type II and III secretion system protein , score 282.3, FT E-value 4e-82" FT tRNA 52289..52361 FT /gene="tRNA-Thr" FT /product="transfer RNA-Thr" FT /note="anticodon CGT, Cove score 76.52" FT CDS complement(52771..53847) FT /transl_table=11 FT /locus_tag="CAB042" FT /product="hypothetical ATP:guanido phosphotransferase" FT /EC_number="2.7.3.-" FT /note="Similar to Chlamydia pneumoniae hypothetical FT ATP:guanido phosphotransferase cpn0701 or cp0045 or cpj0701 FT SWALL:Y701_CHLPN (SWALL:Q9Z7K4) (358 aa) fasta scores: E(): FT 2.6e-98, 66.76% id in 358 aa, and to Chlamydia muridarum FT hypothetical ATP:guanido phosphotransferase Tc0046 FT SWALL:Y046_CHLMU (SWALL:Q9PLP9) (356 aa) fasta scores: E(): FT 3.5e-76, 54.39% id in 353 aa, and to Chlamydia trachomatis FT hypothetical ATP:guanido phosphotransferase Ct675 FT SWALL:Y675_CHLTR (SWALL:O84682) (356 aa) fasta scores: E(): FT 1.4e-73, 54.1% id in 353 aa" FT /db_xref="GOA:Q5L768" FT /db_xref="InterPro:IPR014746" FT /db_xref="UniProtKB/TrEMBL:Q5L768" FT /protein_id="CAH63500.1" FT /translation="MILSNDLLLNFASKKDAPPTNKTWPITTFSLSRNLSIAKFLPCLS FT REKKQEILEVIASHFNHIEGFDEFLVLPLKDAPAWQKEFLIEHFLFPYDLTGNPEGEAL FT IVNRSGNILAAINFRDHLILHAIDFTSEPEKALDQLVRLDSYLNEKLAFAFSPDFGFLT FT TNPRECGTGLKSQSFLHAPALVYSRELAEIIDEDTEVACSGILPGTPEYIGNIVVLSNK FT CSLGLTEEQILSSLRIWSSKIAVAEASAKKKHAEQNPGELKNHILRALGLLTHSYHLDL FT QETLDALSWIQLGISLGWIQGSDNSSIWNPVFWQARRGHLALTKQPEDNKSLQKEVISQ FT LRADVLKRLAEGLSANGF" FT misc_feature complement(53062..53820) FT /note="Pfam match to entry PF00217 ATP-gua_Ptrans, FT ATP:guanido phosphotransferase, C-terminal catalytic domain FT , score -94.5, E-value 0.00042" FT CDS complement(53831..54349) FT /transl_table=11 FT /locus_tag="CAB043" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae hypothetical protein FT cpn0700 or cpj0700 or cp0046 SWALL:Q9Z7K5 (EMBL:AE001652) FT (171 aa) fasta scores: E(): 1.4e-44, 67.05% id in 170 aa. FT Only significant full-length database matches are to FT predicted Chlamydiaceae proteins." FT /db_xref="GOA:Q5L767" FT /db_xref="InterPro:IPR001943" FT /db_xref="UniProtKB/TrEMBL:Q5L767" FT /protein_id="CAH63501.1" FT /translation="MATSKPHLCYHCQKPATICYTEVDKDKILRSYVCDSCPCPSHYYS FT RDNIVLGSSGTSVTLECGNCKTVWKPTADENQLFGCHLCYTNFKTQLIPKLVHTKAMCS FT SATADNGRGGLHIGRSPGEAASMNPLLKLIALNEALQDTLAREDYEQAAVIRDQINHLK FT NQNSHDSFQ" FT misc_feature complement(53855..53962) FT /note="Pfam match to entry PF02151 UVR, UvrB/uvrC motif , FT score 34.1, E-value 2.1e-07" FT tRNA complement(54461..54533) FT /gene="tRNA-Lys" FT /product="transfer RNA-Lys" FT /note="anticodon TTT, Cove score 90.95" FT tRNA complement(54560..54634) FT /gene="tRNA-Glu" FT /product="transfer RNA-Glu" FT /note="anticodon TTC, Cove score 48.65" FT CDS complement(54754..55296) FT /transl_table=11 FT /locus_tag="CAB044" FT /product="putative ribosome recycling factor" FT /note="Similar to Chlamydia pneumoniae putative ribosome FT recycling factor Frr or Rrf or cpn0699 or cp0047 FT SWALL:RRF_CHLPN (SWALL:Q9Z7K6) (180 aa) fasta scores: E(): FT 1.5e-46, 81.11% id in 180 aa and to Escherichia coli, and FT Escherichia coli O157:H7 ribosome recycling factor Frr or FT Rrf SWALL:RRF_ECOLI (SWALL:P16174) (185 aa) fasta scores: FT E(): 5.8e-17, 37.64% id in 178 aa." FT /db_xref="GOA:Q5L766" FT /db_xref="InterPro:IPR015998" FT /db_xref="UniProtKB/Swiss-Prot:Q5L766" FT /protein_id="CAH63502.1" FT /translation="MSILADTEKKMAAALEFFTKEVRSFRTGKANPALVETVTVDVYGT FT TMRLSDLASISVADTRQLVISPYDANNVSAISKGIIAANLNLQPDVEGSIVRIKIPEPT FT AEYRNEVIKQLRRKSEEAKVAIRNIRRESNDKLKKDSDLTEDAVKGMEKKIQELTDKFC FT KQIDKMSKQKEVDLSSI" FT misc_feature complement(54763..55248) FT /note="Pfam match to entry PF01765 RRF, Ribosome recycling FT factor , score 253.6, E-value 1.7e-73" FT CDS complement(55280..56020) FT /transl_table=11 FT /locus_tag="CAB045" FT /product="putative uridylate kinase" FT /EC_number="2.7.4.-" FT /note="Similar to Chlamydia pneumoniae uridylate kinase FT pyrH or cpn0698 or cp0048 SWALL:PYRH_CHLPN (SWALL:Q9Z7K7) FT (248 aa) fasta scores: E(): 7.6e-76, 82.44% id in 245 aa, FT and to Chlamydia muridarum uridylate kinase pyrH or tc0049 FT SWALL:PYRH_CHLMU (SWALL:P71147) (245 aa) fasta scores: E(): FT 1.8e-66, 73.84% id in 237 aa, and to Chlamydia trachomatis FT uridylate kinase pyrH or ct678 SWALL:PYRH_CHLTR FT (SWALL:O84685) (245 aa) fasta scores: E(): 3.7e-66, 72.99% FT id in 237 aa" FT /db_xref="GOA:Q5L765" FT /db_xref="InterPro:IPR015963" FT /db_xref="UniProtKB/Swiss-Prot:Q5L765" FT /protein_id="CAH63503.1" FT /translation="MSKRITRVLFKISGESLSTDSGNRIDEVRLSRLVAELRAVRNCDI FT ETALVIGGGNILRGLAQQKELQINRVSADQMGMLATLINGMAVADALKADDIPCLLTST FT LSCPQLADLYTPQKSEEALNQGKIVICTTGTGSPYLTTDTGAALRACELKVDILLKATM FT HVDGVYNKDPRSFSDAVKYDRISFKDFLAQGLGVMDASAVSLCMDSNIPIRVFSFVKHS FT LEQAIFDENIGTLIGEEATHVHSS" FT misc_feature complement(55370..56005) FT /note="Pfam match to entry PF00696 aakinase, Amino acid FT kinase family , score 181.0, E-value 1.3e-51" FT CDS complement(56036..56884) FT /transl_table=11 FT /locus_tag="CAB046" FT /product="putative elongation factor" FT /note="Similar to Chlamydia pneumoniae elongation factor ts FT Tsf or cpn0697 or cp0049 SWALL:EFTS_CHLPN (SWALL:Q9Z7K8) FT (282 aa) fasta scores: E(): 2e-76, 74.82% id in 282 aa," FT /db_xref="GOA:Q5L764" FT /db_xref="InterPro:IPR000449" FT /db_xref="UniProtKB/Swiss-Prot:Q5L764" FT /protein_id="CAH63504.1" FT /translation="MSNFSMETLKLLRQQTGVGLTKCKEALAECNGNLEEAVVYLRKLG FT LASASKKEHRETKEGVIAAKSDSRGTAVVEVNVETDFVANNAVFRTFVDGLVEDVLNHK FT VDNVDALLQLPSSQDASLTVDELRAVTMQTVGENIRINRIKYLPKTTNESVGIYSHGNG FT KTVSVTVLSGISDEESLAKDISMHIVAAQPLFLNKESVPEDALAREKEVISSQIQGKPQ FT AVIDKIISGKLGTFFQDVCLLEQAFIKNPDITIQGLINEASKTRGNSVEVKEFILWKIG FT A" FT misc_feature complement(56039..56716) FT /note="Pfam match to entry PF00889 EF_TS, Elongation factor FT TS , score 326.7, E-value 1.8e-95" FT misc_feature complement(56630..56662) FT /note="PS01127 Elongation factor Ts signature 2." FT misc_feature complement(56753..56875) FT /note="Pfam match to entry PF00627 UBA, UBA/TS-N domain , FT score 40.6, E-value 2.3e-09" FT misc_feature complement(56804..56851) FT /note="PS01126 Elongation factor Ts signature 1." FT CDS complement(56884..57714) FT /transl_table=11 FT /gene="rpsB" FT /gene_synonym="rs2" FT /locus_tag="CAB047" FT /product="putative 30s ribosomal protein s2" FT /note="Similar to Chlamydia pneumoniae 30s ribosomal FT protein s2 RpsB or Rs2 or cpn0696 or cp0050 SWALL:RS2_CHLPN FT (SWALL:Q9Z7K9) (277 aa) fasta scores: E(): 1e-81, 79.21% id FT in 279 aa, and to Bacillus subtilis 30s ribosomal protein FT s2 RpsB SWALL:RS2_BACSU (SWALL:P21464) (245 aa) fasta FT scores: E(): 5.3e-39, 50.44% id in 224 aa" FT /db_xref="GOA:Q5L763" FT /db_xref="InterPro:IPR018130" FT /db_xref="UniProtKB/Swiss-Prot:Q5L763" FT /protein_id="CAH63505.1" FT /translation="MEEQPLCNLSVKDLMEAGAHFGHQTRRWNPKMKLYIFEEKNGLYI FT INLAKTLYQLRKALPQVCKVIKENKPILFVGTKKQAKCVIKEAAIEAGEYFVAERWLGG FT MLTNMTTIRNSIKTLDKIEKDLTQNSSYLTKKEIALLAKRHQKLLKNLEGIRYLKKAPG FT LVIVVDPSYEKIAVAEAKKLGIPVLALVDTNCDPTPIDYVIPCNDDSLKSIRLIISTIK FT DSIIDTKKKLGVEIVSPIKTLDIQDSEDMDVYATDEDNRQEDLLAKKYDSNEAN" FT misc_feature complement(57028..57675) FT /note="Pfam match to entry PF00318 Ribosomal_S2, Ribosomal FT protein S2 , score 306.7, E-value 1.8e-89" FT misc_feature complement(57157..57231) FT /note="PS00963 Ribosomal protein S2 signature 2." FT misc_feature complement(57649..57684) FT /note="PS00962 Ribosomal protein S2 signature 1." FT tRNA complement(57797..57867) FT /gene="tRNA-Gly" FT /product="transfer RNA-Gly" FT /note="anticodon TCC, Cove score 69.63" FT CDS complement(58095..59264) FT /transl_table=11 FT /gene="ompA" FT /locus_tag="CAB048" FT /product="major outer membrane protein precursor" FT /note="Chlamydophila abortus major outer membrane protein FT precursor OmpA SWALL:AAK00237 (EMBL:AF269256) (389 aa) FT fasta scores: E(): 1.2e-160, 100% id in 389 aa" FT /db_xref="GOA:P16567" FT /db_xref="InterPro:IPR000604" FT /db_xref="UniProtKB/Swiss-Prot:P16567" FT /protein_id="CAH63506.1" FT /translation="MKKLLKSALLFAATGSALSLQALPVGNPAEPSLLIDGTMWEGASG FT DPCDPCSTWCDAISIRAGYYGDYVFDRVLKVDVNKTITGMGAVPTGTAAANYKTPTDRP FT NIAYGKHLQDAEWFTNAAFLALNIWDRFDIFCTLGASNGYFKASSAAFNLVGLIGVKGS FT SIAADQLPNVGITQGIVEFYTDTTFSWSVGARGALWECGCATLGAEFQYAQSNPKIEML FT NVVSSPAQFVVHKPRGYKGTAFPLPLTAGTDQATDTKSATIKYHEWQVGLALSYRLNML FT VPYISVNWSRATFDADAIRIAQPKLAAAVLNLTTWNPTLLGEATALDTSNKFADFLQIA FT SIQINKMKSRKACGVAVGATLIDADKWSITGEARLINERAAHMNAQFRF" FT misc_feature complement(58098..59264) FT /note="Pfam match to entry PF01308 Chlamydia_OMP, Chlamydia FT major outer membrane protein , score 970.8, E-value FT 2.2e-289" FT misc_feature complement(59199..59264) FT /note="Signal peptide predicted for CAB048 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.932 between residues 22 and 23" FT CDS 59869..63141 FT /transl_table=11 FT /locus_tag="CAB049" FT /product="putative penicillin-binding protein" FT /note="Similar to Chlamydia pneumoniae penicillin-binding FT protein, putative cp0052 SWALL:Q9K2E6 (EMBL:AE002167) (1090 FT aa) fasta scores: E(): 0, 67.76% id in 1089 aa, and to FT Chlamydia pneumoniae pbp2-transglycolase/transpeptidase FT pbp2 or cpn0694 SWALL:Q9Z7L0 (EMBL:AE001651) (1090 aa) FT fasta scores: E(): 0, 67.76% id in 1089 aa," FT /db_xref="GOA:Q5L761" FT /db_xref="InterPro:IPR001460" FT /db_xref="UniProtKB/TrEMBL:Q5L761" FT /protein_id="CAH63507.1" FT /translation="MKSPKKRRSYLTVPEKTNRLLSGIIVALAIIAVRLWHLAVVEHDQ FT KLEEAYKPQKRVIPELIERATICDRFGKVLAENKMQYDVSVAYSAIRDLPTRAWRARAD FT GTRELIPVRKNYIARLAQLLAQELHLDKDTIEDNIHAKASVLGSVPYVVQANVSERTYL FT GLKMMMKHWPGLHVEPSVRRYYPMGKTASDILGYVGPISAQEYKSVTHELSKLRECVRA FT YEEGENPKFPEGLASIDQVRSLLNSLENNAYSLNALVGKVGIEAYCDGSLRGQLGKKTV FT LVDRRGNFIQGLHEVEAISGKKLQLTLSTELQAFADALLLDHEKTEQFRSAQSLKKQKF FT LPPLFPWIKGGAIIALDPNNGQILAMASSPRYHNNDFIDIRDADSEARSAVYRWLENTE FT HIAEVYDRKVPLRRERRSSLTGLCYDEELSLTFDYFLDFILPNTSEVKSVIQRYGTVHN FT AVKIQHAMERLLEVFSYSEGHCSCSSIFDAVFPVEQEHIAIGRVISIKQQQWIARCHKA FT HEQEIEEIKQELEPFFAELPANYDKLLLVDLFQLVVDPSKIDPELLASVASFSLSEFFE FT CQGHYVALRSAFSKIVEDIFTEVDFKEWRKLYFAKFLEVKRKEENERKQRYPTPYVDYL FT VEEQRAQYQDFRRCYLDRFLAYLLSGQGDIENQKAYYEALSVWKRELENGAHQALPWYE FT HYEFLKQKFSDSSIDLLRLFVSFREFLELQRPLYGNYAPMLTRNVPQKEQDLAAAFYPT FT YGYGYLRSHAFGQAATLGSIFKLVSAYSVLSQEVMRGNVDVDYLSRLLVIIDRKSFGYA FT STKPHVGFFKDGTPIPSFYRGGILPKNDYSGRGRIDLISALEMSSNPYFSLLVGEYLSD FT PEDLCHAAALFGFGEKTGVGLLGEYAGAVPQDVAYNRSGLYATAIGQHTLIVTPLQTAV FT MMAALVNGGTVYVPSLVLGEWDGEEFSPTPPMKKRDVFMPECITELFKSGMHNVIWGNY FT GTTRSIRDQFSPELLTRIIGKTSTAESIVRVGLDRQYGSMKMKHVWFAAVGFSDEELMH FT PDIVVIVYLRLGEFGRDAAPIAVKMIEKWENIRKKEKFSAMN" FT misc_feature 59869..59994 FT /note="Signal peptide predicted for CAB049 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.665) with cleavage site FT probability 0.279 between residues 42 and 43" FT misc_feature 60043..60750 FT /note="Pfam match to entry PF03717 PBP_dimer, FT Penicillin-binding Protein dimerisation domain , score FT 158.2, E-value 9.4e-45" FT misc_feature 60913..61005 FT /note="Pfam match to entry PF00905 Transpeptidase, FT Penicillin binding protein transpeptidase domain , score FT 22.7, E-value 1.2e-06" FT misc_feature 62029..63096 FT /note="Pfam match to entry PF00905 Transpeptidase, FT Penicillin binding protein transpeptidase domain , score FT -32.1, E-value 2.9e-08" FT CDS 63209..64216 FT /transl_table=11 FT /locus_tag="CAB050" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae tpr repeats-ct683 FT hypothetical protein cpn0693 or cpj0693 or cp0053 FT SWALL:Q9Z7L1 (EMBL:AE001651) (339 aa) fasta scores: E(): FT 1.4e-115, 79.16% id in 336 aa, and to Chlamydia muridarum FT type III secretion chaperone, putative tc0055 SWALL:Q9PLP4 FT (EMBL:AE002273) (335 aa) fasta scores: E(): 1.3e-112, FT 77.67% id in 327 aa" FT /db_xref="GOA:Q5L760" FT /db_xref="InterPro:IPR013026" FT /db_xref="UniProtKB/TrEMBL:Q5L760" FT /protein_id="CAH63508.1" FT /translation="MEEAAKHLAKEFLCSGINFFLSGEYEQAEQRLKETLELDPTAALA FT YCYLGIIALESGRTAEALTWCTKGLESEPTDSYLRYCYGVALDRDNRCEEAVEQYRAYI FT VLHPDDAECWFSLGGVYHRLGKYTEAIECFDKILELDPWNPQSLYNKAVVLTDMNNEQE FT AIALLETTVRKNPLYWKAWIKLGYLLSRHKQWDKATEAYERVVQLRPDLSDGHYNLGLC FT YLTLDKTRLALKAFQEALFLNEEDADAHFYVGLAYMDLKQNRQASDAFHRALGINLEHE FT RSHYLLGYLYHMEGQFEKAEKELSFLTTKDSTFAPLLQKTVSSGQYEPKLDVFP" FT misc_feature 63233..63334 FT /note="Pfam match to entry PF00515 TPR, TPR Domain , score FT 8.7, E-value 0.34" FT misc_feature 63335..63436 FT /note="Pfam match to entry PF00515 TPR, TPR Domain , score FT 23.3, E-value 0.00037" FT misc_feature 63437..63538 FT /note="Pfam match to entry PF00515 TPR, TPR Domain , score FT 1.6, E-value 2" FT misc_feature 63539..63640 FT /note="Pfam match to entry PF00515 TPR, TPR Domain , score FT 46.2, E-value 4.8e-11" FT misc_feature 63641..63742 FT /note="Pfam match to entry PF00515 TPR, TPR Domain , score FT 16.8, E-value 0.034" FT misc_feature 63743..63844 FT /note="Pfam match to entry PF00515 TPR, TPR Domain , score FT 31.9, E-value 9.3e-07" FT misc_feature 63845..63946 FT /note="Pfam match to entry PF00515 TPR, TPR Domain , score FT 34.8, E-value 1.3e-07" FT misc_feature 63947..64048 FT /note="Pfam match to entry PF00515 TPR, TPR Domain , score FT 25.3, E-value 9e-05" FT misc_feature 64049..64150 FT /note="Pfam match to entry PF00515 TPR, TPR Domain , score FT 8.7, E-value 0.34" FT CDS 64552..66006 FT /transl_table=11 FT /locus_tag="CAB051" FT /product="putative ABC transporter" FT /note="Similar to Chlamydia pneumoniae ABC transporter FT cpn0692 or cpj0692 or cp0054 SWALL:Q9Z7L2 (EMBL:AE001651) FT (484 aa) fasta scores: E(): 2.3e-161, 80.78% id in 484 aa, FT and to Erwinia chrysanthemi SufB protein SWALL:Q9EXP5 FT (EMBL:AJ301654) (499 aa) fasta scores: E(): 8.7e-93, 52.29% FT id in 501 aa" FT /db_xref="GOA:Q5L759" FT /db_xref="InterPro:IPR000825" FT /db_xref="UniProtKB/TrEMBL:Q5L759" FT /protein_id="CAH63509.1" FT /translation="MSQSIEDFLHNHEDYPYGFVTPIESEGLTRGLSEETIIKISQLRN FT EPSFILDFRLKAYQHWKKLQEPIWARLSYPTIDYDSIVYFSAPKQKNPLGRLEEADPEI FT LETFKKLGIPLDEQKRLLNVQNVAVDLVFDSVSIGTTFKEALDKAGVIFCSMNEAIREY FT PELVKKYLGLVVSYRDNYFAALNAAVFSDGSFVYLPKGVRCPMEISTYFRINDKESGQF FT ERTLIIAEDDSFVSYLEGCTAPSYSSHQLHAAVVELVAHERAVVRYSTVQNWFSGDRKT FT GKGGIYNFVTKRGLCAGYKSKISWSQVEVGAAITWKYPSCILRGKESVGEFYSIALTNG FT KMQADTGTKMIHVGEKTTSTIVSKGISSEESHNTFRSLVSISEGAVGSRNHTQCDSMLI FT GRACGAYTDPRISVENSQSSVEHEATTSKLRADQLMYLRSRGLNAEEAVSLVVHGFCLE FT IIEQLPLEFAREASKLLFVKLENSVG" FT misc_feature 65140..65928 FT /note="Pfam match to entry PF01458 UPF0051, Uncharacterized FT protein family (UPF0051) , score 430.1, E-value 1.3e-126" FT CDS 66010..66777 FT /transl_table=11 FT /locus_tag="CAB052" FT /product="ABC transporter ATP-binding protein" FT /note="Similar to Chlamydia pneumoniae ABC transporter FT ATPase AbcX or cpn0691 or cp0055 SWALL:Q9Z7L3 FT (EMBL:AE001651) (256 aa) fasta scores: E(): 2.6e-56, 67.45% FT id in 255 aa, and to Erwinia chrysanthemi SufC protein FT SWALL:Q9EXP4 (EMBL:AJ301654) (248 aa) fasta scores: E(): FT 1.7e-32, 45.71% id in 245 aa" FT /db_xref="GOA:Q5L758" FT /db_xref="InterPro:IPR010230" FT /db_xref="UniProtKB/TrEMBL:Q5L758" FT /protein_id="CAH63510.1" FT /translation="MLHIQNLHVCCEDVKILDYLNLHIHPGELHIIMGPNGAGKSTFAK FT VLSGDDSLSIISGEISLLGQDLLEKAPEERAHMGLFIGFQQPPEIPGVNNKLFLKDAYN FT ACRRSRQEEEMAEAEFDMLLSSVSETYEFASFQHFLQRNINEGFSGGERKKNEIWQMLV FT LEPEMILLDEPDSGLDVDALRFICKTIEKYRELHPKSATCIVTHNPKLGSLLEPDHVHI FT LLEGKIACSGGVSLMQELEEKSYHEVLARSSWG" FT misc_feature 66088..66687 FT /note="Pfam match to entry PF00005 ABC_tran, ABC FT transporter , score 104.7, E-value 1.2e-28" FT misc_feature 66109..66132 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 66792..68018 FT /transl_table=11 FT /locus_tag="CAB053" FT /product="putative ABC transport protein" FT /note="Similar to Chlamydia pneumoniae ABC transporter FT membrane protein cpn0690 or cpj0690 or cp0056 SWALL:Q9Z7L4 FT (EMBL:AE001651) (415 aa) fasta scores: E(): 4.2e-90, 55.97% FT id in 402 aa, and to Escherichia coli Sufd protein FT SWALL:SUFD_ECOLI (SWALL:P77689) (423 aa) fasta scores: E(): FT 1.9e-10, 26.68% id in 341 aa" FT /db_xref="GOA:Q5L757" FT /db_xref="InterPro:IPR000825" FT /db_xref="UniProtKB/TrEMBL:Q5L757" FT /protein_id="CAH63511.1" FT /translation="MEHTFPIVKDSPIHQAAQAYYEKYSQLESFKAIFRSYPWFKNLAQ FT SPEDYHIANGGSETAKQHWLHHENSLSCECILINGKYESSLSQLPEGVLSMTLKEARSI FT FSTFIKKYTLDTHPLAFLNSVCVQEEGVVIYIPEEFQVSEPICIRHICSPTSRSDKVIY FT SPRIIVIVGKHSSCRVFVSHHTERESGVAESFAIVNGLTEVFVSEGAELSLTMQPKYIS FT EERISWAHMATIEAQGACSIHQHLQEHVSGCGWFDNTFSMIGDGAHGESLVSTLSPKKT FT WVRNLMYHDAERTTSRQNIKSILSSGHFLFEGGIHITTQGMFSDAYQKHDTLLLSDDAC FT VTTFPRLEILTDDVKASHGAAVGPLDPQQIFYMQSRGMTREEAQKKLVQGFLSIEPSQE FT AFPKLSEQM" FT misc_feature 67194..67976 FT /note="Pfam match to entry PF01458 UPF0051, Uncharacterized FT protein family (UPF0051) , score 78.0, E-value 1.3e-20" FT CDS 68050..69270 FT /transl_table=11 FT /locus_tag="CAB054" FT /product="putative cysteine desulfurase" FT /EC_number="4.4.1.-" FT /note="Similar to Chlamydia pneumoniae probable cysteine FT desulfurase Csd or cpn0689 or cp0057 SWALL:CSD_CHLPN FT (SWALL:Q9Z7L5) (406 aa) fasta scores: E(): 5.2e-107, 67.66% FT id in 402 aa, and to Escherichia coli selenocysteine lyase FT CsdB or SufS SWALL:CSDB_ECOLI (SWALL:P77444) (406 aa) fasta FT scores: E(): 2.1e-60, 42.14% id in 401 aa" FT /db_xref="GOA:Q5L756" FT /db_xref="InterPro:IPR015421" FT /db_xref="UniProtKB/TrEMBL:Q5L756" FT /protein_id="CAH63512.1" FT /translation="MVCRIKEDFPIFSNKKLQGESYIYLDSAATTHKPKKVIDAITDFY FT SSSYATVNRNVYTSSQVTTANYNAVRGKVRAWIQAAYDEEIVFTRGTTAALNLLAISAN FT DAFIPEGGVVLVSEVEHHANVLSWELACRRRGSCVKKIAVDHLGYIDLEHLEVLLKAGA FT VFVSIAHVSNVTGCIQPLKEIASLAHQYGAYVAVDGAQGVAHTSVDVVDWDVDFYAFSG FT HKMYAPTGLGVLYGKKALLEKLPPVEGGGDMVSIYDSEHPEYLPAPLKFEAGTPPIASI FT LGLGAAIDYLQSLPDSVYQEEEELTQYLYNELLTIPGMQILGPEVGHPRGALISFKVEG FT AHPFDIGCLLDLQGIAVRTGHQCAQPAMTRWDLGHVLRVSLGLYNDKEDVDAFLSALRV FT ILNKVRV" FT misc_feature 68140..69228 FT /note="Pfam match to entry PF00266 aminotran_5, FT Aminotransferase class-V , score 57.8, E-value 1.6e-14" FT misc_feature 68692..68751 FT /note="PS00595 Aminotransferases class-V FT pyridoxal-phosphate attachment site." FT CDS complement(69274..70062) FT /transl_table=11 FT /locus_tag="CAB055" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae hypothetical protein FT cpn0688 or cpj0688 or cp0058 SWALL:Q9Z7L6 (EMBL:AE001651) FT (252 aa) fasta scores: E(): 9.3e-50, 53.25% id in 246 aa. FT Only significant full-length database matches are to FT predicted Chlamydiaceae proteins." FT /db_xref="GOA:Q5L755" FT /db_xref="InterPro:IPR002509" FT /db_xref="UniProtKB/TrEMBL:Q5L755" FT /protein_id="CAH63513.1" FT /translation="MLIVLAFRQVFFSKSPHVLEKFLRYLLLLKQSYPLVLPGEPIKKL FT SVMLTFDYVSVDFYAHIFPFLQTHHIPAVVGIAWRYVAENSAQTLPLSYRLAPSEALAF FT QDEVFAKHQPFCSQQELQALADSSVIQLASSGFAIRNLQNTPPYLATEIFLSKYSIEKA FT LGKNPIGFFYPFGKYDHICEQTVRKYYPFSFVLGDVINMKNKNHRIYRLDMTRAAYTLP FT RPIHNPYYVKNWLIDRCQQMRLRWYPYSKEHIEFQGSSSQ" FT CDS complement(70256..70909) FT /transl_table=11 FT /locus_tag="CAB056" FT /product="putative membrane protein" FT /note="Similar to Chlamydia pneumoniae hypothetical protein FT cpn0687 or cp0059 SWALL:Q9Z7L7 (EMBL:AE001651) (217 aa) FT fasta scores: E(): 2.7e-47, 58.33% id in 216 aa. Only FT significant database matches are to predicted Chlamydiaceae FT proteins." FT /db_xref="UniProtKB/TrEMBL:Q5L754" FT /protein_id="CAH63514.1" FT /translation="MKNLLSLVWKRVYSYSFTLTFLITLSIFLTGKIIYHLQKNDREKH FT ESILLLTKTAESAVFQGFIPPKTALPMLERAYRMGGKSVQPYAGFLSSCFYIHNEPLRG FT AYYAGLAFGSGSHFRMPSPAQVLLKEIADAQATEDYQTALEKSSQLLQFTASSADYPTL FT RFLTLLRIIEIKEILNQDTSIDFEELKALPLFKEFEQFYKDGEWTLTKRFGKKH" FT misc_feature complement(70661..70684) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(70799..70867) FT /note="1 probable transmembrane helix predicted for CAB056 FT by TMHMM2.0 at aa 15-37" FT CDS 71150..71989 FT /transl_table=11 FT /locus_tag="CAB057" FT /product="putative chromosome partitioning protein" FT /note="Similar to Chlamydia pneumoniae probable chromosome FT partitioning protein parB or cpn0684 or cp0062 FT SWALL:PARB_CHLPN (SWALL:Q9Z7M0) (286 aa) fasta scores: E(): FT 5.5e-65, 68.72% id in 275 aa." FT /db_xref="GOA:Q5L753" FT /db_xref="InterPro:IPR004437" FT /db_xref="UniProtKB/TrEMBL:Q5L753" FT /protein_id="CAH63515.1" FT /translation="MSGVINKDTIIEVAIDNIRVSPFQPRRVFSESELQELVASLKSVG FT LIHPPVVREIRSGDRVLYYELIAGERRWRALQLAGYTTIPVVLKQVVADDIAAEATLIE FT NIQRVNLSPMEMAEAFKKLINVFGLTQDKVAVRVGKKRSTVANYLRLFSLSESIQKSLY FT LGEITLGHAKVILTLEDPNLREILAEKIISQRLAVREAEQEAKKLLSGEVLTTRAAKEQ FT VKACATSPHCHEMQKRLSQSLGYKVTVKPQGSHYSVSLHVQDEEQLKQLEEWLLKKS" FT misc_feature 71180..71467 FT /note="Pfam match to entry PF02195 ParBc, ParB-like FT nuclease domain , score 125.9, E-value 4.7e-35" FT misc_feature 71534..71599 FT /note="Predicted helix-turn-helix motif with score FT 1525.000, SD 4.38 at aa 129-150, sequence FT LTQDKVAVRVGKKRSTVANYLR" FT CDS complement(72028..72996) FT /transl_table=11 FT /locus_tag="CAB058" FT /product="putative peptide ABC transport ATP-binding FT protein" FT /note="Similar to Chlamydia pneumoniae ABC ATPase dipeptide FT transport DppF_2 or cpn0683 or cp0064 SWALL:Q9Z7M1 FT (EMBL:AE001650) (324 aa) fasta scores: E(): 5.1e-72, 65.09% FT id in 318 aa," FT /db_xref="GOA:Q5L752" FT /db_xref="InterPro:IPR010066" FT /db_xref="UniProtKB/TrEMBL:Q5L752" FT /protein_id="CAH63516.1" FT /translation="MNDPLVQANQLKKYYYKRTSWFRKKTIATRAIDNISFSIPSGKIV FT GLIGESGSGKTTLALALSGLLSLTSGYLSFDNTPIKLHSRHDLKKLRSYVRMVFQNPKA FT SLNPRKTIFDSLGHALIHHRIITKDKLPSVIGESLERVGLSADYFYHYPHQLSGGQQQR FT VSIARALLGAPKLIICDEVVSALDLSMQAQILNMLSKLQKELQMSYLFISHDLAVVRSF FT CSEVLIMYKGKIVESGATEDIFLNPKHPYTQMLLNSQLPDLPENRSIEHKLQSFQKNSS FT ENPSPTGCVFYNRCPKRQKTCLQGPIPEQTEGNKHTRLCIF" FT misc_feature complement(72301..72873) FT /note="Pfam match to entry PF00005 ABC_tran, ABC FT transporter , score 192.7, E-value 3.8e-55" FT misc_feature complement(72487..72531) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(72829..72852) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(72989..73951) FT /transl_table=11 FT /gene="dppD" FT /locus_tag="CAB059" FT /product="putative peptide ABC transport ATP-binding FT protein" FT /note="Similar to Chlamydia pneumoniae ABC ATPase dipeptide FT transport dppD or cpn0682 or cp0065 SWALL:Q9Z7M2 FT (EMBL:AE001650) (324 aa) fasta scores: E(): 3.3e-73, 68.73% FT id in 323 aa." FT /db_xref="GOA:Q5L751" FT /db_xref="InterPro:IPR010066" FT /db_xref="UniProtKB/TrEMBL:Q5L751" FT /protein_id="CAH63517.1" FT /translation="MTHPPILQVKDLSVSLHKRRAHYPIVESLSFDLHKGKTLAIIGES FT GSGKSVTAQALMQLLPSPLFSTSGEILFHGKDLFKAPRGILRSIFGTKISMIFQNPQSS FT LNPVFTIEQQFQELIRTHLHLPTQEGKNKIIQALIDTGFHNPELCLKLYPHQLSGGMLQ FT RVSIAMALLTSPEILIADEPTTALDVSVQYQILQLLKGLQNKLGMALLIITHNMGVVAE FT TADDVLVLYAGRLAEYAPVKDIFHNPCHPYTQDLLASRPSLQSETFTTIPGQPPHYSAL FT PSGCCYYPRCSKAYGKCKVESPEAQQVTEGHKVRCWLYE" FT misc_feature complement(73253..73846) FT /note="Pfam match to entry PF00005 ABC_tran, ABC FT transporter , score 185.1, E-value 7.5e-53" FT misc_feature complement(73439..73483) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(73802..73825) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 74005..74679 FT /transl_table=11 FT /locus_tag="CAB060" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae protein cpn0681 or FT cp0066 or cpj0681 SWALL:Y681_CHLPN (SWALL:Q9Z7M3) (224 aa) FT fasta scores: E(): 2.2e-70, 77.67% id in 224 aa." FT /db_xref="InterPro:IPR002727" FT /db_xref="UniProtKB/TrEMBL:Q5L750" FT /protein_id="CAH63518.1" FT /translation="MQTLARLFGQSPFAPLQAHLEVVAFCVQQMVPIFTALRDGDYKQV FT QIIAKSISDKEYQADCIKNDMRNHLPVGLFMPISRAGLLEIISIQDSIADVSEDVAILL FT TVRKLRFYPEFEKIFFQFLHKSVETFDLTMTVIQEFNKLLESSFGGHKADKARFLVSRV FT AKAEHECDVIQREIMQIFFSDEFTISEKEFYLWLQVIKRAAGISDSAEKLAHRVNMTLE FT EK" FT misc_feature 74014..74673 FT /note="Pfam match to entry PF01865 DUF47, Protein of FT unknown function DUF47 , score 255.5, E-value 4.7e-74" FT CDS 74686..75966 FT /transl_table=11 FT /locus_tag="CAB061" FT /product="putative phosphate permease" FT /note="Similar to Chlamydia pneumoniae putative phosphate FT permease cpn0680 or cp0067 or cpj0680 SWALL:Y680_CHLPN FT (SWALL:Q9Z7M4) (426 aa) fasta scores: E(): 3.4e-130, 79.81% FT id in 426 aa," FT /db_xref="GOA:Q5L749" FT /db_xref="InterPro:IPR001204" FT /db_xref="UniProtKB/TrEMBL:Q5L749" FT /protein_id="CAH63519.1" FT /translation="MLALLIFVLLCGFYTSWNIGANDVANAVGPSVGSGVLTLRQAVVI FT AAIFEFLGALFLGDRVAGTIESHIVSVSDPLMASGDYVYGMTGALLATGVWLQLASYFG FT WPVSTTHSIVGAVIGFGLVLGKGTVIYWGSIGAILVSWVISPLMGGCIAYAIFSFIRRN FT ILYKNDPVGAMIRIAPFLAAFVIIVLGIIIVCGGIVTRLIPLPWALASVFLVGSMAYAI FT MFKYVHTPHCSFISPSPKSGSLLCRLKTCGGNYGRKYLIVERIFAYLQIIITCFMAFAH FT GSNDVANAIAPVAGVLRHVYPHVYSSYTLIGLMAFGGVGLIIGLSIWGWRVIETVGCKI FT TELTPSRGFSVGLSSAVTIALASAIGLPISTTHVVVGAVLGIGLARGIHAINLNIIKDI FT IMSWFITLPAGAILSILFFFALRALFQ" FT misc_feature join(74689..74748,74932..75000,75019..75087,75097..75165, FT 75226..75294,75304..75357,75463..75531,75607..75675, FT 75736..75795,75805..75873,75892..75960) FT /note="11 probable transmembrane helices predicted for FT CAB061 by TMHMM2.0 at aa 2-21, 83-105, 112-134, 138-160, FT 181-203, 207-224, 260-282, 308-330, 351-370, 374-396 and FT 403-425" FT misc_feature 74740..75927 FT /note="Pfam match to entry PF01384 PHO4, Phosphate FT transporter family , score 584.6, E-value 4.1e-173" FT CDS 76004..77215 FT /transl_table=11 FT /gene="pgk" FT /locus_tag="CAB062" FT /product="putative phosphoglycerate kinase" FT /EC_number="2.7.2.3" FT /note="Similar to Chlamydia pneumoniae phosphoglycerate FT kinase Pgk or cpn0679 or cp0068 SWALL:PGK_CHLPN FT (SWALL:Q9Z7M5) (402 aa) fasta scores: E(): 2.1e-128, 81.09% FT id in 402 aa and Bacillus subtilis phosphoglycerate kinase FT PgK SWALL:PGK_BACSU (SWALL:P40924) (394 aa) fasta scores: FT E(): 2.4e-65, 46.61% id in 399 aa." FT /db_xref="GOA:Q5L748" FT /db_xref="InterPro:IPR015824" FT /db_xref="UniProtKB/Swiss-Prot:Q5L748" FT /protein_id="CAH63520.1" FT /translation="MDRLTVRELSPEEKKVLVRVDFNVPIKDGKILDDIRIRSAMPTIH FT YLLQKRAAVILMSHLGRPQGKGFEEKYSLQPVVEVLEGYLGHHVPLAPDCVGEVARQAV FT AQISPGRVLLLENLRFHPGEEHPEEHPAFAAELSSYGDFYVNDAFGTSHRKHASVYTVP FT QAFPGRSAAGLLMEKELEFLGQHLLISPKRPFTAILGGSKVSSKIGVIEALLSQVDNLL FT LAGGMGFTFLKALGKSVGNSLVEESGIELARRVLHIAQQRNVRIVLPIDVKVAKACTPA FT VSWTEVSIDQGIPQDLEGLDIGTKTVQEFCKIIDASSTIFWNGPVGVYEVPPFDQGSMA FT IANCLARHPSAITVVGGGDAAAVVALAGCTAQVSHVSTGGGASLEFLEKGFLPGTEVLS FT PSQE" FT misc_feature 76004..77209 FT /note="Pfam match to entry PF00162 PGK, Phosphoglycerate FT kinase , score 651.6, E-value 2.6e-193" FT misc_feature 76046..76078 FT /note="PS00111 Phosphoglycerate kinase signature." FT CDS 77681..79186 FT /transl_table=11 FT /locus_tag="CAB063" FT /product="conserved hypothetical (serine rich) protein" FT /note="Similar to Chlamydophila caviae hypothetical protein FT cca00062 SWALL:Q824S7 (EMBL:AE016994) (463 aa) fasta FT scores: E(): 2.8e-44, 57.2% id in 500 aa and weakly to FT Chlamydia pneumoniae hypothetical protein cpn0677 or FT cpj0677 or cp0070 SWALL:Q9Z7M7 (EMBL:AE001650) (382 aa) FT fasta scores: E(): 5.6e-07, 26.73% id in 318 aa. Only FT significant full-length database matches are to FT Chlamydiaceae proteins." FT /db_xref="UniProtKB/TrEMBL:Q5L747" FT /protein_id="CAH63521.1" FT /translation="MGINPSGRGSNNNDLWISGAHHQHEDVQDAGTGPSGVVGSHNIST FT KNNTHESSSFLSRIASAVRSFFAGIFGDSSSRANSRASTPTPSPTSSRRFSEDSFGSCM FT DVSGEEVDTRSVSSFSSVESSSEKSFSSLDSARSTEGAARGLQKKGYTPGIKVDIPKVP FT DLASGPKRPNTPPPPPPTSPSVKTSPRGVSPSSSLTKSNTSSVASGSSATRPLKRKAPQ FT PPSEGPTQPKLQRRGSTSSMSSIDSNDSTASRTSQEISSGIADKLKAELEAHHKTKQEQ FT LAKLSDQIKERWTNHEAQEPIAYKLACLQTVTSRLGQARLEAQKEISVLRPGTSEYPLN FT TAISLSRSIWDLGEKEQRQDGESVLLPVLVRMGLEGPKLGPDEDFVNYVDQIISEYGEP FT EETYNWQGTLQSLARDLNSLRETNPNGMKKFWSSFAGKGEITMRMIANRFASANVGKYD FT PNSVRVERRWNTGALDLMNFLSSEAYVKTASILAYDALSVSED" FT CDS 79200..80372 FT /transl_table=11 FT /locus_tag="CAB064" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae cpn0676 or cpj0676 FT or cp0071 SWALL:Q9Z7M8 (EMBL:AE001650) (389 aa) fasta FT scores: E(): 3.6e-38, 35.73% id in 403 aa. Only significant FT full-length database matches are to predicted Chlamydiaceae FT proteins" FT /db_xref="UniProtKB/TrEMBL:Q5L746" FT /protein_id="CAH63522.1" FT /translation="MGAPISGGGGVEPPWKDLFTDKEFSVEGEGEDLDLEERISDHVGS FT ILDEQYAEHGIPEANASEGMNSDLQGRVQSETQEGFFRNILSRIRQAVHRLWYTRLGTP FT RFSRGRSFSKSYVALFNETELPEEAIKEAKAAPETTAGCCASIRQFFLKIFEKMCFSIC FT RKQAESSIDFCGVDPEGPEVTVALALMLRMACKWSAEKEIFYKSGNTTYSSLTALGIAP FT MASAVEAGVIVSSFHDIMKGEQVLDPLATVRGITKLSTLPYNEKVKCKEAIETLAQADA FT ASDYTLVLDLTSRLDVLASQGYEETVIVRQILASLRYTHTTLMGEYLNLWTSDTEHMDQ FT DIPIINYDLVSNIVEANLPSLEEDYRGNPREYEQKLNDMIRNFFFSYQTK" FT CDS 80525..81679 FT /transl_table=11 FT /locus_tag="CAB065" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae hypothetical protein FT cpn0675 or cp0072 or cpj0675 SWALL:Y675_CHLPN FT (SWALL:Q9Z7M9) (384 aa) fasta scores: E(): 4.2e-69, 49.34% FT id in 383 aa. Only significant full-length database matches FT are to predicted Chlamydiaceae proteins." FT /db_xref="UniProtKB/TrEMBL:Q5L745" FT /protein_id="CAH63523.1" FT /translation="MMLDLRFSTDYYLRVLELAIRDESRILVYNKKHHLLETWPIHTVL FT SPDQDAMKETIQKVIQELFSRSVISYALSGRLLSIIDMRLRQELPYTRILYKIFRKDTF FT TRKTSVIQKLLKLKNIIFLERQRPLNKVSNVASSVFAKEKTNFSSWEDFTHDVEIHAES FT ADAHLSVKEIITAESSSQVIMEALMTFLESQAMYLPLSLELLDQFVAEKAIPLQTLSEK FT SFALLSELKNLYTLSREDFQAVIGGVITNSLSAMLTNSLVGSLLFTPQGKAMVNTWQEV FT AEFSPKEANAAQGFLAEILRRIISEDLKTAAAIVNEATPEQIGRMYSIRDYSPGLWLKM FT LQMLLMRWLLDFDEKVYSLLKKSINYYTPEPSFWQQILCIFKKF" FT CDS join(81801..82025,82027..82089,82092..82910) FT /pseudo FT /transl_table=11 FT /locus_tag="CAB066" FT /product="conserved hypothetical protein (pseudogene)" FT /note="Similar to many including: Chlamydophila caviae FT nol1/nop2/sun family protein cca00065 SWALL:Q824S4 FT (EMBL:AE016994) (371 aa) fasta scores: E(): 3.1e-126, FT 85.67% id in 370 aa and to Plasmodium yoelii yoelii RNA FT methyltransferase, putative py03774 SWALL:Q7RI56 FT (EMBL:AABL01001110) (376 aa) fasta scores: E(): 1.2e-26, FT 36.38% id in 382 aa. Note this CDS carries multiple FT frameshift mutations and lacks an appropriate translational FT start codon" FT misc_feature 82155..82883 FT /note="Pfam match to entry PF01189 Nol1_Nop2_Sun, FT NOL1/NOP2/sun family , score 38.1, E-value 1e-09" FT CDS complement(82921..83283) FT /transl_table=11 FT /locus_tag="CAB068" FT /product="putative exported protein" FT /db_xref="UniProtKB/TrEMBL:Q5L744" FT /protein_id="CAH63525.1" FT /translation="MYTYLVCGLLAFIFLPRVGAAEENAEIPVPTTLCISKNEARESSS FT WYFWKDPKVVREEQHMHFLKQVILALKRPEIWNDPLNLLHILLQFDKFPEASGECHDLL FT LVVIKHRVMVLTMNAG" FT misc_feature complement(83224..83283) FT /note="Signal peptide predicted for CAB068 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.993) with cleavage site FT probability 0.722 between residues 20 and 21" FT CDS complement(83366..84667) FT /transl_table=11 FT /locus_tag="CAB069" FT /product="putative D-alanyl-d-alanine carboxypeptidase" FT /note="Similar to Chlamydia pneumoniae D-ala-d-ala FT carboxypeptidase DacF or cpn0672 or cp0075 SWALL:Q9Z7N2 FT (EMBL:AE001649) (436 aa) fasta scores: E(): 7.5e-106, FT 61.37% id in 435 aa, and to Bacillus subtilis FT penicillin-binding protein DacF precursor SWALL:DACF_BACSU FT (SWALL:P38422) (389 aa) fasta scores: E(): 9.7e-12, 29.23% FT id in 366 aa" FT /db_xref="GOA:Q5L743" FT /db_xref="InterPro:IPR001967" FT /db_xref="UniProtKB/TrEMBL:Q5L743" FT /protein_id="CAH63526.1" FT /translation="MIRVFFTFALLPFLAGLFTHPVHGQIVFPETRGNAVAVVHTETGK FT VLYAKDLDKRIYPASMTKIATALFILKKHPDVLNRFIIVKPDAIASITPQAKKQSGYRS FT PPHWLETDGVTIQLQNKEEVSGWDLFHALLICSANDAANALAIACSGSVAEFMKQLNQF FT LRELGCDHTHFNNPHGLHHPDHYTTAGDLIRIMREGLKEPLFRQVIRTTNYTMAPTNLS FT EERILHLTNKLILPGSTYYYPPALGGKTGTTKDAGRNLVFAAKKHGRSIITIAAGYSAM FT SELYEDVIALCEGVFNEQPLRRYLIPPTETYPLRLGLLGKISIPLPDGVYYDFYASEGE FT EPKTVSFVPHATKLPIQKGDLLGHWVFRNVAGERVRAEPLYASDTLHPSVGQKIRLYTK FT RIITSYRTYIVLTLVLLYYRKTRVHRRKSSRYYL" FT misc_feature complement(83414..83467) FT /note="1 probable transmembrane helix predicted for CAB069 FT by TMHMM2.0 at aa 401-418" FT misc_feature complement(83765..84604) FT /note="Pfam match to entry PF00768 Peptidase_S11, FT D-alanyl-D-alanine carboxypeptidase , score 87.4, E-value FT 1.9e-23" FT misc_feature complement(84596..84667) FT /note="Signal peptide predicted for CAB069 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 24 and 25" FT CDS join(84777..85058,85058..85198) FT /pseudo FT /transl_table=11 FT /locus_tag="CAB070" FT /product="conserved hypothetical protein (pseudogene)" FT /note="Similar to Chlamydia trachomatis hypothetical FT protein Ct550 SWALL:O84554 (EMBL:AE001325) (141 aa) fasta FT scores: E(): 1.5e-20, 64.04% id in 89 aa. Only significant FT full-length database matches are to predicted Chlamydiaceae FT proteins. The CDS contains a probable frameshift mutation FT following codon 94." FT /db_xref="PSEUDO:CAH63527.1" FT CDS complement(85199..85624) FT /transl_table=11 FT /locus_tag="CAB071" FT /product="putative sigma regulatory factor-histidine FT kinase" FT /note="Similar to Chlamydia pneumoniae sigma regulatory FT factor-histidine kinase RsbW or cpn0670 SWALL:Q9Z7N4 FT (EMBL:AE001649) (144 aa) fasta scores: E(): 1.2e-33, 65.71% FT id in 140 aa and to Bacillus subtilis anti-sigma b factor FT RsbW SWALL:RSBW_BACSU (SWALL:P17904) (160 aa) fasta scores: FT E(): 0.0011, 26.66% id in 120 aa" FT /db_xref="GOA:Q5L742" FT /db_xref="InterPro:IPR003594" FT /db_xref="UniProtKB/TrEMBL:Q5L742" FT /protein_id="CAH63528.1" FT /translation="MTSSDGEAVFPALLSELHNMLDFVKGTEQLKTFPKEKLLKLELAC FT EELLVNIISYAYQEAPTPGSIIICCNGDKDALHVTIKDHGPSFNPLTATIDIQDHLPLD FT QRKLGGLGIFLAKNSVDEFQYERHGDVNIVHLKIHNT" FT misc_feature complement(85202..85519) FT /note="Pfam match to entry PF02518 HATPase_c, Histidine FT kinase-, DNA gyrase B-, and HSP90-like ATPase , score 28.1, FT E-value 1.3e-05" FT CDS complement(85611..86210) FT /transl_table=11 FT /locus_tag="CAB072" FT /product="putative lipoprotein" FT /note="Similar to Chlamydia pneumoniae ct548 hypothetical FT protein cpn0669 or cpj0669 or cp0078 SWALL:Q9Z7N5 FT (EMBL:AE001649) (199 aa) fasta scores: E(): 6.7e-46, 64.61% FT id in 195 aa. Only significant database matches are to FT predicted Chlamydiaceae proteins." FT /db_xref="UniProtKB/TrEMBL:Q5L741" FT /protein_id="CAH63529.1" FT /translation="MRIVLFLLFSCLSGLGLSSCSGYTILRSSGTLSDLGRSILSEGIY FT LSPIDKDSLGQLTSALLYELGKRSLPVRNGESCARYLLKVQLLNEVDENTGFTYAPNKI FT GDKTLRHFIVSSEGRLSLSAKVQLIDRHSRQVIVDDCIAKKSVSFDFEPDLGVVNAHQF FT ALGQFEMHNEAIKSAWRVLYAHLAETIVQQVYYDLF" FT misc_feature complement(86145..86210) FT /note="Signal peptide predicted for CAB072 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.995) with cleavage site FT probability 0.749 between residues 22 and 23" FT misc_feature complement(86151..86183) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(86227..87183) FT /transl_table=11 FT /locus_tag="CAB073" FT /product="putative lipoprotein" FT /note="Similar to Chlamydia pneumoniae ct547 hypothetical FT protein cpn0668 or cpj0668 SWALL:Q9Z7N6 (EMBL:AE001649) FT (318 aa) fasta scores: E(): 2.4e-85, 69.81% id in 318 aa. FT Only significant database matches are to predicted FT Chlamydiaceae proteins." FT /db_xref="GOA:Q5L740" FT /db_xref="InterPro:IPR013026" FT /db_xref="UniProtKB/TrEMBL:Q5L740" FT /protein_id="CAH63530.1" FT /translation="MKSVLQFVVFLLLLSSGCYARPISFEPFSGKLSPQKFTPKYSTQE FT YLSEGKRYLEQQRYRKALLCFGMITHHFPQDPLYSEALYLTGVCYFKNDQPDLAEKAFS FT AYLQLPDANYSEELFLMKYSIAKSFAQGKRKRIFLLEGFPKLANADADALRIYDEILTA FT FPNKDLGAQALYLKGDLLVTKKDFPEAIKTFKKLTLQFSAHPLSPKSFVRLSEIYLMQA FT QKEPHNLQYLNLAKINEEAIAKQHPNHPLNSVVSANVRSMCERYALGLYSTGRFYEKKK FT KPHAASIYYTTAIENYPESSLVAKCHKRLNRITKHSS" FT misc_feature complement(86284..86385) FT /note="Pfam match to entry PF00515 TPR, TPR Domain , score FT 14.3, E-value 0.084" FT misc_feature complement(86572..86673) FT /note="Pfam match to entry PF00515 TPR, TPR Domain , score FT 11.1, E-value 0.19" FT misc_feature complement(86845..86946) FT /note="Pfam match to entry PF00515 TPR, TPR Domain , score FT 14.2, E-value 0.087" FT misc_feature complement(86956..87057) FT /note="Pfam match to entry PF00515 TPR, TPR Domain , score FT 5.4, E-value 0.78" FT misc_feature complement(87124..87183) FT /note="Signal peptide predicted for CAB073 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.995) with cleavage site FT probability 0.995 between residues 20 and 21" FT misc_feature complement(87130..87162) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 87336..88220 FT /transl_table=11 FT /locus_tag="CAB074" FT /product="putative outer membrane protein" FT /note="Similar to Chlamydia pneumoniae hypothetical protein FT cpn0667 or cpj0667 or cp0080 SWALL:Q9Z7N7 (EMBL:AE001649) FT (294 aa) fasta scores: E(): 4.4e-89, 68.7% id in 294 aa, FT and to Chlamydia trachomatis predicted omp ct546 FT SWALL:O84550 (EMBL:AE001325) (289 aa) fasta scores: E(): FT 4.4e-69, 58.76% id in 291 aa. Only significant database FT matches are to predicted Chlamydiaceae proteins." FT /db_xref="UniProtKB/TrEMBL:Q5L739" FT /protein_id="CAH63531.1" FT /translation="MKKLVLYFGTFVASLFCGVFLWDHVPCAHKAMQVTAHYSVDVFEK FT SCRFVRKVSGFEKLRVFERKFSPEQVLTFFPEHQEGKATVELIFVPHTLMHVRFSREDV FT VKKTMVSQEGAILWNLANGEMVLNTGTWSCSKGFRECLMLKAGKQDVNVMQALANLGGA FT ASKESLTHALSMKNIRADKVIRACQKKKLIFSMGSQIGSHFQQLQPIKGCTTTIQSSPV FT WLRRPRGSSIVSPQFSEDRVSHLVEMIFGDNFLILDKVTVYVPVYKVSLVAADNSVRIE FT YVHAVTGKPFQDI" FT misc_feature 87348..87401 FT /note="1 probable transmembrane helix predicted for CAB074 FT by TMHMM2.0 at aa 5-22" FT CDS complement(88217..91963) FT /transl_table=11 FT /gene="dnaE" FT /locus_tag="CAB075" FT /product="putative DNA polymerase III alpha subunit" FT /EC_number="2.7.7.7" FT /note="Similar to Chlamydia pneumoniae DNA polymerase III FT alpha subunit DnaE or cpn0666 or cp0081 SWALL:DP3A_CHLPN FT (SWALL:Q9Z7N8) (1240 aa) fasta scores: E(): 0, 76.48% id in FT 1242 aa" FT /db_xref="GOA:Q5L738" FT /db_xref="InterPro:IPR004805" FT /db_xref="UniProtKB/TrEMBL:Q5L738" FT /protein_id="CAH63532.1" FT /translation="MTRGLLVTWIPLHCHSQYSILDATSSIKSFVAKAKEYQIPSLALT FT DHGNLYGAIEFYKECQQNDIKPIIGCEVYVAPSSRFDKKKEKKSRVAHHLILLCKNELG FT YRNLCLLSSLAFTEGFYYFPRIDRELLSQHAEGLICLSACLSSSVAQAALESEEALEKD FT LRWYQNLFGEDFYSEIQLHKMSEEKIASLGEEWLKHEYYQFIDSQTKVNQAVLDASKRL FT GIRSVATNDIHYIHADDWLAHEILLNVQLGETIRIAKQNTYIPNPKRKTFRSREYYFKS FT PEEMARLFADHPETITNTLEVADKCNLHLNLSSKHYPIYVPEFLKSKQNYTEEERYAAS FT AAFLRELCEKGLSTKYTPEKLAHISKKFPDRDPLELVKERLEMEMSIIIPKGMCDYLLI FT VWDIIYWAKDNGIPVGPGRGSGAGSVMLFLLGITEIEPIRFDLFFERFINPERLSYPDI FT DIDICMAGRERVINYAIERHGKDNVAQIITFGTMKAKMAVKDVGRTLDVPLSKVNHIAK FT HIPELNTTLAKALETDPHLNELYTNDAEAAQVIDMAMRLEGSIRNTGVHAAGVIICGDR FT LTNHIPICISKDSTMITTQFSMKPVESVGMLKVDFLGLKTLTSIHIAMRAIEKKTGKLL FT EMASLPLDDKTTFALLHQGKTMGIFQMESKGMQELAKNLRPDSFEEIIAIGALYRPGPM FT DMIPSFINRKHGKEIIEYDHPLMESILKETYGIMVYQEQVMQIAGSLASYSLGEGDVLR FT RAMGKKDIDQMLKERTRFCERARKNGIDAELATTIFDKMEKFASYGFNKSHAAAYGLIT FT YTTAYLKANYPKEWLAALLTSDSDDIEKIGKLIHEAHSMDICILPPDINESGTDFVATD FT KGIRFAMGAIRGIGKGLVESIIEEREKHGPYQSIRDFIQRSDLKKVTKKHTENLIDAGC FT FDVFEPDRDVAQATLESLYDSISKEKKEAATGVMTFFSLNAMHQKHPIPLTPATNVVRR FT SKKDILKKEKELLGIYLTEHPMDAVKDILPRLSVVSPGEFANLPHGAVIRTIFIIDKVT FT TRISSKGQRKFALLRVNDGVDSYELPIWPEMYAEQQDLLEEDRLIYAILSIDKRSESLR FT LSCRWMRDLSLINEDLIQECDDMFDKIKSQMQKMSYLNLETNKDTNQGKTSTMSKSTDH FT RSQAPIVKLSLDLEQLRHSHLCTLKQIIRKYPGSRTLSLVFTKNNERVATISPDADYFV FT SEDTSGLQKDLENSQLPVRFIAV" FT misc_feature complement(89996..90019) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(91241..91693) FT /note="Pfam match to entry PF02811 PHP_C, PHP domain FT C-terminal region , score 136.7, E-value 2.8e-38" FT misc_feature complement(91739..91936) FT /note="Pfam match to entry PF02231 PHP_N, PHP domain FT N-terminal region , score 119.9, E-value 3.2e-33" FT CDS complement(91970..93337) FT /transl_table=11 FT /locus_tag="CAB076" FT /product="putative hexose phosphate transport protein" FT /note="Similar to Chlamydia trachomatis probable hexose FT phosphate transport protein ct544 SWALL:UHPT_CHLTR FT (SWALL:O84548) (456 aa) fasta scores: E(): 1.8e-162, 83.85% FT id in 452 aa, and to Bacillus subtilis glycerol-3-phosphate FT transporter GlpT SWALL:GLPT_BACSU (SWALL:P37948) (444 aa) FT fasta scores: E(): 3.9e-60, 41.11% id in 450 aa" FT /db_xref="GOA:Q5L737" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/TrEMBL:Q5L737" FT /protein_id="CAH63533.1" FT /translation="MNIWTKFFQPPKHIKELDDPELVKKQYKYWRIRIFYSMFIGYVFY FT YFTRKSFTFAMPTLMTDLGFDKAQLGIIGSTLYISYGVSKFVSGVISDQSNPRYFMALG FT LIVTGFTNIFFGMSSSILLFALWWGLNGWFQGWGWPPCARLLTHWYSKSERGTWWSVWS FT TSHNIGGALIPILTGFAIDCCGWRGAMFVPGILCILMGLVLINRLRDTPQSLGLPSIEK FT FRKKQESQKHEETTVDILEEEAEKELSTREILFTYVLKNKWIWLLSFASFFIYVVRMAV FT NDWSALFLIETKRYVAVKANFCVSLFEIGGLFGMLIAGWLSDKISKGKRGPMNVVFSLG FT LLFSILGMWYSRNQDMWWLDGSLLFVIGFFLFGPQMMIGLAAAELSHKKAAGTASGFAG FT WFAYFGAAFAGYPLGKIAQDWGWRGFFIALLGCALIALVLFLPTWNASERSLQTRK" FT misc_feature complement(join(92006..92074,92102..92170,92189..92257, FT 92285..92338,92375..92434,92492..92551,92723..92782, FT 92963..93031,93068..93136,93194..93253)) FT /note="10 probable transmembrane helices predicted for FT CAB076 by TMHMM2.0 at aa 29-48, 68-90, 103-125, 186-205, FT 263-282, 302-321, 334-351, 361-383, 390-412 and 422-444" FT misc_feature complement(92828..92878) FT /note="PS00942 glpT family of transporters signature." FT misc_feature complement(92849..92869) FT /note="PS00340 Growth factor and cytokines receptors family FT signature 2." FT misc_feature complement(93053..93103) FT /note="PS00453 FKBP-type peptidyl-prolyl cis-trans FT isomerase signature 1." FT CDS 93583..93783 FT /transl_table=11 FT /locus_tag="CAB077" FT /product="conserved hypothetical exported protein" FT /note="Similar to Chlamydia pneumoniae hypothetical protein FT cpn0664 or cpj0664 or cp0083 SWALL:Q9Z7P0 (EMBL:AE001649) FT (67 aa) fasta scores: E(): 1.3, 32.14% id in 56 aa. No FT other significant database matches." FT /db_xref="UniProtKB/TrEMBL:Q5L736" FT /protein_id="CAH63534.1" FT /translation="MKRMSVVFISVFLAPIGTGDNKEVRSYETKIWKKILHTYVGEYEF FT PRQEVLEPLFGESFDSHIGRV" FT misc_feature 93583..93639 FT /note="Signal peptide predicted for CAB077 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.625) with cleavage site FT probability 0.513 between residues 19 and 20" FT CDS 93851..95143 FT /transl_table=11 FT /gene="hisS" FT /locus_tag="CAB078" FT /product="putative histidyl-tRNA synthetase" FT /EC_number="6.1.1.21" FT /note="Similar to Chlamydia pneumoniae histidyl-tRNA FT synthetase HisS or cpn0663 or cp0084 SWALL:SYH_CHLPN FT (SWALL:Q9Z7P1) (430 aa) fasta scores: E(): 1.4e-132, 74.18% FT id in 430 aa, and to Escherichia coli, and Escherichia coli FT O157:H7 histidyl-tRNA synthetase HisS SWALL:SYH_ECOLI FT (SWALL:P04804) (423 aa) fasta scores: E(): 1.5e-48, 38.09% FT id in 399 aa." FT /db_xref="GOA:Q5L735" FT /db_xref="InterPro:IPR004516" FT /db_xref="UniProtKB/Swiss-Prot:Q5L735" FT /protein_id="CAH63535.1" FT /translation="MKVALPKGVFDIFPYITDAKHMWRHTSLWHRVEDVIHDVCGLYGF FT SEIRTPVFEKSEVFLHVGEQSDIVKKEMYTFLDKKGRSLTLRPEGTAPIVRSFIDNSMN FT QRDDNKFYYILPMFRYERQQSGRYRQHHQFGVEAIGVRHPLRDAEILALLWHFYSAVGL FT QHMQVQLNFLGGEVTRKRYDKILREYFLDHLSSLSLLSKERFNTNLLRILDSKEPEDQE FT IIQSAPPILDYVSDDDRKYFDEILSALDALNIAYDINPRLVRGLDYYTDLVFEAITTCR FT DHSYALGGGGRYDGLIASSGGPATPACGFGIGLERVIQTLLAQGNFTPLSSHKLRLIPV FT ESQADSFCFVWAQHLRSLGIPTEVDWTHKKLKNALKIADAEKATFVCPVGERELVSEQL FT TVKNMSLRQEFSGSKQEVEQRLLYEIQNTSL" FT misc_feature 93872..94345 FT /note="Pfam match to entry PF00587 tRNA-synt_2b, tRNA FT synthetase class II core domain (G, H, P, S and T) , score FT 149.0, E-value 5.4e-42" FT misc_feature 94832..95122 FT /note="Pfam match to entry PF03129 HGTP_anticodon, FT Anticodon binding domain , score 47.9, E-value 1.5e-11" FT CDS 95118..96872 FT /transl_table=11 FT /gene="aspS" FT /locus_tag="CAB079" FT /product="putative aspartyl-tRNA synthetase" FT /EC_number="6.1.1.12" FT /note="Similar to Chlamydia muridarum aspartyl-tRNA FT synthetase AspS or tc0829 SWALL:SYD_CHLMU (SWALL:Q9PJK0) FT (582 aa) fasta scores: E(): 6.2e-199, 81.61% id in 582 aa, FT and to Escherichia coli aspartyl-tRNA synthetase AspS FT SWALL:SYD_ECOLI (SWALL:P21889) (590 aa) fasta scores: E(): FT 1.6e-100, 46.01% id in 589 aa" FT /db_xref="GOA:Q5L734" FT /db_xref="InterPro:IPR004365" FT /db_xref="UniProtKB/Swiss-Prot:Q5L734" FT /protein_id="CAH63536.1" FT /translation="MKYRTHRCNELSLSNVGERVRLSGWVHRYRNHGGVVFIDLRDRFG FT ITQIVCREDEKPELHQLVDSVRSEWVLSIEGTVCRRLEGMENANLATGEIEVDIEKVDI FT LSKAKNLPFSISDDHIHVNEELRLEYRYLDMRRGQILDRLVHRHKVMMACRQYMDKQGF FT TEVVTPILGKSTPEGARDYLVPSRIYPGSFYALPQSPQLFKQILMVGGLDRYFQIATCF FT RDEDLRADRQPEFAQIDIEMSFGTPNDLFPIIEQLVVEMFAVQGIKIDLPLPRMTYQEA FT KDLYGTDKPDLRFGLQLHDCREHAKEFSFSIFLDQLAQGGTIKGFCVPGGADMSRKQLD FT VYTEFVKRYGAMGLVWIKKQESGIASNVAKFASEAVFQAMFADFGAQNNDILLLIAAPE FT DVANQSLDHLRRLIAKERNFYNEAQYNFVWITDFPLFAKEDGKICSEHHPFTSPLDEDI FT PLLDKDPLSVRSSSYDLVLNGYEIASGSQRIHNADLQNKIFSILELSPESIKEKFDFFI FT DALSFGTPPHLGIALGLDRIMMVLTGAEGIREVIAFPKTQKAADLMMDAPAEIMTSQLK FT ELSIKVTS" FT misc_feature 95136..95201 FT /note="PS00527 Ribosomal protein S14 signature." FT misc_feature 95175..95432 FT /note="Pfam match to entry PF01336 tRNA_anti, OB-fold FT nucleic acid binding domain , score 79.3, E-value 5e-21" FT misc_feature 95484..96791 FT /note="Pfam match to entry PF00152 tRNA-synt_2, tRNA FT synthetases class II (D, K and N) , score 80.5, E-value FT 2.3e-21" FT misc_feature 95781..95834 FT /note="PS00179 Aminoacyl-transfer RNA synthetases class-II FT signature 1." FT misc_feature 96030..96335 FT /note="Pfam match to entry PF02938 GAD, GAD domain , score FT 157.1, E-value 2e-44" FT misc_feature 96708..96737 FT /note="PS00339 Aminoacyl-transfer RNA synthetases class-II FT signature 2." FT CDS 96948..97715 FT /transl_table=11 FT /gene="mip" FT /locus_tag="CAB080" FT /product="putative macrophage infectivity potentiator FT lipoprotein" FT /note="Similar to Chlamydophila caviae Mip protein FT SWALL:Q46176 (EMBL:L39892) (255 aa) fasta scores: E(): FT 3e-77, 87.05% id in 255 aa, and to Chlamydia pneumoniae FT peptidyl-prolyl cis-trans isomerase Mip precursor or FT cpn0661 or cp0086 SWALL:MIP_CHLPN (SWALL:Q9Z7P3) (258 aa) FT fasta scores: E(): 2.6e-63, 72.58% id in 248 aa" FT /db_xref="GOA:Q5L733" FT /db_xref="InterPro:IPR000774" FT /db_xref="UniProtKB/TrEMBL:Q5L733" FT /protein_id="CAH63537.1" FT /translation="MKKQWYLIIITMVVSFSIAACDQSSHNENTKTQVGEESTASDSQL FT SVNQQISRTFGHLLARQLHKSEDIVMDIAEVAKGLQAELECKSAPLTESEYEEKMAEIQ FT QLVFEKKAKENLSLAEKFLQENKKNAGVVEVQADKLQYRIVKEGTGKAISGKPSALLHY FT KGSFINGQVFSSSEANKEPILLPLAQTIPGFSLGMQGMKEGETRILYIHPDLAYGTSGQ FT LPPNSLLIFEINLIETTEDTVALPDTEDKNTAS" FT misc_feature 96948..97007 FT /note="Signal peptide predicted for CAB080 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.995) with cleavage site FT probability 0.916 between residues 20 and 21" FT misc_feature 96978..97010 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 97269..97379 FT /note="Pfam match to entry PF01346 FKBP_N, Domain amino FT terminal to FKBP-type peptidyl-prolyl isomerase , score FT 20.1, E-value 8.3e-05" FT misc_feature 97389..97655 FT /note="Pfam match to entry PF00254 FKBP, FKBP-type FT peptidyl-prolyl cis-trans isomerase , score 109.3, E-value FT 4.8e-30" FT CDS 97712..98182 FT /transl_table=11 FT /locus_tag="CAB081" FT /product="putative rRNA methylase" FT /note="Similar to Chlamydophila caviae SpoU protein FT SWALL:Q46177 (EMBL:L39892) (156 aa) fasta scores: E(): FT 3.1e-56, 91.02% id in 156 aa, and to Chlamydia muridarum FT SpoU rRNA methylase family protein tc0827 SWALL:Q9PJK2 FT (EMBL:AE002349) (151 aa) fasta scores: E(): 1.2e-40, 67.78% FT id in 149 aa" FT /db_xref="GOA:Q5L732" FT /db_xref="InterPro:IPR016914" FT /db_xref="UniProtKB/TrEMBL:Q5L732" FT /protein_id="CAH63538.1" FT /translation="MKVVLYHPDIPQNTGNIGRTCIALGAELILVRPLGFSLLDKFVKR FT AGMDYWDKVNLSVVDSLDEVLFGVDEDKIFCLSTKGAQYYGDVALPMDGVYVFGSESKG FT LPEEVLKKYYNHTYYLPMQPGIRSLNLATTVGVVLFEAVRQNNQSTCIRTGN" FT misc_feature 97712..98131 FT /note="Pfam match to entry PF00588 SpoU_methylase, SpoU FT rRNA Methylase family , score 101.6, E-value 1e-27" FT CDS complement(98179..98487) FT /transl_table=11 FT /gene="trxA" FT /locus_tag="CAB082" FT /product="putative thioredoxin" FT /note="Similar to Chlamydia psittaci thioredoxin TrxA FT SWALL:THIO_CHLPS (SWALL:P52227) (102 aa) fasta scores: E(): FT 6.4e-35, 90.19% id in 102 aa, and to Oenococcus oeni FT thioredoxin TrxA SWALL:Q8RKA7 (EMBL:X93091) (104 aa) fasta FT scores: E(): 2.3e-13, 39% id in 100 aa" FT /db_xref="GOA:Q5L731" FT /db_xref="InterPro:IPR012335" FT /db_xref="UniProtKB/TrEMBL:Q5L731" FT /protein_id="CAH63539.1" FT /translation="MVKVVSAENFNSFIASGLVLIDFFAEWCGPCKMLAPVLESLATEV FT PSVLIGKVNIDDSPAPAEQYGVSSIPTLILFKDGKEVDRTVGLKDKDALIKLINQHA" FT misc_feature complement(98182..98484) FT /note="Pfam match to entry PF00085 thiored, Thioredoxin , FT score 140.1, E-value 2.6e-39" FT misc_feature complement(98374..98430) FT /note="PS00194 Thioredoxin family active site." FT tRNA complement(98529..98612) FT /gene="tRNA-Leu" FT /product="transfer RNA-Leu" FT /note="anticodon CAG, Cove score 57.86" FT CDS 99612..100334 FT /transl_table=11 FT /locus_tag="CAB083" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae protein cpn0658 or FT cp0089 or cpj0658 SWALL:Y658_CHLPN (SWALL:Q9Z7P6) (238 aa) FT fasta scores: E(): 3e-80, 86.55% id in 238 aa. Only FT significant full-length database matches are to predicted FT Chlamydiaceae proteins." FT /db_xref="UniProtKB/TrEMBL:Q5L730" FT /protein_id="CAH63540.1" FT /translation="MSMNISGSIKQKLLQFLGKQKAPELLATYLFYLEQALNINPVVFV FT RDKIIFKTPEDAIRILEEDKKVWRETEIQICSGKPEVNEQTKRIYICPFTGKVFADNVY FT ADPQDAIYDWLSSCPQNTERQSGVRVKRFLVSDDPNMIKEYIAPPKEPIVKTVFASAIT FT GKLFHSLPALIEDFTSSYLRPMTLEEVQNQNKFQLEGTFLSLLQDALVEDKIAEFIESL FT ADDTAFHVYISQWVDTEE" FT CDS 100313..100774 FT /transl_table=11 FT /locus_tag="CAB084" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae YjeE hypothetical FT protein cpn0657 or cp0090 SWALL:Q9Z7P7 (EMBL:AE001648) (141 FT aa) fasta scores: E(): 3.2e-34, 63.12% id in 141 aa." FT /db_xref="InterPro:IPR003442" FT /db_xref="UniProtKB/TrEMBL:Q5L729" FT /protein_id="CAH63541.1" FT /translation="MGRYRRVTNSSQETIDIGAELGKILPQGVVLLLFGDYGSGKTEFV FT RGVVQGYLGDALAQEVASPSFSLLHVYGNEPRRICHYDFYRIDAIKGNQTDFFQDADED FT DILCVEWPERITLPQFREMIQVQIQPLTTVQREVSIDAPPSILLKLLKE" FT misc_feature 100352..100726 FT /note="Pfam match to entry PF02367 UPF0079, Uncharacterised FT P-loop hydrolase UPF0079 , score 165.7, E-value 4.9e-47" FT misc_feature 100415..100438 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 100784..101533 FT /transl_table=11 FT /gene="dnaF" FT /gene_synonym="dnaQ_2" FT /gene_synonym="polC" FT /locus_tag="CAB085" FT /product="putative DNA polymerase III epsilon chain" FT /note="Similar to Chlamydia pneumoniae DNA polymerase III FT epsilon chain DnaQ_2 or cpn0655 or cp0092 SWALL:Q9Z7P9 FT (EMBL:AE001648) (249 aa) fasta scores: E(): 2.9e-86, 87.55% FT id in 249 aa, and to Bacillus subtilis DNA polymerase III FT PolC-type or DnaF or MutI SWALL:DPO3_BACSU (SWALL:P13267) FT (1437 aa) fasta scores: E(): 1.4e-10, 32.7% id in 159 aa" FT /db_xref="GOA:Q5L728" FT /db_xref="InterPro:IPR013520" FT /db_xref="UniProtKB/TrEMBL:Q5L728" FT /protein_id="CAH63542.1" FT /translation="MTLLKDTVFVCLDCEMTGLDVKKDRIIEFAAIRFTFDSVIDSMET FT LINPDRVISAESQRIHHISDAMLKDQPRIAEVFPKIKSFLKEGDYIVGHSVGFDLQVLS FT QEAERIGETFLSKYYIIDTLRLAKEYGDSPNNSLEALAVHFNVPYDGNHRAMKDVEINI FT SIFKHFCKRFRTIEQLKQMLSKPIKMKYMPLGKHKGRCFSEIPLSYLQWASKMDFDPDL FT LFSIRHEIKHRQKGIGFTQVNNPFIGL" FT misc_feature 100808..101305 FT /note="Pfam match to entry PF00929 Exonuclease, Exonuclease FT , score 193.6, E-value 2e-55" FT CDS 101692..102162 FT /transl_table=11 FT /locus_tag="CAB086" FT /product="putative acyl-coA thioester hydrolase" FT /note="Similar to Chlamydia pneumoniae putative acyl-coA FT thioester hydrolase cpn0654 or cp0093 or cpj0654 FT SWALL:Y654_CHLPN (SWALL:Q9Z7Q0) (155 aa) fasta scores: E(): FT 3.9e-58, 89.61% id in 154 aa, and to Bacillus subtilis FT putative acyl-coA thioester hydrolase YkhA SWALL:YKHA_BACSU FT (SWALL:P49851) (179 aa) fasta scores: E(): 2.2e-15, 37.01% FT id in 154 aa" FT /db_xref="GOA:Q5L727" FT /db_xref="InterPro:IPR006683" FT /db_xref="UniProtKB/TrEMBL:Q5L727" FT /protein_id="CAH63543.1" FT /translation="MLKKKPVSFSCIDGHIYKIFPNDLNANNTVFGGLLMSLLDRLALV FT VAERHAERICVTAFVDALCFYAPAYMGENLICKAAVNRTWKTSLEVGVKVWAENIYKQE FT RRHITSAYFTFVSVDQNNAPTPVHQVVPETPEEKRRYDEADQRRQARLNMNK" FT misc_feature 101692..102075 FT /note="Pfam match to entry PF01662 Acyl-CoA_hydro, FT Cytosolic long-chain acyl-CoA thioester hydrolase , score FT 88.7, E-value 7.9e-24" FT misc_feature 101875..101922 FT /note="PS00225 Crystallins beta and gamma 'Greek key' motif FT signature." FT CDS 102170..103795 FT /transl_table=11 FT /locus_tag="CAB087" FT /product="conserved hypothetical lipoprotein" FT /note="Similar to Chlamydia pneumoniae apolipoprotein FT N-acyltransferase Lnt or cutE or cpn0653 or cp0094 FT SWALL:LNT_CHLPN (SWALL:Q9Z7Q1) (541 aa) fasta scores: E(): FT 2.8e-131, 58.22% id in 541 aa, and to Escherichia coli FT apolipoprotein N-acyltransferase Lnt or CutE FT SWALL:LNT_ECOLI (SWALL:P23930) (512 aa) fasta scores: E(): FT 2.8e-05, 21.42% id in 518 aa" FT /db_xref="GOA:Q5L726" FT /db_xref="InterPro:IPR003010" FT /db_xref="UniProtKB/TrEMBL:Q5L726" FT /protein_id="CAH63544.1" FT /translation="MFRILSFFCSWILIAFAQPDLSWFFSLLGSAIGYGLLWYSLEPQK FT PPYLSWKYLTFLLFLWSATIHGVHFSWMLSDVYVGKFIYIVWGVLTSLLALLFTAFSSL FT LLYAVRKNHGKILWCLPGLWIAIEMVRFYYFCSGMSLDYLGWPMTASAYGRQFGGFFGW FT SGESFFVVATGISFYQVLLKKPFARFAWSGCLLLPYVFGGLHYEYLKSTFSNEENLHVA FT VVQPASSTLLEGAWSGSPAMAWRRLISLSSVVRKPVDLLIFPEVAVPFGRDRKIYPYHE FT SEIILSLLTHFKYQDGLLTNIDWMQALSNHFDCPILMGLERWEERESQLHLYNAAECIS FT QHGELIGYDKRVLVPGGEYIPGGKLGWAVCKKYFPEYALSCQRLPGTRSGVIEINHLPK FT IGVSICYEETFGSLLRNYKNEGAKLLVNLTNDGWYPSSRLPQVHFYHGILRNQELGMPC FT VRSCHTGVTVAADALGRIIKMLPYETCSRKASPGVLQVALPLQNYSTLYALWGDLPMIL FT LSLLSIGCIGCYFGYRLLAKKEKG" FT misc_feature 102170..102220 FT /note="Signal peptide predicted for CAB087 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.965 between residues 17 and 18" FT misc_feature join(102233..102292,102311..102379,102422..102490, FT 102515..102574,102647..102715,102734..102787, FT 103706..103774) FT /note="7 probable transmembrane helices predicted for FT CAB087 by TMHMM2.0 at aa 22-41, 48-70, 85-107, 116-135, FT 160-182, 189-206 and 513-535" FT misc_feature 102821..103720 FT /note="Pfam match to entry PF00795 CN_hydrolase, FT Carbon-nitrogen hydrolase , score -95.1, E-value 0.0014" FT CDS 103810..104667 FT /transl_table=11 FT /gene="lpxC" FT /gene_synonym="envA" FT /locus_tag="CAB088" FT /product="putative udp-3-o-[3-hydroxymyristoyl] FT N-acetylglucosamine deacetylase" FT /note="Similar to Chlamydia pneumoniae FT udp-3-o-[3-hydroxymyristoyl] N-acetylglucosamine FT deacetylase LpxC or cpn0652 or cp0095 SWALL:LPXC_CHLPN FT (SWALL:Q9Z7Q2) (282 aa) fasta scores: E(): 2.3e-91, 78.64% FT id in 281 aa, and to Escherichia coli, and Escherichia coli FT O157:H7 udp-3-o-[3-hydroxymyristoyl] N-acetylglucosamine FT deacetylase LpxC or EnvA or AsmB SWALL:LPXC_ECOLI FT (SWALL:P07652) (305 aa) fasta scores: E(): 1.9e-29, 35.74% FT id in 277 aa" FT /db_xref="GOA:Q5L725" FT /db_xref="InterPro:IPR015870" FT /db_xref="UniProtKB/Swiss-Prot:Q5L725" FT /protein_id="CAH63545.1" FT /translation="MSGFCMLERAQRTLRREVRYSGVGIHFGKSATITLEPAKENTGIV FT FCRSDLLGEHIPALLPHVCNTGRSTTLSSGDSIIATVEHLMAALRSSNIDNVIVRCDEE FT EIPIGDGSSHVFMQLIHDAGVCTQNDKVSIARLSQPVYYQAQDTFLAAFPCDELKISYT FT LHYPQSPTIGTQYRSFVITEESFRKEIAPCRTFALYNELCFLMERGLIGGGCLENAVVF FT KDDGVISLGQLRFPDEPVRHKILDLIGDLSLVGRPFVAHIVAVGSGHSSNIALGRKILE FT VLQP" FT misc_feature 103828..104661 FT /note="Pfam match to entry PF03331 LpxC, UDP-3-O-acyl FT N-acetylglycosamine deacetylase , score 571.5, E-value FT 3.6e-169" FT CDS 104682..105146 FT /transl_table=11 FT /gene="fabZ" FT /locus_tag="CAB089" FT /product="(3r)-hydroxymyristoyl-[acyl carrier protein] FT dehydratase" FT /note="Similar to Chlamydia pneumoniae FabZ or cpn0651 or FT cp0096 SWALL:FABZ_CHLPN (SWALL:Q9Z7Q3) (153 aa) fasta FT scores: E(): 6.8e-47, 81.69% id in 153 aa, and to FT Escherichia coli, and Escherichia coli O157:H7 FabZ or SefA FT SWALL:FABZ_ECOLI (SWALL:P21774) (151 aa) fasta scores: E(): FT 1.6e-17, 42.85% id in 140 aa" FT /db_xref="GOA:Q5L724" FT /db_xref="InterPro:IPR010084" FT /db_xref="UniProtKB/Swiss-Prot:Q5L724" FT /protein_id="CAH63546.1" FT /translation="MKESPVIKLRELLNLLPHRYPFLLVDKVLSYDLERRSIVAQKNVT FT INEPFFVGHFPEAPIMPGVLILESLAQAAGVLLGLVLENDRNKRLALFLGIHKAKFRQA FT VKPGDILTLSAEFSLISSKGGKASARACVGSQVAAEGELSFALVDKKSLD" FT misc_feature 104700..105101 FT /note="Pfam match to entry PF01377 Thioester_dehyd, FT Thioester dehydrase , score 154.9, E-value 8.8e-44" FT CDS 105156..105995 FT /transl_table=11 FT /gene="lpxA" FT /locus_tag="CAB090" FT /product="putative udp-n-acetylglucosamine acyltransferase" FT /note="Similar to Chlamydia pneumoniae FT acyl-[acyl-carrier-protein]-udp-N-acetylglucosamine FT O-acyltransferase LpxA or cpn0650 or cp0097 FT SWALL:LPXA_CHLPN (SWALL:Q9Z7Q4) (279 aa) fasta scores: E(): FT 2e-96, 84.94% id in 279 aa, and to Escherichia coli FT acyl-[acyl-carrier-protein]-udp-N-acetylglucosamine FT O-acyltransferase LpxA SWALL:LPXA_ECOLI (SWALL:P10440) (262 FT aa) fasta scores: E(): 1.9e-37, 45.31% id in 256 aa" FT /db_xref="GOA:Q5L723" FT /db_xref="InterPro:IPR010137" FT /db_xref="UniProtKB/Swiss-Prot:Q5L723" FT /protein_id="CAH63547.1" FT /translation="MTNIHPTAIIEPGAKIGRNVVIEPYVVIKSTVTLCDDVVVKSYAY FT IDGYTTIGRGTTIWPSAMIGNKPQDLKYQGEKTYVTIGENCEIREFAIITSSTFEGTTV FT SIGNNCLIMPWAHVAHNCTIGNHVVLSNHAQLAGHVVVEDYAIIGGMVGVHQFVRIGAH FT AMVGALSGVRRDVPPYTIGTGNPYQLGGINKVGLQRRQVGFEIRLALIKVFKKVYRSED FT GFFEALLEAQEEYGHIPEVQNFIHFCRNPSKRGIERGAAKEAFQEESVDKEGALVES" FT misc_feature 105174..105227 FT /note="Pfam match to entry PF00132 hexapep, Bacterial FT transferase hexapeptide (four repeats) , score 16.3, FT E-value 0.049" FT misc_feature 105228..105281 FT /note="Pfam match to entry PF00132 hexapep, Bacterial FT transferase hexapeptide (four repeats) , score 5.1, E-value FT 11" FT misc_feature 105300..105353 FT /note="Pfam match to entry PF00132 hexapep, Bacterial FT transferase hexapeptide (four repeats) , score 17.3, FT E-value 0.024" FT misc_feature 105390..105443 FT /note="Pfam match to entry PF00132 hexapep, Bacterial FT transferase hexapeptide (four repeats) , score 16.2, FT E-value 0.053" FT misc_feature 105462..105515 FT /note="Pfam match to entry PF00132 hexapep, Bacterial FT transferase hexapeptide (four repeats) , score 19.3, FT E-value 0.0061" FT misc_feature 105516..105569 FT /note="Pfam match to entry PF00132 hexapep, Bacterial FT transferase hexapeptide (four repeats) , score 14.3, FT E-value 0.19" FT misc_feature 105525..105611 FT /note="PS00101 Hexapeptide-repeat containing-transferases FT signature." FT misc_feature 105588..105641 FT /note="Pfam match to entry PF00132 hexapep, Bacterial FT transferase hexapeptide (four repeats) , score 15.1, FT E-value 0.11" FT CDS 105985..106950 FT /transl_table=11 FT /gene="fmt" FT /locus_tag="CAB091" FT /product="putative methionyl-tRNA formyltransferase" FT /note="Similar to Chlamydia pneumoniae methionyl-tRNA FT formyltransferase Fmt or cpn0649 or cp0098 SWALL:FMT_CHLPN FT (SWALL:Q9Z7Q5) (321 aa) fasta scores: E(): 6.6e-88, 70.53% FT id in 319 aa, and to Escherichia coli methionyl-tRNA FT formyltransferase Fmt SWALL:FMT_ECOLI (SWALL:P23882) (314 FT aa) fasta scores: E(): 7.1e-38, 41.17% id in 306 aa" FT /db_xref="GOA:Q5L722" FT /db_xref="InterPro:IPR015518" FT /db_xref="UniProtKB/Swiss-Prot:Q5L722" FT /protein_id="CAH63548.1" FT /translation="MSLKIVYFGTPQFAATVLADLLHHEVNVVAVVTRVDKPQKRSSQL FT IPSPVKTLALSKNIPLLQPEKVSDPQFVEQLRDFEADVFIVVAYGAILKQMVLDIPKYG FT CYNLHAGLLPAYRGAAPIQRCIMDGVVQSGNTVIRMDAGMDTGDIANVSFVPVGPDMTA FT GELAEALASQGGEILIKTLQQISDGTITHTPQEASKASIAPKLSKEEGFILWDHPAEKV FT YAQIRGVTPAPGAWTLYSYQGKPARRLVIRKASLSSSQGVYGHPGDILLSDQQELLVAC FT AEGAICLKEIQPEGKGVMDSKSFLNGHSGHKLKLSLNLMS" FT misc_feature 105991..106530 FT /note="Pfam match to entry PF00551 formyl_transf, Formyl FT transferase , score 140.0, E-value 2.8e-39" FT misc_feature 106600..106911 FT /note="Pfam match to entry PF02911 formyl_trans_C, Formyl FT transferase, C-terminal domain , score 135.1, E-value FT 8.4e-38" FT CDS 107060..108034 FT /transl_table=11 FT /locus_tag="CAB092" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae ct529 hypothetical FT protein cpn0648 or cpj0648 or cp0099 SWALL:Q9Z7Q6 FT (EMBL:AE001648) (333 aa) fasta scores: E(): 2.4e-43, 43.47% FT id in 299 aa. Only significant full-length database matches FT are to predicted Chlamydiaceae proteins." FT /db_xref="UniProtKB/TrEMBL:Q5L721" FT /protein_id="CAH63549.1" FT /translation="MASVTPQVAALAMGGRNVFIQTAMQKTRRGVAGNCVKMFCTRRDN FT HLARFVGSTKNLDKAFKFAKSVSEFSCGVIESSGNTGASLETARNVAGTLGTARSVVAL FT SNVFNGAIPGCISSSKNCFAHIKKCFTPESHYDLGNAEKGLPYNKIYLTKGDHALAAIK FT EGCSAVGAATYIGTFGVCRPVLLANKLAHKPFLPKDVKTGFGDAVTYMMTANHAASVIG FT GAASLMYENRAYQRASAGLEDARIAETLTVDVYNQVSQELRESHLAVVKKTILAILEKA FT FELIADVVKLIPFPTTASVRLAVTSGAVVISSGIGLYSAWAHS" FT CDS 108328..108993 FT /transl_table=11 FT /gene="rplC" FT /locus_tag="CAB093" FT /product="putative 50s ribosomal protein" FT /note="Similar to Chlamydia pneumoniae 50S ribosomal FT protein l3 Rplc or Rl3 or cpn0647 or cp0100 SWALL:RL3_CHLPN FT (SWALL:Q9Z7Q7) (219 aa) fasta scores: E(): 3.5e-63, 76.14% FT id in 218 aa, and to Escherichia coli, and Escherichia coli FT O157:H7 50S ribosomal protein L3 Rplc SWALL:RL3_ECOLI FT (SWALL:P02386) (209 aa) fasta scores: E(): 1.9e-27, 43.11% FT id in 218 aa" FT /db_xref="GOA:Q5L720" FT /db_xref="InterPro:IPR019926" FT /db_xref="UniProtKB/Swiss-Prot:Q5L720" FT /protein_id="CAH63550.1" FT /translation="MQSQLSLMGKKEGMIHVFDKDGNLVACSVISMSSNVVTQIKVDST FT DGYNAIQMGANEINVPEKTLHKRVNKPSIGHFKKSGSRVFRELKEVRLSEEAVNEVSLG FT SEFGLEVFESVSSIDVSGVSKGKGFQGVMKRFGFRGGPQSHGSGFHRHAGSIGMRSTPG FT RCFPGSKRPSHMGTVNVTVKNLEVIKIDLEKKVLLVKGAIPGPRGSVVVVRRSSRAKG" FT misc_feature 108358..108969 FT /note="Pfam match to entry PF00297 Ribosomal_L3, Ribosomal FT protein L3 , score 198.9, E-value 5.3e-57" FT misc_feature 108661..108732 FT /note="PS00474 Ribosomal protein L3 signature." FT CDS 109010..109684 FT /transl_table=11 FT /gene="rplD" FT /locus_tag="CAB094" FT /product="putative 50S ribosomal protein l4" FT /note="Similar to Chlamydia pneumoniae 50S ribosomal FT protein l4 RplD or Rl4 or cpn0646 or cp0101 SWALL:RL4_CHLPN FT (SWALL:Q9Z7Q8) (224 aa) fasta scores: E(): 3e-72, 77.23% id FT in 224 aa" FT /db_xref="GOA:Q5L719" FT /db_xref="InterPro:IPR013005" FT /db_xref="UniProtKB/Swiss-Prot:Q5L719" FT /protein_id="CAH63551.1" FT /translation="MVLLSKFDFFGNKAGEVELPDAFFAQEGSGLQLVKDYLVAIRANK FT RQWSACTRNRSEVSHSTKKPFRQKGTGNARQGCLAAPQFRGGGIVFGPKPKFDQHVRIN FT KKEKRAAIRLLLSQKIQTNHLIVADDSVFTNSLTSPKTKEALRFLKSCNVECRGVLFID FT DLEHAQNNESLRLSLRNLPAVRGFTYGMNINGYDLVSARNIVISEKALNRLSGHLISAM FT KD" FT misc_feature 109052..109660 FT /note="Pfam match to entry PF00573 Ribosomal_L4, Ribosomal FT protein L4/L1 family , score 234.2, E-value 1.2e-67" FT CDS 109701..110036 FT /transl_table=11 FT /gene="rplW" FT /locus_tag="CAB095" FT /product="putative 50S ribosomal protein l23" FT /note="Similar to Chlamydia muridarum 50S ribosomal protein FT l23 RplW or tc0813 SWALL:RL23_CHLMU (SWALL:Q9PJL6) (111 aa) FT fasta scores: E(): 1.2e-35, 78.37% id in 111 aa" FT /db_xref="GOA:Q5L718" FT /db_xref="InterPro:IPR013025" FT /db_xref="UniProtKB/Swiss-Prot:Q5L718" FT /protein_id="CAH63552.1" FT /translation="MKDPYDVIKRHYVTEKAKTLEGLSLGNGEGKKKGSYCKHPKYTFI FT VDSNATKPLIAQALESIYADKKVKVKSVNTICVKPQPARMFRGKRKGKTAGFKKAVVTF FT YEGHSIG" FT misc_feature 109710..109739 FT /note="PS00215 Mitochondrial energy transfer proteins FT signature." FT misc_feature 109713..110030 FT /note="Pfam match to entry PF00276 Ribosomal_L23, Ribosomal FT protein L23 , score 22.4, E-value 5.6e-05" FT CDS 110058..110912 FT /transl_table=11 FT /gene="rplB" FT /locus_tag="CAB096" FT /product="putative 50S ribosomal protein l2" FT /note="Similar to Chlamydia trachomatis 50S ribosomal FT protein l2 RplB or Rl2 or ct525 SWALL:RL2_CHLTR FT (SWALL:O84530) (284 aa) fasta scores: E(): 2.8e-108, 89.78% FT id in 284 aa, and to Escherichia coli, and Escherichia coli FT O157:H7 50S ribosomal protein l2 RplB SWALL:RL2_ECOLI FT (SWALL:P02387) (272 aa) fasta scores: E(): 9.8e-57, 54.8% FT id in 281 aa" FT /db_xref="GOA:Q5L717" FT /db_xref="InterPro:IPR014722" FT /db_xref="UniProtKB/Swiss-Prot:Q5L717" FT /protein_id="CAH63553.1" FT /translation="MFKKFKPVTPGTRQLVLPAFDELTTQGELSGKKTRKSVRPNKKLS FT FFKKSSGGRDNLGHISCRHRGGGAKRLYRVIDFKRNKDGIEAKVVSVEYDPNRSAYIAL FT LSYADGEKRYILAPKGIKRGDQVISGEGSPFKLGCCMTLKSMPLGSTVHNIEMRPHSGG FT KLVRSAGLAAQVIAKTPGYVTLKMPSGEFRMLNEGCRATIGEVSNSDHNLCVDGKAGRK FT RWKGIRPTVRGTAMNPVDHPHGGGEGRHNGYIPRTPWGKVTKGLKTRDKRKSNKWIVKD FT RRK" FT misc_feature 110214..110444 FT /note="Pfam match to entry PF00181 Ribosomal_L2, Ribosomal FT Proteins L2, RNA binding domain , score 162.2, E-value FT 5.8e-46" FT misc_feature 110460..110843 FT /note="Pfam match to entry PF03947 Ribosomal_L2_C, FT Ribosomal Proteins L2, C-terminal domain , score 269.9, FT E-value 2.2e-78" FT misc_feature 110742..110777 FT /note="PS00467 Ribosomal protein L2 signature." FT CDS 110918..111184 FT /transl_table=11 FT /gene="rpsS" FT /locus_tag="CAB097" FT /product="putative 30S ribosomal protein s19" FT /note="Similar to Chlamydia pneumoniae 30S ribosomal FT protein s19 RpsS or Rs19 or cpn0643 or cp0104 FT SWALL:RS19_CHLPN (SWALL:Q9Z7R1) (88 aa) fasta scores: E(): FT 2.7e-34, 95.45% id in 88 aa" FT /db_xref="GOA:Q5L716" FT /db_xref="InterPro:IPR005732" FT /db_xref="UniProtKB/Swiss-Prot:Q5L716" FT /protein_id="CAH63554.1" FT /translation="MSRSLRKGPFVDHSLIKKVRAMNLLEKKTPIKTWSRRSMITPEMI FT GHTFEVHNGKKFLTVFVSETMVGHKLGEFSPTRIFKSHPVKKG" FT misc_feature 110924..111166 FT /note="Pfam match to entry PF00203 Ribosomal_S19, Ribosomal FT protein S19 , score 157.0, E-value 2.2e-44" FT misc_feature 111074..111148 FT /note="PS00323 Ribosomal protein S19 signature." FT CDS 111203..111538 FT /transl_table=11 FT /gene="rplV" FT /locus_tag="CAB098" FT /product="putative 50S ribosomal protein l22" FT /note="Similar to Chlamydia pneumoniae 50S ribosomal FT protein l22 RplV or Rl22 or cpn0642 or cp0105 FT SWALL:RL22_CHLPN (SWALL:Q9Z7R2) (111 aa) fasta scores: E(): FT 6.5e-37, 90.09% id in 111 aa, and to Escherichia coli, FT Escherichia coli O157:H7, Salmonella typhimurium, and FT Salmonella typhi 50S ribosomal protein l22 RplV or EryB FT SWALL:RL22_ECOLI (SWALL:P02423) (110 aa) fasta scores: E(): FT 3.4e-11, 41.5% id in 106 aa" FT /db_xref="GOA:Q5L715" FT /db_xref="InterPro:IPR005727" FT /db_xref="UniProtKB/Swiss-Prot:Q5L715" FT /protein_id="CAH63555.1" FT /translation="MFKATARYIRVQPRKARLAAGLMRNLSVTEAQQQLSFSQLKAGRC FT LKKVLDSAVANAELHDNVKREKLNVIEVRVDAGPVYKRAKSKSRGGRSPILKRTSHLTV FT IVGEKER" FT misc_feature 111212..111526 FT /note="Pfam match to entry PF00237 Ribosomal_L22, Ribosomal FT protein L22p/L17e , score 83.3, E-value 3.2e-22" FT CDS 111547..112218 FT /transl_table=11 FT /gene="rpsC" FT /locus_tag="CAB099" FT /product="30S ribosomal protein s3" FT /note="Similar to Chlamydia pneumoniae 30S ribosomal FT protein s3 RpsC or Rs3 or cpn0641 or cp0106 SWALL:RS3_CHLPN FT (SWALL:Q9Z7R3) (223 aa) fasta scores: E(): 8.5e-76, 92.27% FT id in 220 aa, and to Escherichia coli, Escherichia coli FT O157:H7, Salmonella typhimurium, and Salmonella typhi 30S FT ribosomal protein s3 RpsC SWALL:RS3_ECOLI (SWALL:P02352) FT (232 aa) fasta scores: E(): 2.2e-40, 55.12% id in 205 aa" FT /db_xref="GOA:Q5L714" FT /db_xref="InterPro:IPR008282" FT /db_xref="UniProtKB/Swiss-Prot:Q5L714" FT /protein_id="CAH63556.1" FT /translation="MGQKGCPIGFRTGVTKKWRSLWYGNKQEFGKFLIEDVKIREFLRK FT KPSCQGAAGFVVRRMSGKIEVTIQTARPGLVIGKKGAEVDLLKEELRKLTGKEVWVEIA FT EIKRPELNAKLVADNIARQIERRVSFRRAMKKAMQSVMDAGAVGVKIQVSGRLAGAEIA FT RSEWYKNGRVPLHTLRADIDYAAASAATTYGIIGVKVWINLGEKASTASSNVGTAAPVV FT Q" FT misc_feature 111547..111732 FT /note="Pfam match to entry PF00417 Ribosomal_S3_N, FT Ribosomal protein S3, N-terminal domain , score 60.7, FT E-value 2e-15" FT misc_feature 111739..111882 FT /note="Pfam match to entry PF00013 KH, KH domain , score FT 28.3, E-value 1.1e-05" FT misc_feature 111901..112152 FT /note="Pfam match to entry PF00189 Ribosomal_S3_C, FT Ribosomal protein S3, C-terminal domain , score 178.0, FT E-value 1e-50" FT misc_feature 112033..112137 FT /note="PS00548 Ribosomal protein S3 signature." FT CDS 112248..112661 FT /transl_table=11 FT /gene="rplP" FT /locus_tag="CAB100" FT /product="putative 50S ribosomal protein l16" FT /note="Similar to Chlamydia muridarum 50S ribosomal protein FT l16 RplP or tc0808 SWALL:RL16_CHLMU (SWALL:Q9PJM1) (138 aa) FT fasta scores: E(): 8.3e-54, 95.62% id in 137 aa, and to FT Bacillus subtilis 50S ribosomal protein l16 RplP FT SWALL:RL16_BACSU (SWALL:P14577) (144 aa) fasta scores: E(): FT 4.7e-32, 60% id in 135 aa" FT /db_xref="GOA:Q5L713" FT /db_xref="InterPro:IPR000114" FT /db_xref="UniProtKB/Swiss-Prot:Q5L713" FT /protein_id="CAH63557.1" FT /translation="MMPKRTKFRKQQKGQFAGLSKGATFVDFGEFGMQTLERGWVTSRQ FT IEACRIAINRYLKRRGKVWIRIFPDKSVTKKPAETRMGKGKGAPDHWVAVVRPGRILFE FT VANVSREDAQDALRRAAAKLGIRTRFVKRVERV" FT misc_feature 112248..112640 FT /note="Pfam match to entry PF00252 Ribosomal_L16, Ribosomal FT protein L16 , score 269.5, E-value 2.9e-78" FT misc_feature 112419..112454 FT /note="PS00586 Ribosomal protein L16 signature 1." FT misc_feature 112488..112523 FT /note="PS00701 Ribosomal protein L16 signature 2." FT CDS 112668..112886 FT /transl_table=11 FT /gene="rpmC" FT /locus_tag="CAB100A" FT /product="50s ribosomal protein l29" FT /note="Similar to Chlamydophila caviae 50s ribosomal FT protein l29 rpmc or cca00101 SWALL:RL29_CHLCV FT (SWALL:Q824P3) (72 aa) fasta scores: E(): 3.9e-22, 88.88% FT id in 72 aa" FT /db_xref="GOA:Q5L712" FT /db_xref="InterPro:IPR018254" FT /db_xref="UniProtKB/Swiss-Prot:Q5L712" FT /protein_id="CAH63558.1" FT /translation="MSVKKKLLAELRQKSLVELDAFIHENKKALFSLRAEAALQNKAVK FT THLFSMYKKTIARSMTVKQEKEGKVDG" FT CDS 112879..113130 FT /transl_table=11 FT /gene="rpsQ" FT /locus_tag="CAB101" FT /product="putative 30S ribosomal protein s17" FT /note="Similar to Chlamydia muridarum 30S ribosomal protein FT s17 RpsQ or tc0806 SWALL:RS17_CHLMU (SWALL:Q9PJM3) (83 aa) FT fasta scores: E(): 2.8e-24, 81.92% id in 83 aa" FT /db_xref="GOA:Q5L711" FT /db_xref="InterPro:IPR019979" FT /db_xref="UniProtKB/Swiss-Prot:Q5L711" FT /protein_id="CAH63559.1" FT /translation="MASEVRGLRKTKIGVVVSSKMDKTVVVRVERIYSHPQYAKVVRDS FT RKFYAHDGLGVSEGDKVKIQETRPLSKLKRWRVVERVS" FT misc_feature 112918..113121 FT /note="Pfam match to entry PF00366 Ribosomal_S17, Ribosomal FT protein S17 , score 114.4, E-value 1.4e-31" FT misc_feature 113053..113091 FT /note="PS00056 Ribosomal protein S17 signature." FT CDS 113165..113533 FT /transl_table=11 FT /gene="rplN" FT /locus_tag="CAB102" FT /product="putative 50S ribosomal protein l14" FT /note="Similar to Chlamydia pneumoniae 50S ribosomal FT protein l14 RplN or Rl14 or cpn0637 or cp0110 FT SWALL:RL14_CHLPN (SWALL:Q9Z7R7) (122 aa) fasta scores: E(): FT 2.9e-44, 91.8% id in 122 aa, and to Bacillus subtilis 50S FT ribosomal protein l14 RplN SWALL:RL14_BACSU (SWALL:P12875) FT (122 aa) fasta scores: E(): 1.4e-27, 62.29% id in 122 aa" FT /db_xref="GOA:Q5L710" FT /db_xref="InterPro:IPR019972" FT /db_xref="UniProtKB/Swiss-Prot:Q5L710" FT /protein_id="CAH63560.1" FT /translation="MIQQESQLKVADNTGAKRVKCFKVLGGSRRRYATVGDVIVCSVRD FT VEPDSSVKKGDVVKAVIVRTRRNILRKDGSSLKFDTNSCVIIDEKGNPKGTRIFGPIAR FT EIRDRGFVKISSLAPEVI" FT misc_feature 113165..113530 FT /note="Pfam match to entry PF00238 Ribosomal_L14, Ribosomal FT protein L14p/L23e , score 271.2, E-value 8.8e-79" FT misc_feature 113342..113422 FT /note="PS00049 Ribosomal protein L14 signature." FT CDS 113548..113889 FT /transl_table=11 FT /gene="rplX" FT /locus_tag="CAB103" FT /product="putative 50S ribosomal protein l24" FT /note="Similar to Chlamydia trachomatis 50S ribosomal FT protein l24 RplX or rl24 or ct517 SWALL:RL24_CHLTR FT (SWALL:P28537) (111 aa) fasta scores: E(): 3.4e-34, 84.95% FT id in 113 aa, and to Bacillus subtilis 50S ribosomal FT protein l24 RplX SWALL:RL24_BACSU (SWALL:P12876) (103 aa) FT fasta scores: E(): 6.4e-09, 43.15% id in 95 aa" FT /db_xref="GOA:Q5L709" FT /db_xref="InterPro:IPR005825" FT /db_xref="UniProtKB/Swiss-Prot:Q5L709" FT /protein_id="CAH63561.1" FT /translation="MKRRSVCVGDTVYVLAGNDKGKQGKVLSCLREKNKVVVEGVNVRT FT KNIKRSQENPKGKRINIEAPIHISNVRLSIDGAPAKLSVKVTENGRELWNKSSDGTSKL FT YRSVKERKG" FT misc_feature 113563..113664 FT /note="Pfam match to entry PF00467 KOW, KOW motif , score FT 44.2, E-value 1.9e-10" FT misc_feature 113572..113625 FT /note="PS01108 Ribosomal protein L24 signature." FT CDS 113891..114433 FT /transl_table=11 FT /gene="rplE" FT /locus_tag="CAB104" FT /product="putative 50S ribosomal protein l5" FT /note="Similar to Chlamydia pneumoniae 50S ribosomal FT protein l5 RplE or Rl5 or cpn0635 or cp0112 SWALL:RL5_CHLPN FT (SWALL:Q9Z7R9) (180 aa) fasta scores: E(): 2.5e-64, 91.11% FT id in 180 aa, and to Bacillus subtilis 50S ribosomal FT protein l5 RplE SWALL:RL5_BACSU (SWALL:P12877) (179 aa) FT fasta scores: E(): 1e-34, 52.51% id in 179 aa" FT /db_xref="GOA:Q5L708" FT /db_xref="InterPro:IPR002132" FT /db_xref="UniProtKB/Swiss-Prot:Q5L708" FT /protein_id="CAH63562.1" FT /translation="MSRLKKLYTEEIRKTLQEKFGYSNTMQIPVLKKIVISMGLAEAAK FT DKNLFQAHLDELSMISGQKPLVTKARNSIAGFKLREGQGIGAKVTLRGQRMYDFMDRFC FT HIVSPRIRDFRGFSSKGDGRGCYSLGLDDQQIFPEVDLDRVKRTQGMNITWVTTAQTDV FT ECTTLLELMGLRFKKAQ" FT misc_feature 113960..114130 FT /note="Pfam match to entry PF00281 Ribosomal_L5, Ribosomal FT protein L5 , score 115.1, E-value 8.4e-32" FT misc_feature 114059..114109 FT /note="PS00358 Ribosomal protein L5 signature." FT misc_feature 114140..114421 FT /note="Pfam match to entry PF00673 Ribosomal_L5_C, FT ribosomal L5P family C-terminus , score 107.9, E-value FT 1.3e-29" FT CDS 114452..114853 FT /transl_table=11 FT /gene="rpsH" FT /locus_tag="CAB105" FT /product="putative 30S ribosomal protein s8" FT /note="Similar to Chlamydia pneumoniae 30S ribosomal FT protein s8 RpsH or Rs8 or cpn0634 or cp0113 SWALL:RS8_CHLPN FT (SWALL:Q9Z7S0) (133 aa) fasta scores: E(): 6.2e-43, 86.46% FT id in 133 aa, and to Bacillus subtilis 30S ribosomal FT protein s8 rpsH SWALL:RS8_BACSU (SWALL:P12879) (131 aa) FT fasta scores: E(): 1.3e-17, 44.18% id in 129 aa" FT /db_xref="GOA:Q5L707" FT /db_xref="InterPro:IPR000630" FT /db_xref="UniProtKB/Swiss-Prot:Q5L707" FT /protein_id="CAH63563.1" FT /translation="MGMTSDTIADLLTRIRNALKAEHLYVDLEHSKMREAIVKILKQHG FT FLAHYLIKEEHRKRTMRIFLQYTNDRKPVIRQLKRVSKPSRRVYVPAAKIPYVFGNMGI FT SVLSTSQGVLDGSTARAKNIGGELLCLVW" FT misc_feature 114467..114850 FT /note="Pfam match to entry PF00410 Ribosomal_S8, Ribosomal FT protein S8 , score 217.9, E-value 9.5e-63" FT misc_feature 114758..114811 FT /note="PS00053 Ribosomal protein S8 signature." FT misc_feature 114839..114847 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="PS00294 Prenyl group binding site (CAAX box)." FT CDS 114885..115436 FT /transl_table=11 FT /gene="rplF" FT /locus_tag="CAB106" FT /product="putative 50S ribosomal protein l6" FT /note="Similar to Chlamydia muridarum 50S ribosomal protein FT l6 RplF or tc0801 SWALL:RL6_CHLMU (SWALL:Q9PJM8) (183 aa) FT fasta scores: E(): 1.4e-56, 83.6% id in 183 aa, and to FT Guillardia theta chloroplast 50S ribosomal protein l6 rpl6 FT SWALL:RK6_GUITH (SWALL:O46908) (179 aa) fasta scores: E(): FT 2.2e-28, 49.17% id in 181 aa" FT /db_xref="GOA:Q5L706" FT /db_xref="InterPro:IPR019906" FT /db_xref="UniProtKB/Swiss-Prot:Q5L706" FT /protein_id="CAH63564.1" FT /translation="MSRKARDPIVLPQGVEVSIQNNEILVKGPKGSLKQVLAPEVVIDI FT KGREVFVHPAPYVVDRPSRMQGLFWALISNMVQGVSVGFEKRLEMIGVGFRASVQGSIL FT DLSIGVSHPTKIPIPADIQVSVEKNTIISVKGINKQLVGEFAANIRAKRKPEPYKGKGI FT RYENEYVRRKAGKAAKTGKK" FT misc_feature 114915..115133 FT /note="Pfam match to entry PF00347 Ribosomal_L6, Ribosomal FT protein L6 , score 60.8, E-value 2e-15" FT misc_feature 115155..115382 FT /note="Pfam match to entry PF00347 Ribosomal_L6, Ribosomal FT protein L6 , score 108.4, E-value 8.8e-30" FT misc_feature 115347..115373 FT /note="PS00525 Ribosomal protein L6 signature 1." FT CDS 115459..115830 FT /transl_table=11 FT /gene="rplR" FT /locus_tag="CAB107" FT /product="putative 50s ribosomal protein l18" FT /note="Similar to Chlamydia pneumoniae 50S ribosomal FT protein l18 RplR or Rl18 or cpn0632 or cp0115 FT SWALL:RL18_CHLPN (SWALL:Q9Z7S2) (123 aa) fasta scores: E(): FT 7.5e-33, 81.3% id in 123 aa, and to Bacillus subtilis 50S FT ribosomal protein l18 RplR SWALL:RL18_BACSU (SWALL:P46899) FT (120 aa) fasta scores: E(): 2.8e-11, 42.37% id in 118 aa" FT /db_xref="GOA:Q5L705" FT /db_xref="InterPro:IPR004389" FT /db_xref="UniProtKB/Swiss-Prot:Q5L705" FT /protein_id="CAH63565.1" FT /translation="MENSLFKKSEKKVRRALRVRKVLRGSSLKPRLSVVKTNKHIYVQL FT IDDSIGKTLASVSTIAKSSKAAGLVKKNQGVAKALGVQIAEIGKSLQVDRVVFDRGPFK FT YHGIIAMVADGAREGGLQF" FT misc_feature 115477..115827 FT /note="Pfam match to entry PF00861 Ribosomal_L18p, FT Ribosomal L18p/L5e family , score 150.5, E-value 1.9e-42" FT CDS 115846..116343 FT /transl_table=11 FT /gene="rpsE" FT /locus_tag="CAB108" FT /product="putative 30S ribosomal protein s5" FT /note="Similar to Chlamydia trachomatis, and Chlamydia FT muridarum 30S ribosomal protein s5 RpsE or Rs5 or ct512 or FT tc0799 SWALL:RS5_CHLTR (SWALL:P28543) (165 aa) fasta FT scores: E(): 1.6e-50, 86.06% id in 165 aa, and to Bacillus FT subtilis 30S ribosomal protein s5 RpsE or SpcA FT SWALL:RS5_BACSU (SWALL:P21467) (166 aa) fasta scores: E(): FT 3.3e-23, 48.32% id in 149 aa" FT /db_xref="GOA:Q5L704" FT /db_xref="InterPro:IPR018192" FT /db_xref="UniProtKB/Swiss-Prot:Q5L704" FT /protein_id="CAH63566.1" FT /translation="MTLSKNSHKEDQLEEKVLVVNRCSKVVKGGRKFSFSALILVGDGK FT GRLGYGFAKANELTDAIRKGGEAARKNLITIESLEGDSIPHEVLVDQDGAQLLLKPAKP FT GTGIVAGSRIRLILEMAGVKNIVAKSLGSNNPMNQVKAAFKALLSLSSRKDVLTRRKVT FT HD" FT misc_feature 115879..116079 FT /note="Pfam match to entry PF00333 Ribosomal_S5, Ribosomal FT protein S5, N-terminal domain , score 132.3, E-value FT 5.7e-37" FT misc_feature 115933..116031 FT /note="PS00585 Ribosomal protein S5 signature." FT misc_feature 116107..116328 FT /note="Pfam match to entry PF03719 Ribosomal_S5_C, FT Ribosomal protein S5, C-terminal domain , score 129.8, FT E-value 3.2e-36" FT CDS 116336..116770 FT /transl_table=11 FT /gene="rplO" FT /locus_tag="CAB109" FT /product="putative 50S ribosomal protein l15" FT /note="Similar to Chlamydia pneumoniae 50S ribosomal FT protein l15 RplO or Rl15 or cpn0630 or cp0117 FT SWALL:RL15_CHLPN (SWALL:Q9Z7S4) (144 aa) fasta scores: E(): FT 3.6e-43, 82.51% id in 143 aa, and to Bacillus subtilis 50S FT ribosomal protein l15 RplO SWALL:RL15_BACSU (SWALL:P19946) FT (146 aa) fasta scores: E(): 1.6e-11, 41.73% id in 127 aa" FT /db_xref="GOA:Q5L703" FT /db_xref="InterPro:IPR005749" FT /db_xref="UniProtKB/Swiss-Prot:Q5L703" FT /protein_id="CAH63567.1" FT /translation="MIKLESLQDPSPRKRRTKLLGRGPSSGHGKTSCRGHKGDGSRSGY FT KRRFGYEGGGVPLYRRVPTRGFSHARFDKCVEEITTQRLNALFSEGEEITLEALKQKKA FT IDKRAIRVKVIVKGDLEKTFIWKDANVVLSQGVRNLIGVA" FT misc_feature 116339..116650 FT /note="Pfam match to entry PF01305 Ribosomal_L15, Ribosomal FT protein L15 amino terminal region , score 205.8, E-value FT 4.3e-59" FT CDS 116795..118168 FT /transl_table=11 FT /gene="secY" FT /locus_tag="CAB110" FT /product="putative preprotein translocase SecY subunit" FT /note="Similar to Chlamydia pneumoniae preprotein FT translocase SecY subunit cpn0629 or cp0118 SWALL:SECY_CHLPN FT (SWALL:Q9Z7S5) (457 aa) fasta scores: E(): 2e-155, 87.96% FT id in 457 aa, and to Escherichia coli, and Escherichia coli FT O157:H7 preprotein translocase SecY subunit FT SWALL:SECY_ECOLI (SWALL:P03844) (443 aa) fasta scores: E(): FT 1e-41, 39.64% id in 449 aa" FT /db_xref="GOA:Q5L702" FT /db_xref="InterPro:IPR002208" FT /db_xref="UniProtKB/TrEMBL:Q5L702" FT /protein_id="CAH63568.1" FT /translation="MTTLRQIFSIAELRQKLFFTFALLAACRIGVFIPVPGINGERAVA FT YFKQLLGSSQNLFQLADIFSGGAFAQMTVIALGVVPYISASIIVQLLLVFMPSIQREMR FT ESPDQGKRKIGRLTRLFTVGLACIQSLLFAKFALKMNMSIPGIVLPTLLSSKLFGAPWI FT FYLTTVIVMTTGTLLLMWIGEQISDRGIGNGVSLIISLGILASFPSVLGSIVNKLNLGS FT QDPSQLGLFSLLLLCLIFVFVLVTTILIIEGVRKIPVQYARRVIGRREIPGGGSYLPLK FT VNYAGVIPVIFASSLLMFPATIGQFMSSDSSWLKRVAMMLSPGSWVYSSCYVLLIIFFT FT YFWTATQFHPEQIASEMKKNNAFIPGIRQGKPTQTYLEYTMNRVTLLGAVFLAVIAILP FT SILGRVLNVDANVSYFLGGTAMLIVVGVVLDTMKQVDAFLLMRRYDSFLKKDRSKGRH" FT misc_feature 116843..116875 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature join(116843..116911,117014..117082,117143..117196, FT 117275..117343,117362..117430,117488..117556, FT 117644..117712,117770..117829,117944..118012, FT 118022..118081) FT /note="10 probable transmembrane helices predicted for FT CAB110 by TMHMM2.0 at aa 17-39, 74-96, 117-134, 161-183, FT 190-212, 232-254, 284-306, 326-345, 384-406 and 410-429" FT misc_feature 117011..117070 FT /note="PS00755 Protein secY signature 1." FT misc_feature 117011..118096 FT /note="Pfam match to entry PF00344 secY, eubacterial secY FT protein , score 635.8, E-value 1.5e-188" FT misc_feature 117335..117391 FT /note="PS00756 Protein secY signature 2." FT misc_feature 118067..118087 FT /note="PS00307 Legume lectins beta-chain signature." FT CDS 118224..118592 FT /transl_table=11 FT /gene="rpsM" FT /locus_tag="CAB111" FT /product="putative 30s ribosomal protein s13" FT /note="Similar to Chlamydia muridarum 30s ribosomal protein FT s13 RpsM or tc0796 SWALL:RS13_CHLMU (SWALL:Q9PJN2) (122 aa) FT fasta scores: E(): 6.2e-42, 96.72% id in 122 aa, and to FT Bacillus subtilis 30s ribosomal protein s13 RpsM FT SWALL:RS13_BACSU (SWALL:P20282) (120 aa) fasta scores: E(): FT 1.9e-19, 52.5% id in 120 aa" FT /db_xref="GOA:Q5L701" FT /db_xref="InterPro:IPR018269" FT /db_xref="UniProtKB/Swiss-Prot:Q5L701" FT /protein_id="CAH63569.1" FT /translation="MPRIIGIDIPAKKKLKISLTYIYGIGPALSEEIIAKLQLNPEARA FT AELTEEEIGRLNSLLQSDYVVEGDLRRRVQSDIKRLISIHAYRGQRHRLSLPVRGQRTK FT TNSRTRKGKRKTVAGKKK" FT misc_feature 118230..118550 FT /note="Pfam match to entry PF00416 Ribosomal_S13, Ribosomal FT protein S13/S18 , score 178.5, E-value 7.2e-51" FT misc_feature 118452..118484 FT /note="PS00435 Peroxidases proximal heme-ligand signature." FT misc_feature 118485..118526 FT /note="PS00646 Ribosomal protein S13 signature." FT CDS 118613..119011 FT /transl_table=11 FT /gene="rpsK" FT /locus_tag="CAB112" FT /product="putative 30s ribosomal protein s11" FT /note="Similar to Chlamydia pneumoniae 30s ribosomal FT protein s11 RpsK or Rs11 or cpn0627 or cp0120 FT SWALL:RS11_CHLPN (SWALL:Q9Z7S7) (133 aa) fasta scores: E(): FT 5.9e-45, 94.73% id in 133 aa, and to Bacillus subtilis 30s FT ribosomal protein s11 RpsK SWALL:RS11_BACSU (SWALL:P04969) FT (131 aa) fasta scores: E(): 3.2e-27, 61.71% id in 128 aa" FT /db_xref="GOA:Q5L700" FT /db_xref="InterPro:IPR018102" FT /db_xref="UniProtKB/Swiss-Prot:Q5L700" FT /protein_id="CAH63570.1" FT /translation="MVKHQAQKKGVKRKQLKNIPSGIVHVKATFNNTIVSITDPAGNTI FT SWASAGKVGYSGSRKSSAFAATVAAQDAAKIAMNSGLKEVEVCLKGTGAGRESAVRALI FT AAGLVVSVIRDETPVPHNGCRPRKRRRV" FT misc_feature 118676..119005 FT /note="Pfam match to entry PF00411 Ribosomal_S11, Ribosomal FT protein S11 , score 190.9, E-value 1.4e-54" FT misc_feature 118910..118978 FT /note="PS00054 Ribosomal protein S11 signature." FT CDS 119032..120162 FT /transl_table=11 FT /gene="rpoA" FT /locus_tag="CAB113" FT /product="putative DNA-directed RNA polymerase alpha chain" FT /EC_number="2.7.7.6" FT /note="Similar to Chlamydia trachomatis DNA-directed RNA FT polymerase alpha chain RpoA or ct507 SWALL:RPOA_CHLTR FT (SWALL:Q46449) (377 aa) fasta scores: E(): 1.5e-124, 84.88% FT id in 377 aa, and to Bacillus subtilis DNA-directed RNA FT polymerase alpha chain RpoA SWALL:RPOA_BACSU (SWALL:P20429) FT (314 aa) fasta scores: E(): 3.6e-23, 39.57% id in 331 aa" FT /db_xref="GOA:Q5L6Z9" FT /db_xref="InterPro:IPR011773" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6Z9" FT /protein_id="CAH63571.1" FT /translation="MSDCSQNLLYDKFELPESVKMMAVEGSGGSVDKQASFIAEPLERG FT MGHTLGNALRRALLIGLEAPAIISFSMTGVLHEYMAINGIIEDVTNIILNLKGALLKKY FT PFQDSENGRCTQLLKSKVSIDASDLAACGGQKAVTLADLLQEGGFESVNPDYVIFTVTQ FT PMQLDITLRVAFGRGYTTSERIVLEDKGVNEIVLDAAFSPVVLVNYFVEDTRVGQDTDF FT DRLILHVETDGRVSPKEALAFSTQILTKHFSIFEKMDEKKIVFEEAISLEKENKDDILH FT KLVLGINEIELSVRSTNCLSNANIETIGELVIMPEPRLLQFRNFGKKSLCEIKNKLKEM FT KLELGMDLSQFGVGLDNVKEKMKWYADKIRSKNGKG" FT misc_feature 119131..119787 FT /note="Pfam match to entry PF01000 RNA_pol_A_bac, Bacterial FT RNA polymerase, alpha chain, N terminal domain , score FT 360.1, E-value 1.6e-105" FT misc_feature 119845..120048 FT /note="Pfam match to entry PF03118 RNA_pol_A_CTD, Bacterial FT RNA polymerase, alpha chain C terminal domain , score FT 125.2, E-value 8.1e-35" FT CDS 120171..120599 FT /transl_table=11 FT /gene="rplQ" FT /locus_tag="CAB114" FT /product="putative 50s ribosomal protein l17" FT /note="Similar to Chlamydia pneumoniae 50s ribosomal FT protein l17 RplQ or Rl17 or cpn0625 or cp0122 FT SWALL:RL17_CHLPN (SWALL:Q9Z7S9) (142 aa) fasta scores: E(): FT 1.9e-46, 88.02% id in 142 aa, and to Bacillus subtilis 50s FT ribosomal protein l17 RplQ SWALL:RL17_BACSU (SWALL:P20277) FT (119 aa) fasta scores: E(): 1.2e-05, 42.42% id in 132 aa" FT /db_xref="GOA:Q5L6Z8" FT /db_xref="InterPro:IPR000456" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6Z8" FT /protein_id="CAH63572.1" FT /translation="MQHARKKFRVGRTSAHNRCMLANMLKSLIHQERIETTLPKAKELR FT RHADKMITLAKKNTLAARRLAVARLMIRYNKLTSKEARQAKGGDLSVYNVDRKVINKLF FT DELGSRFVSRNGGYTRILKMQNRVGDNARKCIIEFLAN" FT misc_feature 120228..120590 FT /note="Pfam match to entry PF01196 Ribosomal_L17, Ribosomal FT protein L17 , score 248.3, E-value 6.9e-72" FT misc_feature 120270..120338 FT /note="PS01167 Ribosomal protein L17 signature." FT CDS 120638..121645 FT /transl_table=11 FT /gene="gapA" FT /locus_tag="CAB115" FT /product="putative glyceraldehyde 3-phosphate FT dehydrogenase" FT /EC_number="1.2.1.12" FT /note="Similar to Chlamydia pneumoniae glyceraldehyde FT 3-phosphate dehydrogenase gap or gapa or cpn0624 or cp0123 FT SWALL:G3P_CHLPN (SWALL:Q9Z7T0) (335 aa) fasta scores: E(): FT 4.8e-108, 80.59% id in 335 aa, and to Escherichia coli, and FT Escherichia coli O157:H7 glyceraldehyde 3-phosphate FT dehydrogenase gapA or SWALL:G3P1_ECOLI (SWALL:P06977) (330 FT aa) fasta scores: E(): 8.3e-77, 59.33% id in 332 aa" FT /db_xref="GOA:Q5L6Z7" FT /db_xref="InterPro:IPR006424" FT /db_xref="UniProtKB/TrEMBL:Q5L6Z7" FT /protein_id="CAH63573.1" FT /translation="MKVVINGFGRIGRLVLRQFLKRNSSIEVVAVNDLVPGEALTYLFK FT YDSTHGRFPAEVSHENGCLVVDGRRIQLLAQSDVQKLPWKDLGVDIVIESTGLFTKKED FT AEKHLASGAKRVLITAPAKGDVPTFVMGVNEHKFDPEKDLIISNASCTTNCLAPLAKVL FT LDSFGIEEGLMTTVHAATATQSVVDGPSKKDWRGGRGAFQNIIPASTGAAKAVALCLPE FT LKNKLTGMAFRVPVADVSVVDLTVRLQKSTSYEEICKVVKEASEAHLSGILGYTDQEVV FT SSDFIGCEYSSIFDAGAGIALTDRFFKLVAWYDNEIGYATRIVDLLEYVAKNSK" FT misc_feature 120638..121090 FT /note="Pfam match to entry PF00044 gpdh, Glyceraldehyde FT 3-phosphate dehydrogenase, NAD binding domain , score FT 319.8, E-value 2.1e-93" FT misc_feature 121082..121105 FT /note="PS00071 Glyceraldehyde 3-phosphate dehydrogenase FT active site." FT misc_feature 121091..121576 FT /note="Pfam match to entry PF02800 gpdh_C, Glyceraldehyde FT 3-phosphate dehydrogenase, C-terminal domain , score 394.6, FT E-value 6.2e-116" FT CDS 121658..122479 FT /transl_table=11 FT /locus_tag="CAB116" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae protein FT cpn0623/cp0124/cpj0623 cpn0623 or cp0124 or cpj0623 FT SWALL:Y623_CHLPN (SWALL:Q9Z7T1) (277 aa) fasta scores: E(): FT 6.7e-61, 69.45% id in 275 aa. Only significant full-length FT database matches are to predicted Chlamydiaceae proteins." FT /db_xref="UniProtKB/TrEMBL:Q5L6Z6" FT /protein_id="CAH63574.1" FT /translation="MYFTRDPVIETVITSREGYKLSIRNTKQLSQDPFVVEAVEVISLG FT NTCFLRNCDHSKPFIVPAGDYEVMEVRDTKINLKAVGLDRGIKIAGGREALIKLPKAAP FT VAVVEESVSETVAVETPLETPAAPAPHSTTRKEKKEHKGDKWKEKKKQGRKKTNKEVSE FT VVGSSQEIIDTVTEELWEESQENKLGEQKKFSLLPPPEKLISEIISQAVSDPTATSADL FT DESLQALVTESSDVINTLLSGDQTIIFPEEEIETANACEQSLPSSFPTEDE" FT tRNA 122658..122740 FT /gene="tRNA-Leu" FT /product="transfer RNA-Leu" FT /note="anticodon TAA, Cove score 59.80" FT CDS 122987..123889 FT /transl_table=11 FT /locus_tag="CAB117" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae ct503 hypothetical FT protein cpn0622 or cpj0622 or cp0125 SWALL:Q9Z7T2 FT (EMBL:AE001646) (320 aa) fasta scores: E(): 2.7e-31, 45.72% FT id in 304 aa. Only significant full-length database matches FT are to predicted Chlamydiaceae proteins." FT /db_xref="UniProtKB/TrEMBL:Q5L6Z5" FT /protein_id="CAH63575.1" FT /translation="MRRLLLAIKLHLTSMWSSNSTCFSSNHYDIYSRSMLLLLCRWKDA FT DIMEWEYACTALADICSKMSGQLLANKSEVVQAALPNEQDMHAEWTYRFSALEREFASR FT AEMRNSEIEKLKNENNWLQHRLAEKLQQVRHQNDIIDELKRDLVESVQQTEISEGRRLC FT YEHKIKILEEQLDKVTLSKIPETDMFEQRHAACLSQEDQTTKYQEEIARLNLELQCYRN FT SDYTNVEAEKIVQIHDELVQKKKEIALLHDLVEEQHCHIQTLSKQLGVEDVVHVSHLKQ FT LLGRDLDCNPCMQESQCGS" FT CDS 124006..124503 FT /transl_table=11 FT /gene="ruvC" FT /locus_tag="CAB118" FT /product="putative crossover junction endodeoxyribonuclease FT RuvC" FT /EC_number="3.1.22.4" FT /note="Similar to Chlamydia trachomatis crossover junction FT endodeoxyribonuclease RuvC or ct502 SWALL:RUVC_CHLTR FT (SWALL:O84510) (170 aa) fasta scores: E(): 9.3e-41, 69.18% FT id in 159 aa, and to Escherichia coli, and Escherichia coli FT O157:H7 crossover junction endodeoxyribonuclease RuvC FT SWALL:RUVC_ECOLI (SWALL:P24239) (172 aa) fasta scores: E(): FT 4.2e-16, 40.62% id in 160 aa" FT /db_xref="GOA:Q5L6Z4" FT /db_xref="InterPro:IPR002176" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6Z4" FT /protein_id="CAH63576.1" FT /translation="MIMGIDPGTLVSGYAIILVEQRYKIRAHSYGAIRLSSKDSLTQRY FT KQLFQTLSGVLDNVTPDAVVLETQYVHKNPQSAIKLGMGRGVLVLAAALRDIPVFEYTP FT NVAKRAVVGKGNASKQQVQLMVSKILNIPDVLNSDCEDIADAFALAICHAHTSAYTCLG FT VR" FT misc_feature 124009..124464 FT /note="Pfam match to entry PF02075 RuvC, Crossover junction FT endodeoxyribonuclease RuvC , score 260.4, E-value 1.6e-75" FT CDS 124458..125126 FT /transl_table=11 FT /gene="ruvA" FT /locus_tag="CAB119" FT /product="putative holliday junction DNA helicase RuvA" FT /note="Similar to Chlamydia pneumoniae holliday junction FT DNA helicase RuvA or cpn0620 or cp0127 SWALL:RUVA_CHLPN FT (SWALL:Q9Z7T4) (207 aa) fasta scores: E(): 5.1e-49, 63.59% FT id in 206 aa, and to Escherichia coli, and Escherichia coli FT O157:H7 holliday junction DNA helicase RuvA FT SWALL:RUVA_ECOLI (SWALL:P08576) (203 aa) fasta scores: E(): FT 5.9e-18, 36.71% id in 207 aa" FT /db_xref="GOA:Q5L6Z3" FT /db_xref="InterPro:IPR000085" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6Z3" FT /protein_id="CAH63577.1" FT /translation="MPRAYFCIYLFGSSIMYDYIRGVLTYISSSTMVIESQGLGFSIFA FT PERWLIELSSQLHRELIVYTYTVVRETEHVLYGFHTRGERECFRMLISFSGVGPKTGLA FT ILNTFSLSQLCSIARAEDIKAIASVPGIGKKTAEKLMVDLKQKLADLLPLDAQILASWE FT PAKPSCMEEGIQALAALGYPKSSAERMIAEAMSELPDHASVAEILPIALKKNLQGLNKI FT " FT misc_feature 124503..124694 FT /note="Pfam match to entry PF01330 RuvA, RuvA N terminal FT domain , score 86.9, E-value 2.7e-23" FT misc_feature 124698..124916 FT /note="Pfam match to entry PF02904 RuvA_II, RuvA central FT domain II , score 136.9, E-value 2.4e-38" FT CDS 125197..125622 FT /transl_table=11 FT /gene="ndk" FT /locus_tag="CAB120" FT /product="putative nucleoside diphosphate kinase" FT /EC_number="2.7.4.6" FT /note="Similar to Chlamydia trachomatis nucleoside FT diphosphate kinase Ndk or ct500 SWALL:NDK_CHLTR FT (SWALL:O84508) (141 aa) fasta scores: E(): 4.2e-45, 87.23% FT id in 141 aa, and to Escherichia coli, and Escherichia coli FT O157:H7 nucleoside diphosphate kinase Ndk SWALL:NDK_ECOLI FT (SWALL:P24233) (142 aa) fasta scores: E(): 1.9e-26, 56.61% FT id in 136 aa" FT /db_xref="GOA:Q5L6Z2" FT /db_xref="InterPro:IPR001564" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6Z2" FT /protein_id="CAH63578.1" FT /translation="MEQTLSIIKPDSVGKAHIGEIIAIFEKSGFRIAAMKMLHLSVKEA FT EGFYAVHKSRPFFQELVDFMISGPVVVMVLEGNNAVARNREIMGATNPQEAAPGTIRAQ FT FGESIGINAVHGSDSLENAAIEINYFFSKVEIVNSAA" FT misc_feature 125200..125610 FT /note="Pfam match to entry PF00334 NDK, Nucleoside FT diphosphate kinase , score 253.5, E-value 1.9e-73" FT misc_feature 125530..125556 FT /note="PS00469 Nucleoside diphosphate kinases active site." FT CDS complement(125635..126336) FT /transl_table=11 FT /locus_tag="CAB121" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae lipoate-protein FT ligase a lpla_2 or cpn0618 or cp0129 SWALL:Q9Z7T6 FT (EMBL:AE001646) (235 aa) fasta scores: E(): 1.1e-59, 59.82% FT id in 234 aa" FT /db_xref="GOA:Q5L6Z1" FT /db_xref="InterPro:IPR004143" FT /db_xref="UniProtKB/TrEMBL:Q5L6Z1" FT /protein_id="CAH63579.1" FT /translation="MLTNKCIFLNLSGKTIFEQLQIEEALLRNYKENVCIINFNTPEAV FT VLGISRQPSEDLYISELRSDNIPIIKRYSGGGTVFIDNNSLFVTWIMHSQHMAQSQDLM FT QWSYGIYAPIFPETFALHENDYTLGEKKIAGNAQYIQKSRWVHHTTFLWDMDINKLSRY FT LPIPQKQPSYRKQRLHQDFLTTIRPWFPTKESFFNKLKTSASSRFVWETLSKNELKDIL FT EKPHRKSTILL" FT misc_feature complement(125860..126210) FT /note="Pfam match to entry PF03099 BPL_LipA_LipB, FT Biotin/lipoate A/B protein ligase family , score 59.1, FT E-value 6.4e-15" FT CDS complement(126323..128158) FT /transl_table=11 FT /gene="gidA" FT /locus_tag="CAB122" FT /product="putative division protein a" FT /note="Similar to Chlamydia pneumoniae glucose inhibited FT division protein a GidA or cpn0617 or cp0130 FT SWALL:GIDA_CHLPN (SWALL:Q9Z7T7) (611 aa) fasta scores: E(): FT 2.6e-199, 84.94% id in 611 aa, and to Escherichia coli FT glucose inhibited division protein a gida or b3741 FT SWALL:GIDA_ECOLI (SWALL:P17112) (629 aa) fasta scores: E(): FT 1.4e-97, 49.11% id in 621 aa" FT /db_xref="GOA:Q5L6Z0" FT /db_xref="InterPro:IPR002218" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6Z0" FT /protein_id="CAH63580.1" FT /translation="MWTHPINYDVIVVGAGHAGCEAAFCSAKMGASVLILSSNLDTIAK FT LSCNPAVGGIGKGHIVREIDALGGIMAEVTDQSGIQFRILNQTKGPAVRAPRAQVDKQM FT YHIHMKRLLESSPGLHIMQGTVESLLDNENVIQGVTTKEGITYLGKTVILSSGTFMRGL FT IHIGDLNFPGGRLGDPAATGLSLALKERGFPISRLKTGTPPRLLASSIDFSVTEEQPGD FT PGVGFVHRSEPFVPPLPQVSCYITHTTEKTKDIIAANIHRSALYGGRIEGIGPRYCPSI FT EDKIVKFADKERHHIFIEPEGIHTQEVYVNGLSTSMPFDVQYDMIRSVLGLENAIITRP FT AYAIEYDYVHGNVIYPTLESKLIEGLFLCGQINGTTGYEEAAAQGLIAGINAVNKVLKK FT PAFIPSRQESYIGVMLDDLTTQILDEPYRMFTGRAEHRLLLRQDNACLRLSHYGRDLGL FT LSKERYEIFENQKQIIEEEKLRLSKTFKKYGNSVVSLAKALCRPEVSYDTLREAFPEDI FT RDYGSTLNASLEMEIKYAGYIDRQKALIHSLSKSENMVIPEDIDYQSISSLSLEAREKL FT AKFTPRTIGSASRISGIACADIQVLMVAVKKHAHQ" FT misc_feature complement(126332..128137) FT /note="Pfam match to entry PF01134 GIDA, Glucose inhibited FT division protein A , score 1089.9, E-value 0" FT misc_feature complement(127295..127339) FT /note="PS01280 Glucose inhibited division protein A family FT signature 1." FT misc_feature complement(127706..127729) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(128620..130065) FT /transl_table=11 FT /gene="dnaB" FT /locus_tag="CAB123" FT /product="putative replicative DNA helicase" FT /note="Similar to Chlamydia pneumoniae replicative DNA FT helicase cp0131 SWALL:Q9K2D6 (EMBL:AE002174) (468 aa) fasta FT scores: E(): 3.8e-151, 85.59% id in 465 aa, and to FT Escherichia coli replicative DNA helicase DnaB FT SWALL:DNAB_ECOLI (SWALL:P03005) (471 aa) fasta scores: E(): FT 3e-39, 38% id in 471 aa" FT /db_xref="GOA:Q5L6Y9" FT /db_xref="InterPro:IPR016136" FT /db_xref="UniProtKB/TrEMBL:Q5L6Y9" FT /protein_id="CAH63581.1" FT /translation="MHLDHVIKIMSTQIEKTPPPTLPSPPNSKESEMIVLGCMLTGVNY FT LNLAANQLNEDDFYYLEHKIIFRVLQDAFKHDKPIDVHLAGEELKRRNQLAVIGGPSYL FT ITLADFAGTAAYIEEYIQIILSKSILRKMIQTAKEIEKKAIEEPKDVAVALDEAQNALF FT KISQTTSLSQYVLVADKLQGLTSSQDKPFLIQLQEKQEFFQQYAQSDDALPISGIPTHF FT IDLDKMINGFSPSNLMILAARPAMGKTALALNIAENMCFQNQLPIGIFSLEMTVDQLIH FT RIICSRSEVESRKINVGDLSGQDFQRIVSVVNEMQQHTLLIDDQPGLKVTDLRARARRM FT KESYDIQFLIIDYLQLLSGSGTLRSVESRQTEISEISRMLKTLARELNIPILCLSQLSR FT KVEDRTNHRPMMSDLRESGSIEQDSDLVMFLLRREYYDPNDKPGTAELIVAKNRHGSIG FT SVPLVFEKELARFRNYAAFEFNG" FT misc_feature complement(128824..129426) FT /note="Pfam match to entry PF03796 DnaB_C, DnaB-like FT helicase C terminal domain , score 406.5, E-value 1.7e-119" FT misc_feature complement(129319..129342) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(129688..129999) FT /note="Pfam match to entry PF00772 DnaB, DnaB-like helicase FT N terminal domain , score 122.8, E-value 4.1e-34" FT tRNA 130402..130489 FT /gene="tRNA-Ser" FT /product="transfer RNA-Ser" FT /note="anticodon GCT, Cove score 56.02" FT CDS 130703..131209 FT /transl_table=11 FT /locus_tag="CAB124" FT /product="putative alcohol phosphatidyltransferase" FT /note="Similar to Chlamydia pneumoniae glycerol-3-p FT phosphatidyltransferase PgsA_1 or cpn0615 or cp0132 FT SWALL:Q9Z7T9 (EMBL:AE001646) (168 aa) fasta scores: E(): FT 6.8e-50, 74.25% id in 167 aa and to Rhodobacter sphaeroides FT phosphatidylglycerol phosphate synthase PgsA" FT /db_xref="GOA:Q5L6Y8" FT /db_xref="InterPro:IPR000462" FT /db_xref="UniProtKB/TrEMBL:Q5L6Y8" FT /protein_id="CAH63582.1" FT /translation="MRQFCNLLSLSRVWLALFFYQEKIHLRLLIILGAMASDVLDGYLA FT RRYKATSRFGSMLDPLTDKFFVFVCVAILYWERSLSPEHLLLIFARDIFLVLFGIYLSV FT VRGWKGYDYRALFFGKIFTVVQFIILLGVTAGVQIPVIGLAPLIVLGFLYFLERVIDYR FT KQCLH" FT misc_feature 130784..131197 FT /note="Pfam match to entry PF01066 CDP-OH_P_transf, FT CDP-alcohol phosphatidyltransferase , score 94.4, E-value FT 1.5e-25" FT misc_feature 130823..130891 FT /note="PS00379 CDP-alcohol phosphatidyltransferases FT signature." FT misc_feature join(130862..130930,130958..131026,131045..131113, FT 131123..131182) FT /note="4 probable transmembrane helices predicted for FT CAB124 by TMHMM2.0 at aa 54-76, 86-108, 115-137 and FT 141-160" FT CDS 131446..133095 FT /transl_table=11 FT /gene="npt2" FT /locus_tag="CAB125" FT /product="putative nucleoside triphosphate transport FT protein 2" FT /note="Similar to Chlamydia trachomatis nucleoside FT triphosphate transport protein 2 npt2 SWALL:Q9X9D2 FT (EMBL:AJ010587) (540 aa) fasta scores: E(): 2.8e-69, 65.2% FT id in 549 aa" FT /db_xref="GOA:Q5L6Y7" FT /db_xref="InterPro:IPR004667" FT /db_xref="UniProtKB/TrEMBL:Q5L6Y7" FT /protein_id="CAH63583.1" FT /translation="MQSSEMKPFSRLRAYFCPIYRSEFPKFLPLFWLAFFVGFNYCLLK FT SMKDTLVVVGSDAGAEVIPFLKVWGIVPGAVIVTMIYGWLSNRCPRDTVFYSFIGTFLG FT FFFLFAVVIYPMGDAIHLHSVADKLQELLPQGLRGFIVMIRYWSYSLYYVMSELWSSVI FT LSTLFWGLANEVTSIKEAGRFYALINTGLNLSSVLAGEISYWMGKHTFFVCPFVKDKWH FT EVMLNLTILIVLAGLSMIWLYRKVHLLTKHTYNFSAYSSSESITEGSSQVEESVASAKA FT KKKTKAKAKNLFLYLIRSRYLLGLAIIVLSYNLVIHLFEVVWKDQVSQIYSSHVEFNSY FT MSRITTLIGIVSVLAAIFLTGQSIRKWGWTVGALTTPIVMLVTGVLFFGAIFAVKKDVM FT IFGGLFNTAPLAIAAWIGGMQNVFSRAAKFTFFDQTKEMAFVPLPNDQKNLGKAAIDGV FT VSRIGKSGGSLIYQGLLIIFSSVAASLNVIAVVLLLIMIVWIAVVAFIGREYNIKEADA FT VAASSGADSMVSDMAISKTPGENSNQEEVAIL" FT misc_feature 131446..131613 FT /note="PS00430 TonB-dependent receptor proteins signature FT 1." FT misc_feature 131449..132975 FT /note="Pfam match to entry PF03219 TLC, TLC ATP/ADP FT transporter , score 925.3, E-value 1.1e-275" FT misc_feature join(131524..131577,131635..131703,131722..131790, FT 131890..131958,131995..132063,132106..132174, FT 132346..132414,132472..132525,132544..132612, FT 132640..132699,132898..132966) FT /note="11 probable transmembrane helices predicted for FT CAB125 by TMHMM2.0 at aa 27-44, 64-86, 93-115, 149-171, FT 184-206, 221-243, 301-323, 343-360, 367-389, 399-418 and FT 485-507" FT misc_feature 131944..131973 FT /note="PS00659 Glycosyl hydrolases family 5 signature." FT CDS 133198..134205 FT /transl_table=11 FT /gene="sohB" FT /locus_tag="CAB126" FT /product="putative exported protease" FT /note="Similar to Chlamydia pneumoniae protease sohB or FT cpn0613 or cp0134 SWALL:Q9Z7U1 (EMBL:AE001645) (333 aa) FT fasta scores: E(): 1.4e-87, 69.9% id in 319 aa" FT /db_xref="GOA:Q5L6Y6" FT /db_xref="InterPro:IPR002142" FT /db_xref="UniProtKB/TrEMBL:Q5L6Y6" FT /protein_id="CAH63584.1" FT /translation="MFMKTFWHFMSKGFLSILGLSLGVVLAFFVTVMLVVSTSGMHDSQ FT FVNMPDAKGEVKDVGKDAPIIAVLEMKDVIASSKHTAKIIQEAITTLDSPPYKDRVKGI FT IIDMDCPGGEVFEISRVYSTIQFWKQRTQCPVYVFVNGLCASGGYYVACAADKIYSTSS FT SLIGSIGVLSGPYFNVKEGLSRYGVQSDLLIAGKDKAPMNPYTEWTAKDREIRQEIIDY FT LYGQFVDVVVTNRPLLTKDKLVSVLGARLYSPEKALEEGYIDVTNVTKQQVLQDLVADC FT KIENNYRVIGLGSDGWLKRVMSSITNSPVITGKIQHELLPSLDNSISTFYYLDS" FT misc_feature 133198..133320 FT /note="Signal peptide predicted for CAB126 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.995) with cleavage site FT probability 0.227 between residues 41 and 42" FT misc_feature 133579..134049 FT /note="Pfam match to entry PF01343 Peptidase_U7, Peptidase FT family U7 , score 94.4, E-value 1.5e-25" FT CDS 134233..136842 FT /transl_table=11 FT /gene="polA" FT /locus_tag="CAB127" FT /product="putative DNA polymerase I" FT /note="Similar to Chlamydia pneumoniae DNA polymerase I FT PolA or cpn0612 or cp0135 SWALL:Q9Z7U2 (EMBL:AE001645) (870 FT aa) fasta scores: E(): 0, 64.02% id in 870 aa, and to FT Escherichia coli DNA polymerase I PolA SWALL:DPO1_ECOLI FT (SWALL:P00582) (928 aa) fasta scores: E(): 4e-62, 34.77% id FT in 923 aa" FT /db_xref="GOA:Q5L6Y5" FT /db_xref="InterPro:IPR008918" FT /db_xref="UniProtKB/TrEMBL:Q5L6Y5" FT /protein_id="CAH63585.1" FT /translation="MRKVFILDASGFVFRAYFALPDMKNSSGEGTQAVFGFIRSMNKLI FT KEFSPKHMVAVFDGPNNKQSRREIYADYKIHREKQDENLYQQIPIVKEYCHLLGLRYLE FT IEGVEADDVIASITKQAVSEGCEVCLCTADKDLLQLVGPNVVAWNPWKAGPPIDENSVV FT DIYGVPPSRIADYLALVGDTSDNIPGVSGCGPQKATALLQKYHSVEGILEHLDELTGST FT HKMISEQKDVLLLSKDLAVLDNNVPLPMGISGFAFPLHEVPQEEINTFYMRHGFKTLVQ FT PVEEASNIDIEIIHSCQPLVRVLSTLQGKSVAFSVGYKGNFLPSLTLMGVALACDEQVY FT YVDIEHAQDDVITPLRDFFKRKDTEFYGYNIKRDNHALKNAGIHIHNITLDLALAEHLI FT NGGAKISYQTLLVDHGLVESAGKYGKEWGQLSLPILKSPAKPAEYFGEFVSHLPKIKKS FT LLEELKVKGLEDLFFNMEMPLEKVLFTIERNGMPLDVEDLQELERTLSEELAILTDDIY FT TVAGTSFNIKSPKQLSDVLYNKLGLTPIDKARSTKAEVLAALLGEHEIVEKILAFRAIE FT KLLSTYVKALPRQIDPHTSRIHPTFNQMGTVTGRLACQDPNLQNIPIRSERGRLLRKAF FT CDTRQNNYFLSADYSQIELRFLAHLSQDESLRLAFASREDVHTFTASQVFHVPLEEVTK FT QQRMQAKTVNFGIIYGQQAYGLSKILKISVSEAQKLIDAYFDRYPAVARFINETINEAC FT ENLRVKTLLGRERIIDNWTEFSNSRAASGRLAVNTRIQGSAAELIKLAMLQLAAALEKR FT KLRSRMLLQIHDELIFEVPEEEKEEVQTLVRDIMESAMILSVPLVVNILIGKNWAEC" FT misc_feature 134236..134730 FT /note="Pfam match to entry PF02739 5_3_exonuc_N, 5'-3' FT exonuclease, N-terminal resolvase-like domain , score FT 258.1, E-value 7.5e-75" FT misc_feature 134734..135039 FT /note="Pfam match to entry PF01367 5_3_exonuclease, 5'-3' FT exonuclease, C-terminal SAM fold , score 143.5, E-value FT 2.4e-40" FT misc_feature 135709..136839 FT /note="Pfam match to entry PF00476 DNA_pol_A, DNA FT polymerase family A , score 450.8, E-value 7.4e-133" FT CDS 136827..137444 FT /transl_table=11 FT /locus_tag="CAB128" FT /product="probable dephospho-CoA kinase" FT /note="Similar to Chlamydia pneumoniae dephospho-CoA kinase FT CoaE or cpn0611 or cp0136 SWALL:COAE_CHLPN (SWALL:Q9Z7U3) FT (202 aa) fasta scores: E(): 9.8e-58, 72.77% id in 202 aa" FT /db_xref="GOA:Q5L6Y4" FT /db_xref="InterPro:IPR001977" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6Y4" FT /protein_id="CAH63586.1" FT /translation="MGRMLELLKVSITGDLSSGKTEACRVFQELGAYVISADKVSHSFL FT VPHSHIGRRVIDLLGPEVVIDNTFDRKVIAEKVFGNLDLLQALEAILHPEVCRIIEEQY FT CQVAKERKYPLFIAEVPLLYEIHYARWFDRVILITADENIRRERFTKKTNCSDLNFYQR FT CARFSSHEEKMMHADIVIENNGTKEELRHKVEEYFYALKGAL" FT misc_feature 136848..137393 FT /note="Pfam match to entry PF01121 CoaE, Dephospho-CoA FT kinase , score 85.3, E-value 8.1e-23" FT misc_feature 136866..136889 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 137441..138835 FT /transl_table=11 FT /gene="rho" FT /locus_tag="CAB129" FT /product="putative transcription termination factor" FT /note="Similar to Chlamydia pneumoniae transcription FT termination factor Rho or cpn0610 or cp0137 SWALL:Q9Z7U4 FT (EMBL:AE001645) (464 aa) fasta scores: E(): 9.4e-159, FT 94.61% id in 464 aa, and to Escherichia coli, and FT Escherichia coli O157:H7 transcription termination factor FT Rho SWALL:RHO_ECOLI (SWALL:P03002) (419 aa) fasta scores: FT E(): 3.5e-92, 61.53% id in 416 aa" FT /db_xref="GOA:Q5L6Y3" FT /db_xref="InterPro:IPR004665" FT /db_xref="UniProtKB/TrEMBL:Q5L6Y3" FT /protein_id="CAH63587.1" FT /translation="MKEERSSEVLPKVKENRKHACPGLQEKSFAGECAVVADVVNENQP FT VTITKIAKLQRMGIEELNVLARQYGVKNIGSLTKSQVVFEIVKAKSERSDELLIGEGVL FT EVLPDGFGFLRSPTYNYLPSAEDIYVSPAQIRRFDLKKGDTIIGTIRSPKEKEKYFALL FT KVDKINGSTPDKAKERVLFENLTPLYPNERIVMEMGKEHLAERVLDLTAPIGKGQRGLI FT VAPPRSGKTVILQSIAHAIAVNNPDIVLIVLLIDERPEEVTDMIRQVRGEVVASTFDEQ FT PERHIQVAEMVIEKARRLVEHGKDVVILLDSITRLARAYNTVQPHSGKILTGGVDASAL FT HKPKRFFGAARNIEGGGSLTILATALIDTGSRMDEVIFEEFKGTGNMELVLDRRLSDRR FT TYPAIDLIKSGTRKEELLYHPSELEKVYLFRQAIADLTAIDAMHLLLGRLKKTNSNAEF FT LLSLKE" FT misc_feature 137816..138691 FT /note="Pfam match to entry PF00006 ATP-synt_ab, ATP FT synthase alpha/beta family, nucleotide-binding domain , FT score 289.8, E-value 2.2e-84" FT misc_feature 138110..138133 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(139101..139361) FT /transl_table=11 FT /locus_tag="CAB130" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae ct490 hypothetical FT protein cpn0609 or cpj0609 or cp0138 SWALL:Q9Z7U5 FT (EMBL:AE001645) (94 aa) fasta scores: E(): 1.2e-08, 44.18% FT id in 86 aa. Only significant full-length database matches FT are to Chlamydiaceae proteins." FT /db_xref="UniProtKB/TrEMBL:Q5L6Y2" FT /protein_id="CAH63588.1" FT /translation="MLIRLFFGIPLSKGLENIHEYPLTVAIFQKKEYLGIYSPAQASLP FT VAQLPTYYQQAQEILEKVLPEKYLSGGETSLLVFPDILIGK" FT CDS 139387..140043 FT /transl_table=11 FT /gene="pyrE" FT /locus_tag="CAB131" FT /product="putative orotate phosphoribosyltransferase" FT /note="Similar to many Eukaryotic and Prokaryotic proteins FT involved in pyrimidine biosynthesis including: Chlamydia FT pneumoniae orotate phosphoribosyltransferase PyrE or FT cpn0608 or cp0139 or cpj0608 SWALL:PYRE_CHLPN FT (SWALL:Q9Z7U6) (210 aa) fasta scores: E(): 1.5e-45, 61.88% FT id in 202 aa" FT /db_xref="GOA:Q5L6Y1" FT /db_xref="InterPro:IPR000836" FT /db_xref="UniProtKB/TrEMBL:Q5L6Y1" FT /protein_id="CAH63589.1" FT /translation="MYFVKKTRGYWVMMSFEEKQLRDHAVMNLYRIGAIQFGDFNLADG FT QTTPIYVDMRLVISCPNVLQTIASLIWCLRPSFNSSLLCGVPYTALALATCISLKYNIS FT MVLRRKELKHSSQTDRIKVEGLFSPGQTCLVINDVVASGQSILETAKALEDEGVNIRES FT LVFLDRQVGGADALKDAGIKLRSVFTLEELVQSLLSKCELKEADAAIASTLLKSL" FT misc_feature 139531..139959 FT /note="Pfam match to entry PF00156 Pribosyltran, FT Phosphoribosyl transferase domain , score 74.0, E-value FT 2.1e-19" FT CDS 140157..141509 FT /transl_table=11 FT /gene="glgC" FT /locus_tag="CAB132" FT /product="putative glucose-1-phosphate adenyltransferase" FT /note="Similar to Chlamydia trachomatis glucose-1-p FT adenyltransferase GlgC or ct489 SWALL:O84496 FT (EMBL:AE001322) (441 aa) fasta scores: E(): 1.3e-138, FT 75.87% id in 427 aa, and to Solanum tuberosum FT glucose-1-phosphate adenylyltransferase small subunit, FT chloroplast precursor SWALL:GLGS_SOLTU (SWALL:P23509) (521 FT aa) fasta scores: E(): 3.4e-53, 35.38% id in 438 aa" FT /db_xref="GOA:Q5L6Y0" FT /db_xref="InterPro:IPR005835" FT /db_xref="UniProtKB/TrEMBL:Q5L6Y0" FT /protein_id="CAH63590.1" FT /translation="MELQKAGQMIENDFQGYPSSYQVSHFYRDKVGVIVLCGGEGRRLS FT PLTCWRCKPTVSFGGRYKLIDVPISHAIASGFSKIFVIGQYLTYTLQQHLMKTYFYHGV FT LQDQIHLLAPEGRDGSQVWYQGTADAIRQNLLYLEDTEIEYFLVLSGDQLYNMDFRRIV FT DYALYAKSDMVIVAQPIQEKDASRMGVLQIDKDGNLLDFYEKPQEQEILNRFRLSPADC FT RRHKLDPQYGNFLGNMGIYLFRRESLFQLLLEEPGDDFGKHLIQAQIQRGTVKTFLYDG FT YWTDIGTIESYYEANIALTQRPRPHVRGLNCYDDRGMIYSKNHHLPGTIVSDSMISNSL FT LCEGAVIDSSKVSHSVVGIRGVIGKNSVIDHSVVMGNDRYGNTLQTPLGIGDNCEIYKT FT IIDENCRIGNGVKLTNIKGYKDYDSPDGKLVVRDGIIIIPRGTRIPNNYTF" FT misc_feature 140250..141062 FT /note="Pfam match to entry PF00483 NTP_transferase, FT Nucleotidyl transferase , score 154.1, E-value 1.6e-43" FT misc_feature 140523..140549 FT /note="PS00809 ADP-glucose pyrophosphorylase signature 2." FT misc_feature 141234..141287 FT /note="Pfam match to entry PF00132 hexapep, Bacterial FT transferase hexapeptide (four repeats) , score 7.7, E-value FT 5" FT misc_feature 141348..141401 FT /note="Pfam match to entry PF00132 hexapep, Bacterial FT transferase hexapeptide (four repeats) , score 13.3, FT E-value 0.39" FT CDS 141624..142367 FT /transl_table=11 FT /locus_tag="CAB133" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae ct488 hypothetical FT protein cpn0606 or cpj0606 or cp0141 SWALL:Q9Z7U8 FT (EMBL:AE001645) (246 aa) fasta scores: E(): 1.7e-71, 68.01% FT id in 247 aa" FT /db_xref="GOA:Q5L6X9" FT /db_xref="InterPro:IPR014578" FT /db_xref="UniProtKB/TrEMBL:Q5L6X9" FT /protein_id="CAH63591.1" FT /translation="MQIYGIADLHLAIGVPEKTMEVFGQPWISYHEKIRERWQQTVSPE FT DIVLLPGDISWAMHIEEAKEDFSFLGSFPGTKYMIRGNHDYWSSASVTKIAQVLPESLY FT YLAQGFSIIQPNMAVVGVRLWDSPTIRIASQCFQSSPPEKAREYNEKDEKIFLRELGRL FT QRALEAVPKNIEQIIVMTHYPPISSDGSPGPVSQMLEADGRVSHCLFGHMHKVRAPLEG FT FGHIRTIEYRLVAADYIDFIPQVII" FT misc_feature 141624..142271 FT /note="Pfam match to entry PF00149 Metallophos, FT Calcineurin-like phosphoesterase , score 65.5, E-value FT 7.2e-17" FT CDS 142364..142927 FT /transl_table=11 FT /locus_tag="CAB134" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia trachomatis methylase yhhf or FT ct487 SWALL:O84494 (EMBL:AE001322) (190 aa) fasta scores: FT E(): 7.5e-45, 66.31% id in 187 aa" FT /db_xref="GOA:Q5L6X8" FT /db_xref="InterPro:IPR016065" FT /db_xref="UniProtKB/TrEMBL:Q5L6X8" FT /protein_id="CAH63592.1" FT /translation="MKILAGKYKGKSLKTFSNPSVRPTCGVVKEAVFNICSVYVEDARF FT LDLFAGVGSVGFEALSRGAASVTFVDSSAQSVRLIRANSQLLHPNLPITIIKQEARSAI FT QRLAKKNMSFDLIYIDPPYNLEDSYLAAVLRDIVVGGILDKHGCLFLENASMEPILVEG FT LIRKRSRKLGGTCLSEYVFEDSSN" FT misc_feature 142364..142906 FT /note="Pfam match to entry PF03602 Cons_hypoth95, Conserved FT hypothetical protein 95 , score 242.8, E-value 3.1e-70" FT misc_feature 142376..142399 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 142712..142732 FT /note="PS00092 N-6 Adenine-specific DNA methylases FT signature." FT CDS 143128..143880 FT /transl_table=11 FT /locus_tag="CAB135" FT /product="putative transport lipoprotein" FT /note="Similar to Chlamydia pneumoniae glutamine binding FT protein FliY or cpn0604 or cp0143 SWALL:Q9Z7V0 FT (EMBL:AE001645) (250 aa) fasta scores: E(): 3.2e-73, 74.8% FT id in 250 aa" FT /db_xref="GOA:Q5L6X7" FT /db_xref="InterPro:IPR001638" FT /db_xref="UniProtKB/TrEMBL:Q5L6X7" FT /protein_id="CAH63593.1" FT /translation="MKIKNSLKLYFLALLCFLPLVFLGCSREKKELLVGRDTTWFPKQF FT GIYTANINGFLNDLVSEINYRENLNINVINQDWIHLFENLDDEKTAGAFTSILPTAEML FT DHYQFSEPILLTGPVLVVAEGSPYTSIQDLRGKLIGVYKFDASILVGQDIPDAVLTPYQ FT HVPIALEALSSGCYDALLAPIIEVTALIDTAYKGRLKIISQPLNQDGLRLVVLRGEKNN FT LLEGFNMGLAKSIRSGKYQTIKQQYRLP" FT misc_feature 143128..143199 FT /note="Signal peptide predicted for CAB135 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.980) with cleavage site FT probability 0.471 between residues 24 and 25" FT misc_feature 143170..143202 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 143221..143877 FT /note="Pfam match to entry PF00497 SBP_bac_3, Bacterial FT extracellular solute-binding proteins, family 3 , score FT 77.2, E-value 2.2e-20" FT CDS complement(143885..144841) FT /transl_table=11 FT /gene="hemH" FT /locus_tag="CAB136" FT /product="putative ferrochelatase" FT /EC_number="4.99.1.1" FT /note="Similar to Chlamydia pneumoniae ferrochelatase hemH FT or cpn0603 or cp0144 SWALL:HEMZ_CHLPN (SWALL:Q9Z7V1) (327 FT aa) fasta scores: E(): 4.2e-76, 58.28% id in 314 aa, and to FT Escherichia coli ferrochelatase hemH SWALL:HEMZ_ECOLI FT (SWALL:P23871) (320 aa) fasta scores: E(): 9.8e-15, 27.07% FT id in 325 aa" FT /db_xref="GOA:Q5L6X6" FT /db_xref="InterPro:IPR019772" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6X6" FT /protein_id="CAH63594.1" FT /translation="MVSTYLLANFGGPRHSHDVEVFLTSLLTDRDVTGGCLPSFLHKRL FT FSFIAKKRAPKVVPQYNCIGGYSPIYQDTEALAKTLSSHLDAPVITFHRYLPDTHSQTI FT QQLKTLGDLPVVGVPLFPHFTYAVTGSIVRFIHNHLPSLNISWVAHFGNHPQFISCMID FT HILEFLQSHDIPTHDCCLLFSAHGLPMRYVNKGDPYNVQCEKSFAAISERLPNIETFLC FT YQSKFGLGKWLTPSTKEVCKTLKTNKKYVLIVPFGFTSDHIETLYEIEKEYIAILIDRK FT YQALRVPAIYQSPQWVQSLATIIQSTRYVEKHSLIKS" FT misc_feature complement(143918..144832) FT /note="Pfam match to entry PF00762 Ferrochelatase, FT Ferrochelatase , score 410.5, E-value 1e-120" FT misc_feature complement(144245..144301) FT /note="PS00534 Ferrochelatase signature." FT CDS 144935..145942 FT /transl_table=11 FT /locus_tag="CAB137" FT /product="putative membrane protein" FT /note="Similar to Chlamydia pneumoniae ct484 hypothetical FT protein cpn0602 or cpj0602 or cp0145 SWALL:Q9Z7V2 FT (EMBL:AE001645) (334 aa) fasta scores: E(): 3.4e-103, FT 78.32% id in 323 aa. Only significant database matches are FT to predicted Chlamydiaceae proteins." FT /db_xref="GOA:Q5L6X5" FT /db_xref="InterPro:IPR013026" FT /db_xref="UniProtKB/TrEMBL:Q5L6X5" FT /protein_id="CAH63595.1" FT /translation="MKLNNALPTLEALCKKTHQKLRQYLIRHSLLLFGCLLLMSVELGV FT FLYFFLFSGKTIVPAFCLACFFLTLFVCLVVRLYILSGKPDFFENLATDYLRKAQTLFK FT GKQNIVEEQTHLASSATKLAIDLQNQEYTLLSSMLNFLPKHDFMRKFSCFCFWKDYFLF FT RECLLQKAIEAYIKVVQSIPVDLGAHVSLADAYVALSGLYADPRKYPEFDVSYWVPPGR FT YGEDVQAKFFATAQRAIEEFKILNEYAPGNAWVHTQLAYSYHDLQMPLEEIQEYEMILK FT LKPTDVETMTKLGILYFQQGMNAKGLRIYEELKKRDYKKSRKLIKFYGIEYNSY" FT misc_feature join(145022..145090,145109..145177) FT /note="2 probable transmembrane helices predicted for FT CAB137 by TMHMM2.0 at aa 30-52 and 59-81" FT CDS 145996..146319 FT /transl_table=11 FT /locus_tag="CAB138" FT /product="putative membrane protein" FT /note="Similar to Chlamydia pneumoniae ct483 hypothetical FT protein cpn0601 or cpj0601 or cp0146 SWALL:Q9Z7V3 FT (EMBL:AE001645) (106 aa) fasta scores: E(): 2e-17, 54% id FT in 100 aa. Only significant database matches are to FT predicted Chlamydiaceae proteins." FT /db_xref="UniProtKB/TrEMBL:Q5L6X4" FT /protein_id="CAH63596.1" FT /translation="MKSIDVSNNTMIRSGLCDRMSVSWRARFSVRTRYEIASAVAIFGL FT ILALCGSGAVYLAFTSCAISEMFIQGCVSLGLMPIPVAIFSLLLGILILLYGIYLLPQQ FT KEE" FT misc_feature join(146101..146169,146227..146295) FT /note="2 probable transmembrane helices predicted for FT CAB138 by TMHMM2.0 at aa 36-58 and 78-100" FT misc_feature 146182..146256 FT /note="PS00043 Bacterial regulatory proteins, gntR family FT signature." FT CDS 147525..147725 FT /transl_table=11 FT /locus_tag="CAB139" FT /product="putative lipoprotein" FT /note="Similar to Chlamydophila caviae hypothetical protein FT cca00141 SWALL:Q824K4 (EMBL:AE016994) (54 aa) fasta scores: FT E(): 8.9e-06, 52.83% id in 53 aa. Note the differing FT N-termini. Also weakly similar to Chlamydia pneumoniae FT hypothetical protein Cp0147 cp0147 SWALL:Q9K2D5 FT (EMBL:AE002176) (65 aa) fasta scores: E(): 4.2, 35.59% id FT in 59 aa" FT /db_xref="UniProtKB/TrEMBL:Q5L6X3" FT /protein_id="CAH63597.1" FT /translation="MFCLAYTTRRIEMKKLILALLLASSCAYGTTAFADENDEVKVSEN FT GDQDSESENKESENHTVKHHQ" FT misc_feature 147525..147626 FT /note="Signal peptide predicted for CAB139 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 34 and 35" FT misc_feature 147570..147602 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 148659..150776 FT /transl_table=11 FT /locus_tag="CAB140" FT /product="putative transport protein" FT /note="Similar to Chlamydia pneumoniae oligopeptide binding FT lipoprotein AppA_5 or cpn0599 or cp0149 SWALL:Q9Z7V5 FT (EMBL:AE001644) (707 aa) fasta scores: E(): 0, 71.65% id in FT 709 aa, and to Bacillus subtilis oligopeptide-binding FT protein AppA precursor appA SWALL:APPA_BACSU (SWALL:P42061) FT (543 aa) fasta scores: E(): 1.3e-18, 33.08% id in 263 aa, FT and to Escherichia coli nickel-binding periplasmic protein FT precursor nika or b3476 SWALL:NIKA_ECOLI (SWALL:P33590) FT (524 aa) fasta scores: E(): 3.2e-08, 23.68% id in 380 aa" FT /db_xref="GOA:Q5L6X2" FT /db_xref="InterPro:IPR000914" FT /db_xref="UniProtKB/TrEMBL:Q5L6X2" FT /protein_id="CAH63598.1" FT /translation="MNKRCVIDKILKCVVVGSLVLLYWSSDLLEKDIKLIKMNVRDVQE FT DIQELLSIVKQNHATRSLNPSCSSSLSATTCSAFVEVGDPRYPNLLSPDPYMETTLTEL FT IGEDFVPKGVLRTAHVGKPDNLSPFNGYDYVVKMYDLCVPGLANTHVGKHEEFAPGLAL FT KIEERMASDDSGDREFHIYLRPNVFWVPVDPLRFPKHVQLAEHFMQPHPVTAYDFKFYY FT DAVMNPYIAEMRAVALRSYLEDIVSIQVENDLKFIVRWKAHTLVNEEGKEEKKVLYSAF FT FNTLSLKPLPRFVYQYFANGEKIIKNDSDPDTYRKDSVWAQNFSSHWSMNYIVSCGAFY FT FSGMDDEKLIFTRNPHHYNPKEALIEKRYVYIKDNSDSLFQDFKSGKLDLAYLPPNHVD FT NLVSFMKTPAYKNQASRGEAIREMIYPDRSYAYIGWNCYSLFFENRQVRRAMNMLIDRD FT RIIEECLDGRAHVISGPFSPFSPAYNQKIEGWHYSPEEAARILEEEGWIDVDGDGIREK FT VIDGVVIPFRFRLCYYVKSVTGRTIAEYVATVCKEIGIECSLLGLDTADLSQAFEEKNF FT DALLTGWCLGSPPEDPRALWHSEGAMEKGSANVVGFHNPEADKIIDQLSYEYDANKRVD FT LYHRFHEVIHEESPYAFLYSRTFSLLYKDYVKNVFVPKQRTDLIPDAQDEMVNLHMVWL FT DRKEEECLSIS" FT misc_feature 148863..150710 FT /note="Pfam match to entry PF00496 SBP_bac_5, Bacterial FT extracellular solute-binding proteins, family 5 , score FT -23.3, E-value 1.6e-13" FT CDS 150758..152227 FT /transl_table=11 FT /locus_tag="CAB141" FT /product="putative transport protein" FT /note="Similar to Chlamydia pneumoniae oligopeptide FT permease OppB_2 or cpn0598 or cp0150 SWALL:Q9Z7V6 FT (EMBL:AE001644) (493 aa) fasta scores: E(): 3.8e-147, FT 71.66% id in 494 aa, and to Escherichia coli, and FT Escherichia coli O157:H7 dipeptide transport system FT permease protein DppB SWALL:DPPB_ECOLI (SWALL:P37316) (339 FT aa) fasta scores: E(): 1.3e-17, 29.13% id in 278 aa" FT /db_xref="GOA:Q5L6X1" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q5L6X1" FT /protein_id="CAH63599.1" FT /translation="MLKYILKRLILIPLTLFAIISINFIILNAAPGDVIEEQSVDAFGD FT PGKSDKIRTYKGPDRYLQFREHYGLTLPIFFNTRPAISHAKVKSGIEEIVDCFIKKQSF FT SKLKIYWGDRAKFLLPVLLFEANDNTKTPSYRHVAADLFIRGAIRQGIVGSGLSPEQYA FT YNERVSKSNAMLVKLLSEEDIGIKVDSLKEWFRQEGGMEAFPYRHFSWKTFFLETRFAR FT YMSRVLRLDFGTLRNDPHKTVVSEVVKRLRSSLTLSVFPMILVFILCQVFGMLMALNRN FT RWIDHTLNFIFLFLFSVPVFVAVPWIIDNFVINKTIPFTSIPMPYSGLQSSPEIFNQLS FT SWGKILDTLAHSFLPFCAVSYGAFASQSRLSRSVFLEILGEDYICAARARGVSRYDILV FT KHVGKNAASSLITSLASSLGAILGGALVVETLFDIDGFGRFFYQAILNRDHNVVLFSVL FT VGSALSLLGYLIGDICYVLLDPRVQLGGKRV" FT misc_feature join(150770..150838,151526..151594,151613..151681, FT 151985..152053,152111..152170) FT /note="5 probable transmembrane helices predicted for FT CAB141 by TMHMM2.0 at aa 13-35, 265-287, 294-316, 418-440 FT and 460-479" FT misc_feature 150881..150904 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 151880..152095 FT /note="Pfam match to entry PF00528 BPD_transp, FT Binding-protein-dependent transport systems inner membrane FT component , score 35.6, E-value 7.5e-08" FT CDS 152229..153962 FT /transl_table=11 FT /locus_tag="CAB142" FT /product="putative transport protein" FT /note="Similar to Chlamydia pneumoniae oligopeptide FT permease OppC_2 or cpn0597 or cp0151 SWALL:Q9Z7V7 FT (EMBL:AE001644) (579 aa) fasta scores: E(): 1.7e-158, FT 67.64% id in 578 aa and to Escherichia coli, and FT Escherichia coli O157:H7 oligopeptide transport system FT permease protein OppC SWALL:OPPC_ECOLI (SWALL:P77664) (302 FT aa) fasta scores: E(): 8e-20, 32.27% id in 251 aa" FT /db_xref="GOA:Q5L6X0" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q5L6X0" FT /protein_id="CAH63600.1" FT /translation="MESPTSFYRRFFQAYHKNFLASLSWKFVIALVLLGVYAPLFASSK FT PIVVQWEGSLYFPLFRYLWFSGFYTKAIDLFFNVLMATLPLFFIACKLFKRRARRALLG FT ILTLAQVLGFIFVYQGNIQDPAGDENLKKLRAEKILSQIANSRTENIVLLPKDVRTWEL FT EKTYMSKYEQLGILIKSKYRKLQHEKLQKYCVAYEGYKGSPMPTLYYSQMKNEQVCLER FT LQQRLDKLHASYESALQTWYKAIDEYRPFLMALTRVEHDLNLALYNKDHNERLRSAYSS FT IEEEAEPFRKHLLSTRRVLEEYNKIHSAINFIQDKRAWINEESEKLRILINPLLSSFHW FT EDDAGGSHEMNKYIRWWQRTRINRKDLLASLIFGIRIAIVVGGISVAIALFIGTVIGLV FT SGYFGGTTDMVLSRFTEIWETMPMLFILMLVVSITQKKSLFLDTILLGCFGWTGFSRYI FT RIETLKQRNMSYVLAATNMCYSHYHIMVHQILPNAIVPVISLLPFSMMAMISCEAGLTF FT LGLGEESSVSWGNLMKEGVTAFPSESCILWPPAIMLTALLIAIALIGDGIRDALDPKLQ FT D" FT misc_feature 152229..152354 FT /note="Signal peptide predicted for CAB142 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.943) with cleavage site FT probability 0.773 between residues 42 and 43" FT misc_feature join(152442..152510,152529..152597,153357..153425, FT 153459..153527,153540..153608,153693..153761, FT 153861..153929) FT /note="8 probable transmembrane helices predicted for FT CAB142 by TMHMM2.0 at aa 72-94, 101-123, 377-399, 411-433, FT 438-460, 489-511 and 545-567" FT misc_feature 153612..153839 FT /note="Pfam match to entry PF00528 BPD_transp, FT Binding-protein-dependent transport systems inner membrane FT component , score 19.5, E-value 0.00073" FT CDS complement(153959..154486) FT /transl_table=11 FT /gene="ada" FT /locus_tag="CAB143" FT /product="putative DNA methyltransferase" FT /note="Similar to Chlamydia pneumoniae methyltransferase FT ada or cpn0596 or cp0152 SWALL:Q9Z7V8 (EMBL:AE001644) (173 FT aa) fasta scores: E(): 6.7e-45, 67.06% id in 167 aa, and to FT Bacillus subtilis methylated-DNA--protein-cysteine FT methyltransferase adaB SWALL:ADAB_BACSU (SWALL:P19220) (179 FT aa) fasta scores: E(): 1.5e-05, 39.5% id in 81 aa" FT /db_xref="GOA:Q5L6W9" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q5L6W9" FT /protein_id="CAH63601.1" FT /translation="MSENLYLVSDDSKFSLSQACSQGLQIAKYPPLQVIVHFQNNAVVK FT TELSVSPVFSCLFLGPGSHKAMEEIVLLCAKYSQKIDMPRSSYINTSILKKQQEMILNC FT VATIPFGQTHTYGDIAQATDTHPRTVGAVCKQNPFLLFFPCHRVIGSHGERHYCAGKQI FT QDILLNFEGSIS" FT misc_feature complement(153962..154195) FT /note="Pfam match to entry PF01035 Methyltransf_1, FT 6-O-methylguanine DNA methyltransferase, DNA binding domain FT , score 46.2, E-value 4.6e-11" FT misc_feature complement(154040..154060) FT /note="PS00374 Methylated-DNA--protein-cysteine FT methyltransferase active site." FT misc_feature complement(154082..154147) FT /note="Predicted helix-turn-helix motif with score FT 1302.000, SD 3.62 at aa 114-135, sequence FT HTYGDIAQATDTHPRTVGAVCK" FT CDS complement(154498..155469) FT /transl_table=11 FT /locus_tag="CAB144" FT /product="lipoprotein" FT /note="Similar to Chlamydia pneumoniae ct476 hypothetical FT protein cpn0595 or cpj0595 or cp0153 SWALL:Q9Z7V9 FT (EMBL:AE001644) (323 aa) fasta scores: E(): 3.9e-104, FT 75.85% id in 323 aa" FT /db_xref="UniProtKB/TrEMBL:Q5L6W8" FT /protein_id="CAH63602.1" FT /translation="MKQLLFCICALSFSCFTYGSTLKQDPSVMKETFRNNYGIIVSGRD FT WVKRGCDGTITKVLKDGSTLYETYVQGLLHGEITLTFPHSTTLSVIKTYDQGRLVSHKT FT FFSNGLPSQEEVFQEDGSLTVTRWPDNKSNDTITEPYFIETTYQGRVIEGSYSSFNGKY FT TSTIRNGEGVRSNFSPNNVLLYEEIFNDGVMVKRTTFYATRDPETITHYVNGQPHGLRL FT TYLPGGIPNTIEEWRYGYQDGTTTVFKNGCKAAEIPFVKGAKEGCELRYNEEEVIAEEV FT SWRNNLPHGMRKIYAAGVYKCEWYHRGRLVSKTKFERLNNAG" FT misc_feature complement(155401..155469) FT /note="Signal peptide predicted for CAB144 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.467 between residues 23 and 24" FT misc_feature complement(155425..155457) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(155466..157850) FT /transl_table=11 FT /gene="pheT" FT /locus_tag="CAB145" FT /product="phenylalanyl-tRNA synthetase beta chain" FT /EC_number="6.1.1.20" FT /note="Similar to Chlamydia pneumoniae phenylalanyl-tRNA FT synthetase beta chain PheT or cpn0594 or cp0154 FT SWALL:SYFB_CHLPN (SWALL:Q9Z7W0) (792 aa) fasta scores: E(): FT 1e-183, 59.11% id in 795 aa, and to Escherichia coli FT phenylalanyl-tRNA synthetase beta chain PheT or b1713 FT SWALL:SYFB_ECOLI (SWALL:P07395) (795 aa) fasta scores: E(): FT 1e-46, 27.1% id in 808 aa" FT /db_xref="GOA:Q5L6W7" FT /db_xref="InterPro:IPR002547" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6W7" FT /protein_id="CAH63603.1" FT /translation="MRVSLSSLQRFFSSPLSIKQIIEACDHIGIETEIETLLSSSFSSI FT ITAKIIQTLPHPNADKLVVATLFDGKQEHQVVCGAPNCRPDIIVPLALPGAKLHDHEGN FT PYTIKKSKLRGIESQGMCCGADELGFSHLQKTERGLFEFPANTPLGESACALLADTWIE FT FSLTPNLGHCASLLGLAREIAHVTHVDLILPQEFSFSPLEIITKDSPSHDTSICPFFCC FT VKISGVCAETSPQELQQALSQFKQKSINTIVDITNYIMLAMGQPLHVYDAKTVDIDSLH FT AEKAQEQHGLKLLNNEEVLIPQGTAIICDKNHTVGLAGVMGSGDSSFNETTTDIILEAA FT YFLPKAIRASQMRIPLHSEAAYRFTRGTDPDHVLPSLYAAIHYIQKLFPKAKVAPIHVL FT GSIPPSPTLTLRTEMVERVLGVPLSHSQVHEELASLGFTVTPQDQGSLSVQVPAYRHDI FT REEIDLVEEMCRTQPWKIEKKKAPATYSPLYAFKREIVDFLAQSGLQQFFTCDLLDMET FT AALHRQETDYIALQGSKHATVLRDSLLPGLLKSTATNLNRQAPYVHAFELGTIYTKKNA FT QYQETQSLGIILSGEAEELSWVFHERVLSFYSIKGWLERLFRHFYISSKTYTIRPSEHP FT SFHPYQQADLYLHKHLLGRFGTLHPQLCKKAHIKHPVFFAELSVDSLLHTQKKAIARYQ FT PYPIYPSSFRDITLTVDESVPADALRKKLLSFPSKWLENVSIISIYQNKNPTAQNKNVS FT LRLVFQNKERTLSNQEIEEEHERLLAMLNEQLDDTKGTIDS" FT misc_feature complement(155499..155762) FT /note="Pfam match to entry PF03147 FDX-ACB, Ferredoxin-fold FT anticodon binding domain , score 117.0, E-value 2.4e-32" FT misc_feature complement(156429..156638) FT /note="Pfam match to entry PF03484 B5, tRNA synthetase B5 FT domain , score 65.4, E-value 8e-17" FT misc_feature complement(156954..157394) FT /note="Pfam match to entry PF03483 B3_4, B3/4 domain , FT score 150.2, E-value 2.3e-42" FT misc_feature complement(157395..157718) FT /note="Pfam match to entry PF01588 tRNA_bind, Putative tRNA FT binding domain , score 116.4, E-value 3.5e-32" FT CDS 157958..159043 FT /transl_table=11 FT /locus_tag="CAB146" FT /product="putative exported protein" FT /note="Similar to Chlamydia pneumoniae hypothetical protein FT cpn0593/cp0155/cpj0593 cpn0593 or cp0155 or cpj0593 FT SWALL:Y593_CHLPN (SWALL:Q9Z7W1) (362 aa) fasta scores: E(): FT 1.9e-78, 54.27% id in 363 aa. Only significant database FT matches are to predicted Chlamydiaceae proteins." FT /db_xref="GOA:Q5L6W6" FT /db_xref="InterPro:IPR018392" FT /db_xref="UniProtKB/TrEMBL:Q5L6W6" FT /protein_id="CAH63604.1" FT /translation="MTWRKTIRWLKQALVLSAVLNIVFLLLFYSTIFRKDIYKLRLFSG FT PLVAKNCRVQKIPEDFLERLSEASLEELYRLLDEDHLLYGRPLKLWALSVAIHAYDVDV FT GGALSHPLTFTQLRSQGKTWLLPNIDEKEYGLVRRYLSRERYPFTTRGLFRAISTHLEQ FT GAVDEDCLYHFCHTPEFLYFRTLLCGAEERVSSVASLARMVIHNGEAMFFSLCNENHRA FT TAISPEQRQKVLLTYTSVGEPLAALLLLVYDADWVLHTFTDEDLKTFVALLPKESPYTQ FT DFIHRIVETPRSFIVEAEKAEACVTEEPIVYEDYVVKEGDSLWLIARRFGVTIEDIMRV FT NHLSHHRLLPGKHLKLPPKSS" FT misc_feature 157958..158059 FT /note="Signal peptide predicted for CAB146 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.871) with cleavage site FT probability 0.569 between residues 34 and 35" FT misc_feature 158900..159028 FT /note="Pfam match to entry PF01476 LysM, LysM domain , FT score 67.1, E-value 2.5e-17" FT CDS complement(158967..159278) FT /transl_table=11 FT /locus_tag="CAB147" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae hypothetical protein FT cpn0592/cp0156/cpj0592 cpn0592 or cp0156 or cpj0592 FT SWALL:Y592_CHLPN (SWALL:Q9Z7W2) (103 aa) fasta scores: E(): FT 3.7e-25, 62.37% id in 101 aa" FT /db_xref="InterPro:IPR002696" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6W5" FT /protein_id="CAH63605.1" FT /translation="MSFKQLLYNLPTHLCCGLIHLYRWTISPLLGSPCRFFPSCSQYAL FT QALKHHKCIRGLWLTIKRIGKCGPWHPGGIDLVPMTTLEEALDVSQVTNDDDSGDSHA" FT misc_feature complement(159045..159248) FT /note="Pfam match to entry PF01809 DUF37, Domain of unknown FT function DUF37 , score 128.3, E-value 9.1e-36" FT CDS complement(159268..160062) FT /transl_table=11 FT /locus_tag="CAB148" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae yage family yage or FT cpn0591 or cp0157 SWALL:Q9Z7W3 (EMBL:AE001643) (216 aa) FT fasta scores: E(): 2.9e-73, 84.57% id in 214 aa" FT /db_xref="InterPro:IPR003734" FT /db_xref="UniProtKB/TrEMBL:Q5L6W4" FT /protein_id="CAH63606.1" FT /translation="MRCTAHCTASSYNLHVLFHLLKTRFPTVLSREYVLVSSENPEECD FT KIAVFFPFGVAVFWGWEESEEIKILQSIVTASPEILPQPEIDCYNFHYGEKLQIRRDRL FT ILADSQLNTKLAISFGLAQSVKLTIFEATIYKTIEDSKRLPQDLATKGKISMPRKAIAK FT KIGKLFLDKASVNLHSDILDEPDFFWEHPETQPIYIDVLNCLDINARINVLNHRLTILG FT DVLEILNDQLNHQHSSSLEWTIIWLIMLEVSVALLKDVFNVI" FT misc_feature complement(159415..160062) FT /note="Pfam match to entry PF02582 DUF155, Uncharacterized FT ACR, YagE family COG1723 , score 440.6, E-value 9e-130" FT tRNA 160175..160256 FT /gene="tRNA-Leu" FT /product="transfer RNA-Leu" FT /note="anticodon GAG, Cove score 51.78" FT CDS 160344..160934 FT /transl_table=11 FT /locus_tag="CAB149" FT /product="putative lipoprotein" FT /note="Similar to Chlamydia muridarum hypothetical protein FT Tc0756 tc0756 SWALL:Q9PJS2 (EMBL:AE002343) (209 aa) fasta FT scores: E(): 5.4e-47, 58.11% id in 191 aa. Only significant FT database matches are to predicted Chlamydiaceae proteins." FT /db_xref="UniProtKB/TrEMBL:Q5L6W3" FT /protein_id="CAH63607.1" FT /translation="MRFLSIFLFVFSFITSCSLPVCSEHYISEDEKFHIDRFNFSGEFP FT DMETMEIHAQRKKRVHFDVSGDFPKLESIVYNGSFGFLRAKLTGRYPKLTSLMISCSSC FT KMDLDFRGKWERNATISLSNEVEPLTLTLPKNVGVIVHTKVSTKGKVVLEGDFEKRGRG FT IWRKTYHNSLVGIAPVTLVFEVQSSSGGTITLR" FT misc_feature 160344..160412 FT /note="Signal peptide predicted for CAB149 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.739) with cleavage site FT probability 0.575 between residues 23 and 24" FT misc_feature 160362..160394 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(160908..161633) FT /transl_table=11 FT /gene="recO" FT /locus_tag="CAB150" FT /product="DNA repair protein" FT /note="Similar to Bacillus subtilis DNA repair protein RecO FT SWALL:RECO_BACSU (SWALL:P42095) (255 aa) fasta scores: E(): FT 0.11, 21.94% id in 237 aa, and to Chlamydia pneumoniae DNA FT repair protein RecO or cpn0589 or cp0159 or cpj0589 FT SWALL:RECO_CHLPN (SWALL:Q9Z7W5) (252 aa) fasta scores: E(): FT 6.1e-47, 51.07% id in 233 aa" FT /db_xref="GOA:Q5L6W2" FT /db_xref="InterPro:IPR003717" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6W2" FT /protein_id="CAH63608.1" FT /translation="MHTLTPAITLKTLPQGKHHCITTIFSPLGLLTFFAKQGQSLYYDF FT REALIPLSLGVYNLDHSPPKMRKLLFAEVKNTFTTIKSELPLLQAAGKMTQSILGSQWQ FT EKPSQELFSLFLNFLHRLPESKNPEMFAATFLLKLLQYEGILDLSTTCAACKKTILSAS FT FYRHKGRKFCIEHSPESAVMIENEEEKILHALVHAKRFQDLLHLSNFHLEFSEKITLMF FT DSVFHEDKHKKLPQSNGSA" FT misc_feature complement(160911..161633) FT /note="Pfam match to entry PF02565 RecO, Recombination FT protein O , score 211.2, E-value 1e-60" FT CDS complement(161638..162222) FT /transl_table=11 FT /locus_tag="CAB151" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae ct469 hypothetical FT protein cpn0588 or cpj0588 or cp0160 SWALL:Q9Z7W6 FT (EMBL:AE001643) (181 aa) fasta scores: E(): 3.6e-40, 58.91% FT id in 185 aa. Only significant full-length database matches FT are to Chlamydiaceae proteins." FT /db_xref="UniProtKB/TrEMBL:Q5L6W1" FT /protein_id="CAH63609.1" FT /translation="MTIMSSSNQLSHQDSTSFNDQVTTNTDSLTIFDPIRYKILASTPE FT EKVRQELITCLVEELHYPPSLIIVEKGLKTLFPLLSRKEIRLPRRRPDLLVITPATYTD FT AEGKTYNLGEPRPLLLIECKARVINQQTLNQLLSYNYIIGSPCISVVCYKKQQTGFLNP FT KTHTLDFYPGLPCYSQLISYYLTLNSVQPIN" FT CDS complement(162167..162850) FT /transl_table=11 FT /locus_tag="CAB152" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae hypothetical protein FT YvyD or cpn0587 or cp0161 SWALL:Q9Z7W7 (EMBL:AE001643) (228 FT aa) fasta scores: E(): 1.7e-40, 52.65% id in 226 aa. No FT other significant database matches" FT /db_xref="GOA:Q5L6W0" FT /db_xref="InterPro:IPR016968" FT /db_xref="UniProtKB/TrEMBL:Q5L6W0" FT /protein_id="CAH63610.1" FT /translation="MHTPQRRATQRKKAPKHEVANLEITGKSFHVSQPLRQLIIEKSSQ FT LPPLDAIHIVLTSHKEKQGTEVHLTAMGRKETFQVKTQHNNSYSAVIAAFKKIRTLANK FT HQKIRQDKKKHDKGLSKKEEQILELEEDIHLYDDLLPLETMDAWDSLKYYGYIPGSAKK FT VLSRKKIHLPILSEDEAIKKFEASHNKVLVFLNEKEHKIQLIHKQNDDNYVLIEPIIAP FT GFHIF" FT tRNA complement(162971..163044) FT /gene="tRNA-Arg" FT /product="transfer RNA-Arg" FT /note="anticodon TCG, Cove score 75.48" FT CDS complement(163150..164310) FT /transl_table=11 FT /locus_tag="CAB153" FT /product="putative sigma-54 dependent response regulator" FT /note="Similar to Chlamydia pneumoniae sigma-54 dependent FT response regulator cp0162 SWALL:Q9K2D1 (EMBL:AE002177) (394 FT aa) fasta scores: E(): 6.5e-119, 77.97% id in 386 aa" FT /db_xref="GOA:Q5L6V9" FT /db_xref="InterPro:IPR002078" FT /db_xref="UniProtKB/TrEMBL:Q5L6V9" FT /protein_id="CAH63611.1" FT /translation="MTIEKVLIVDDEPLLRDFLSELLLTRGLSPFTADNVKQGCHKIKT FT EKYDLIISDMNMPDGTGLDIIKTSKEFAPHTPVLVITAYGTIENAVKAMHHGAFNYLTK FT PFSSEALFAFIAKAEELQNLVNENLLLKSQISSESHPLIAESPAMKDLLSKARKAADSS FT ANIFIHGESGCGKEVLSFFIHRNSPRASCPYIKVNCAAIPETLLESEFFGHEKGAFTGA FT TGKKAGRFELAHTGTLLLDEITEVPINLQAKLLRAIQEKEFEHLGGTKTLSVDVRILAT FT SNRNLKEAVDQKIFRQDLFYRLNVIPLYLPPLRERKDDILPLSQYFLEKFCRLNNKPMK FT TLSESAKSALLDYPWPGNIRELSNVLERAVILESPTHLTETMLALS" FT misc_feature complement(163219..163248) FT /note="PS00688 Sigma-54 interaction domain C-terminal part FT signature." FT misc_feature complement(163222..163887) FT /note="Pfam match to entry PF00158 Sigma54_activat, FT Sigma-54 interaction domain , score 423.3, E-value FT 1.5e-124" FT misc_feature complement(163942..164301) FT /note="Pfam match to entry PF00072 response_reg, Response FT regulator receiver domain , score 116.2, E-value 4.1e-32" FT CDS 164494..167532 FT /transl_table=11 FT /locus_tag="CAB154" FT /product="conserved membrane protein" FT /db_xref="UniProtKB/TrEMBL:Q5L6V8" FT /protein_id="CAH63612.1" FT /translation="MTSSIPNTSVFSSHPETLGSRLSLFSDLTPLERGEVSSSWKEKCQ FT RASCIGLFCLSLLTICAGVLVLTLLPTTPVFLGIVFIAIGSVLLVTSLLLHASLRPSKK FT ITTQQVNIRDLQTQLQGLLATTNARSLAINGFDPNGNAELIIQEREALLAKFDRDLRRK FT EVALYRFLSSGTENRYPVLCDLSAFREMQERISDELELLYRSYNHHIRGTVEANPDERL FT LILHQERNLLIQQLADMGIEKANQTEALVDLQSTLDVLNQNIRLLEDQIAQNSSHGQQH FT AGLVSGLQPLLQERNTLLIRLSLIYEALISLAKQEEELTSRRIDLDKDIEVVVESRAER FT ITFNNEYRERFLRSSGNINQLTNNLREKEATLLALTQEVEALHEEVERLRNRPFGGEYT FT QQDIERYRNALTVKEQVVQDLEEQVVKYRRFLEEAVEVNNRITLGIQESERRSLEFAAL FT EQRERVLNHQIQVLTVDLQKHKEEHQRLRGENDDLRELVLTTESNPGSDAQIEALQKEI FT RRLTVDLETVVNERMNVSEELAIVRAELTNMELRYVAIKEEMLSRDEENATLKMEAEEL FT RGLVVQNEENLENLQHALTNEMNLKHAVDVLRPEIDRLEQEKLSLNARMLEAVEQNRIN FT IGLLQKNEQEKEKLIQELQGLRSLHAQEKESLQEEITKLQKEMHERHLHHLEETSRLRL FT ENNQLESLLKDAQRMGEHSHEGALRMLGSQLIVLSSHIKQRSKSEIQSAGDVMEMLAFT FT SPRFFGNLGAGISCRSLRPGVYLEAELPVDASDEQKRVVIEQRCLREWFFALLGHFTVE FT QIESLSQRARDLVQEAGEQASAHELFDQLASEFSEIRDASGALSQWLSTCYSYVTNLQI FT FNNYFEWSGFLFSLLQKMHKGTGGILHNLSEEEQQFFKIVSNFSGRVPLVLGSIGHSEG FT TTPGAANPLGDLNFENVGNITWSRFIRIIEGLLEARSSLSGPMILEMSDIRESVVRTIS FT SNVYTDMLTEKYSPTTWTPPADL" FT misc_feature join(164635..164703,164716..164784) FT /note="2 probable transmembrane helices predicted for FT CAB154 by TMHMM2.0 at aa 48-70 and 75-97" FT CDS complement(167548..168600) FT /transl_table=11 FT /gene="atoS" FT /locus_tag="CAB155" FT /product="putative 2-component regulatory system-sensor FT histidine kinase" FT /note="Similar to Chlamydia trachomatis 2-component FT regulatory system-sensor histidine kinase atos or ct467 FT SWALL:O84473 (EMBL:AE001320) (352 aa) fasta scores: E(): FT 4.9e-85, 64.82% id in 344 aa" FT /db_xref="GOA:Q5L6V7" FT /db_xref="InterPro:IPR013767" FT /db_xref="UniProtKB/TrEMBL:Q5L6V7" FT /protein_id="CAH63613.1" FT /translation="MSNNDCKSCSSTQELMEIKSRITQSYKEADTILTAIPDGIILISE FT VGNILICNSQAREILGIPDELEILHKPFTDFFPETFFGFSLNEALVSLPSPKTLRLTLS FT KNDQDRDVEIFVRKNPLNGFLFLLIRDRSEYKQLENVIERYKNIAELGKMTATLAHEIR FT NPLSGIAGFASLLKEELPSPRHQRMLASIIDGTRSLNTLVSSMLEYTKSQPLNLKAIDL FT QEFFSSLIPLLSITFPFCTFERETSTSIVRSIDPDRMNSVVWNLVKNAAEATESPITLT FT LHKSGDISVTNPGQLPQEILDKLFIPFFTTKAQGNGLGLAEALKIMRLHGGGIHVENAN FT GHITFTLKLP" FT misc_feature complement(167551..167841) FT /note="Pfam match to entry PF02518 HATPase_c, Histidine FT kinase-, DNA gyrase B-, and HSP90-like ATPase , score 78.4, FT E-value 9.7e-21" FT misc_feature complement(167956..168153) FT /note="Pfam match to entry PF00512 HisKA, His Kinase A FT (phosphoacceptor) domain , score 71.6, E-value 1.1e-18" FT misc_feature complement(168322..168522) FT /note="Pfam match to entry PF00989 PAS, PAS domain , score FT 23.1, E-value 5.9e-06" FT CDS complement(168581..168970) FT /transl_table=11 FT /locus_tag="CAB156" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae ct466 hypothetical FT protein cpn0583 or cpj0583 or cp0165 SWALL:Q9Z7X1 FT (EMBL:AE001643) (106 aa) fasta scores: E(): 1.4e-23, 72.38% FT id in 105 aa. Only significant database matches are to FT predicted Chlamydiaceae proteins. Note the differing FT N-termini and the alternative possible translational start FT sites at codon 19 and 22" FT /db_xref="UniProtKB/TrEMBL:Q5L6V6" FT /protein_id="CAH63614.1" FT /translation="MLINSLVVFFKKSYVPNLLLPMKEQALLLLLKKKKGFFLAILDLT FT ETETSLTPIELEKVLQQKKTLLSCIDKVDNEIKEFRHNFTSVLPQEIQDELSDIRGIIT FT RILDTDKLNYLQRKKELGIYEQQRL" FT tRNA complement(168996..169078) FT /gene="tRNA-Leu" FT /product="transfer RNA-Leu" FT /note="anticodon CAA, Cove score 64.83" FT CDS complement(169139..169804) FT /transl_table=11 FT /locus_tag="CAB157" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae ct465 hypothetical FT protein cpn0582 or cpj0582 or cp0166 SWALL:Q9Z7X2 FT (EMBL:AE001642) (225 aa) fasta scores: E(): 3.1e-28, 42.58% FT id in 209 aa.Only significant full-length database matches FT are to Chlamydiaceae proteins." FT /db_xref="UniProtKB/TrEMBL:Q5L6V5" FT /protein_id="CAH63615.1" FT /translation="MLFPLVCACSKATETAHRHIRARRITSQHGHSVIIYPEIQDSPLP FT QYPWPTPQQSVITAYSFHCRGSLSAKETEQETLYDCDGLHHSLCKKFSIHPRIIDITRL FT LHKEYPLSIVEGFCCYKHFRFLTASGESLSTKHLSGNAALLFTEKAIRLETLRSIFSPL FT YKKQSIYPCSIDFTTTQTTIGNEEFRITLIPKDTGNYLSIEMLYDLETLRPIEVPPSP" FT CDS 169965..170654 FT /transl_table=11 FT /locus_tag="CAB158" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae phosphoglycolate FT phosphatase cpn0581 or cpj0581 SWALL:Q9Z7X3 (EMBL:AE001642) FT (230 aa) fasta scores: E(): 2.3e-44, 50.66% id in 227 aa, FT and to Chlamydia pneumoniae hydrolase, haloacid FT dehalogenase-like family cp0167 SWALL:Q9K2C9 FT (EMBL:AE002178) (244 aa) fasta scores: E(): 2.5e-44, 50.66% FT id in 227 aa" FT /db_xref="GOA:Q5L6V4" FT /db_xref="InterPro:IPR006402" FT /db_xref="UniProtKB/TrEMBL:Q5L6V4" FT /protein_id="CAH63616.1" FT /translation="MNIHDYQVFFFDFDGLVIDTEPLYYRAFLTACRERGLDTAMDFST FT YYLFSMLGREVFKQKFLELFPNTESFFPQCFYDRERIYKELIQTEVPPLLPGVEDFLRF FT LLAEHKTIGVVTNSSYVLTQRFCEAIPILNQFQFWVTREDYDRPKPYPDSYQYAYQAFV FT QEGEKVVGFEDSVKGLRALAGIPATLVAVNAMMPLSRDSHQDFRDKEFYYFSSFKELML FT HSGVQNQ" FT misc_feature 169980..170549 FT /note="Pfam match to entry PF00702 Hydrolase, haloacid FT dehalogenase-like hydrolase , score 82.8, E-value 4.5e-22" FT CDS complement(170600..171406) FT /transl_table=11 FT /gene="truA" FT /locus_tag="CAB159" FT /product="putative tRNA pseudouridine synthase a" FT /EC_number="4.2.1.70" FT /note="Similar to Chlamydia pneumoniae tRNA pseudouridine FT synthase a TruA or cpn0580 or cp0168 SWALL:TRUA_CHLPN FT (SWALL:Q9Z7X4) (267 aa) fasta scores: E(): 3.3e-75, 65.78% FT id in 266 aa, and to Escherichia coli tRNA pseudouridine FT synthase a TruA or HisT SWALL:TRUA_ECOLI (SWALL:P07649) FT (270 aa) fasta scores: E(): 4.2e-25, 35.2% id in 250 aa" FT /db_xref="GOA:Q5L6V3" FT /db_xref="InterPro:IPR020094" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6V3" FT /protein_id="CAH63617.1" FT /translation="MTQVVILLAYQGTAYAGWQRQPNDLSIQEVIENSLAQVVGKRIPV FT TSSGRTDAEVHAFGQVAHFSQPDHPQFSQASSIKKMLNALLPKDIVIRDVVLGDDKFHS FT RFSAIAKEYRYVLTRSPKPLPWERYFAYYPRHHLKTDLMQEGAQYLLGTHDFASFANHG FT RDYTSTIRTLFNLDIVDHGETVTIICRGNGFLYKMVRNIVGSLLDISRGKYPPEYIQEI FT LMQKNRRQGPPAAPSHALSLYHVCYPKPYHWFCTPECNINSLKEEK" FT misc_feature complement(170663..170971) FT /note="Pfam match to entry PF01416 PseudoU_synth_1, tRNA FT pseudouridine synthase , score 110.8, E-value 1.7e-30" FT misc_feature complement(171086..171391) FT /note="Pfam match to entry PF01416 PseudoU_synth_1, tRNA FT pseudouridine synthase , score 105.6, E-value 6.4e-29" FT CDS complement(171403..172056) FT /transl_table=11 FT /gene="ispD" FT /locus_tag="CAB160" FT /product="putative 2-c-methyl-D-erythritol 4-phosphate FT cytidylyltransferase" FT /EC_number="2.7.7.60" FT /note="Similar to Escherichia coli 2-c-methyl-D-erythritol FT 4-phosphate cytidylyltransferase IspD or SWALL:ISPD_ECOLI FT (SWALL:Q46893) (235 aa) fasta scores: E(): 1.6e-09, 30.76% FT id in 221 aa, and to Chlamydia pneumoniae FT 2-c-methyl-D-erythritol 4-phosphate cytidylyltransferase FT IspD or cpn0579 or cp0169 SWALL:ISPD_CHLPN (SWALL:Q9Z7X5) FT (211 aa) fasta scores: E(): 1.3e-55, 64.11% id in 209 aa" FT /db_xref="GOA:Q5L6V2" FT /db_xref="InterPro:IPR018294" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6V2" FT /protein_id="CAH63618.1" FT /translation="MYGVSMDPKCSLILLSGGKGERFGANQPKQYLPFRGEPLILHALN FT MALRIPEISEIIVVCDVNYESIFEGYPVKFARPGTRRQDSVFSGLQQVANPWVLVHDGV FT RPFIYPDEVTELVTAAYQTGAATLVSNVPYTIKQRDPVKTLDRDALSIVHTPQCIKTQI FT LLEGLERANQERITLVDDTQAAELLNLPVALVFNKHPQIKVTYPEDLTLAHALL" FT misc_feature complement(171406..172029) FT /note="Pfam match to entry PF01128 IspD, Uncharacterized FT protein family UPF0007 , score 102.7, E-value 4.7e-28" FT CDS complement(172031..173005) FT /transl_table=11 FT /locus_tag="CAB161" FT /product="putative exported protein" FT /note="Similar to Chlamydia pneumoniae hypothetical protein FT cpn0578/cp0170/cpj0578 precursor cpn0578 or cp0170 or FT cpj0578 SWALL:Y578_CHLPN (SWALL:Q9Z7X6) (320 aa) fasta FT scores: E(): 6.5e-86, 62.92% id in 321 aa" FT /db_xref="GOA:Q5L6V1" FT /db_xref="InterPro:IPR004843" FT /db_xref="UniProtKB/TrEMBL:Q5L6V1" FT /protein_id="CAH63619.1" FT /translation="MVLASLSIAVGVPLAAFSWANFIEPNWLQTSLLTWKLPKKYSYLH FT GLRIAQISDLHFHKFVPKKFLKKVSLKLSKFAPDILLISGDFLCRAQIEDRPRLEAFLH FT TLHAPLGTFAVLGNHDYQSYVSRNSQGKIDVISMENSQPLKRAFVSISQGLFGSRRYTY FT APSLEKQEPNTELLHLLKNTPIRLLHNESLQIPDMLNIVGLGDLFAKQFDPEKAFFNYN FT PTLPGIILSHNPDTVYRLLDYPGDMIFSGHSHGPQISIPWPKFAHKIMNKTSGLENPDL FT ARGHFFFAEGKKQLYVNRGLGGFKRLRFCSPPEICCVRCVYGS" FT misc_feature complement(172238..172867) FT /note="Pfam match to entry PF00149 Metallophos, FT Calcineurin-like phosphoesterase , score 75.6, E-value FT 6.9e-20" FT misc_feature complement(172946..173005) FT /note="Signal peptide predicted for CAB161 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.814) with cleavage site FT probability 0.531 between residues 20 and 21" FT CDS complement(173077..173340) FT /transl_table=11 FT /locus_tag="CAB162" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae SwiB cpn0577 or FT cpj0577 or cp0171 SWALL:Q9Z7X7 (EMBL:AE001642) (87 aa) FT fasta scores: E(): 1.1e-26, 85.05% id in 87 aa, and to FT Chlamydia muridarum hypothetical protein Tc0745 FT SWALL:Q9PJT3 (EMBL:AE002343) (86 aa) fasta scores: E(): FT 7.3e-25, 78.16% id in 87 aa" FT /db_xref="InterPro:IPR019835" FT /db_xref="UniProtKB/TrEMBL:Q5L6V0" FT /protein_id="CAH63620.1" FT /translation="MSQKNKNSAFMNPVNITSDLAAIVGKGPMPRTEIVKKVWDYIKKR FT NLQDPKNKRNILPDEALAKVFGSKNPIDMFQMTKALSSHIVK" FT misc_feature complement(173080..173313) FT /note="Pfam match to entry PF02201 SWIB, BAF60b domain of FT the SWIB complex , score 135.2, E-value 7.8e-38" FT CDS join(173622..173690,173692..174729) FT /transl_table=11 FT /gene="prfB" FT /locus_tag="CAB163" FT /product="putative peptide chain release factor 2" FT /note="Similar to Bacillus subtilis peptide chain release FT factor 2 PrfB SWALL:RF2_BACSU (SWALL:P28367) (366 aa) fasta FT scores: E(): 1.7e-62, 52.66% id in 319 aa, and to Chlamydia FT pneumoniae peptide chain release factor 2 PrfB or cpn0576 FT or cp0173 or cpj0576 SWALL:RF2_CHLPN (SWALL:P56906) (369 FT aa) fasta scores: E(): 4.8e-110, 79.26% id in 328 aa. PF-2 FT carries a uga in-frame termination codon and frameshift FT after leu-23 which is suppressed providing a mechanism for FT the protein to regulate its own production" FT /db_xref="GOA:Q5L6U9" FT /db_xref="InterPro:IPR004374" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6U9" FT /protein_id="CAH63621.1" FT /translation="MHESLDKRLEGLLTGLALAGRSLDLEGKRQELSILEEQTLKEDFW FT QDVTSAGKVSERIVSLKRQIAHYEEFKVRVENLAFFLNDGDVSADPELREDLEKEFTIC FT EHILSEWETQRLLSGEVDKNPCFLTINAGAGGTESCDWVEMLFRMYCRWAAQHQWKVEV FT IDRQEGDVAGIKHVTVKFSGDYAYGYAKAERGVHRLVRISPFDSNAKRHTSFASVDVYP FT EIDDEIEIDIRPNDLRIDTFRSSGAGGQHVNVTDSAVRITHIPTGIMVSCQRERSQIQN FT RESCMKMLRARMYQQILQERLEKQLLDRKNKKEIAWGSQIRNYVFQPYTLVKDVRTGHE FT TGNVQAMMDGELLDDFVKAYLAEYGEIS" FT misc_feature 173691..173693 FT /note="PF-2 carries a uga in-frame termination codon after FT leu-23 which is suppressed providing a mechanism for the FT protein to regulate its own production" FT misc_feature 173869..174201 FT /note="Pfam match to entry PF03462 PCRF, PCRF domain , FT score 190.7, E-value 1.5e-54" FT misc_feature 174289..174630 FT /note="Pfam match to entry PF00472 RF-1, Peptidyl-tRNA FT hydrolase domain , score 244.8, E-value 7.7e-71" FT misc_feature 174349..174399 FT /note="PS00745 Prokaryotic-type class I peptide chain FT release factors signature." FT CDS 174726..175238 FT /transl_table=11 FT /locus_tag="CAB164" FT /product="putative transferase" FT /note="Similar to Chlamydia pneumoniae amino group acetyl FT transferase YhhY or cpn0575 or cp0174 SWALL:Q9Z7X8 FT (EMBL:AE001642) (171 aa) fasta scores: E(): 1.8e-56, 78.57% FT id in 168 aa" FT /db_xref="GOA:Q5L6U8" FT /db_xref="InterPro:IPR016181" FT /db_xref="UniProtKB/TrEMBL:Q5L6U8" FT /protein_id="CAH63622.1" FT /translation="MTENKDTGVPGLDIRYTLPSDAVYMRQWLNDPKILRGFPLKTEAE FT IHDSVNFWVGFYRYHSSLTAVYEGEVAGVATLILNPYIKVSHHALVSIIVGEPYRNQGV FT GTALLNNLCHLAKTRFHLEILYLEVYEENPAISLYKRFGFIEVGRQKQFYKDEIGYLAK FT IIMEKQL" FT misc_feature 174912..175160 FT /note="Pfam match to entry PF00583 Acetyltransf, FT Acetyltransferase (GNAT) family , score 74.6, E-value FT 1.3e-19" FT CDS join(175278..175364,175364..175510,175510..175827) FT /pseudo FT /transl_table=11 FT /locus_tag="CAB165" FT /product="conserved hypothetical protein (pseudogene)" FT /note="Similar to Chlamydia pneumoniae hypothetical protein FT cpn0574 or cp0175 SWALL:Q9Z7X9 (EMBL:AE001642) (184 aa) FT fasta scores: E(): 4.2e-39, 60% id in 185 aa. No other FT database matches. Possible pseudogene arising from two FT frameshift mutations." FT CDS 175817..176533 FT /transl_table=11 FT /locus_tag="CAB166" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia muridarum hypothetical protein FT Tc0742 tc0742 SWALL:Y742_CHLMU (SWALL:Q9PJT5) (238 aa) FT fasta scores: E(): 1.4e-79, 85.65% id in 237 aa" FT /db_xref="InterPro:IPR017856" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6U7" FT /protein_id="CAH63624.1" FT /translation="MAGHSKWANTKYRKERADHKRGKIFSRTIKELMAAVKMGGPDPKT FT NARLRMIIQKAKDQNIPNENIERNLKKATSADQKNFENVTYELYGHGGVGIIVEAMTDN FT KNRTASDMRIAVNKRGGSLVEPGSVLYNFVRKGACYVPKSSIDEAVLLPHVIDVGAEDL FT DNDDDEHFLVLCDPVELASVKEKLTALGVACSEEKLIYVPLRLVDCDEQDGEANLALIE FT WLEKIDDVDEVYHNMA" FT misc_feature 175829..176530 FT /note="Pfam match to entry PF01709 DUF28, Domain of unknown FT function DUF28 , score 260.4, E-value 1.6e-75" FT CDS complement(176574..179186) FT /transl_table=11 FT /locus_tag="CAB167" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae protein cpn0572 or FT cp0177 or cpj0572 SWALL:Y572_CHLPN (SWALL:Q9Z7Y1) (755 aa) FT fasta scores: E(): 2.5e-77, 40.89% id in 802 aa. Only FT significant full-length database matches are to predicted FT Chlamydiaceae proteins." FT /db_xref="InterPro:IPR011443" FT /db_xref="UniProtKB/TrEMBL:Q5L6U6" FT /protein_id="CAH63625.1" FT /translation="MSSPINNQPITNVTTTTTTTPVVTTSTSFGGHVVSTTGTEAAETT FT SQTVNTTAEQAVSQAESDAGAVVFTTERSVSTTSPSTGSVGTTATAANLLGSQILGLGR FT SRTDSTSSSDSDALSDISSTPSSHDSGNVGSTEDLTSTSGDVDLGDLEGLRGTEAADGA FT ARPDGPGGLPDMALPKYDPTDKASIIKFLSTPSVQAKLQTKAGHIVYMDEARGSFIFVR FT NGDWSTAESIAVTNGKTKEPITDVKDLEMCIAKFCVGYETMHADWTNNIQPRIAGQTGE FT TGHYDHLLMSMKFKTTVLYGPWNSKESSSNYTPSVWRRGTKCESGAIWGDVGGLKGINW FT NNVQRPNEGMVFSRETSSPTQQQPQPVPYAQPVINVNLGGISTSVNVTGGTTTTTVTST FT TTQPTDTSDNGVDNDQNVDETNFDDTETESTGTQEDHSIQFSDEGNGFDSLEPAPPGPP FT PPTQGGVNITGMPKDSLQQVLQNVRQHLDTVYDQNSEHHEGNQDLGTVVRTSENGAYKP FT TVLLNKDQGSGGGGVQRRESNDNEDSELGNILGRVREHLDVVYPEGGNGEAIPVNQNLG FT EVIRDVEAGKTPKPTQPEGIFVAKRVNVDANGEIVNNNSKTETGSRTNTRIETGSRTSN FT LMGATSGDGPEGLEHLLPQLRAHLDESFDAQGNLITPQKTNVGKLVKAFQERTGSGGIV FT APMPAQSTVIASRPVQQQSATISVLPQAQTAETVAPREAPDLHGAARDVASSLSNLLEA FT ATPSVGQQVSTPAPQQQVASSTPVAGSRETATLTKGEAPSGIPEAAGNVIQALSNVAKK FT IQMFEQGSRLLQEALDSADTESTQRKQLADAARNVTTQLSKTLSKATGSPPPPPQRRS" FT CDS 179419..180753 FT /transl_table=11 FT /locus_tag="CAB168" FT /product="putative peptidoglycan synthesis protein" FT /note="Similar to Chlamydia pneumoniae FT udp-N-acetylglucosamine 1-carboxyvinyltransferase MurA or FT cpn0571 or cp0178 SWALL:MURA_CHLPN (SWALL:Q9Z7Y2) (458 aa) FT fasta scores: E(): 1.1e-133, 75.45% id in 440 aa, and to FT Bacillus subtilis udp-N-acetylglucosamine FT 1-carboxyvinyltransferase 1 MurA SWALL:MUA1_BACSU FT (SWALL:P70965) (436 aa) fasta scores: E(): 8.7e-35, 36.57% FT id in 432 aa" FT /db_xref="GOA:Q5L6U5" FT /db_xref="InterPro:IPR005750" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6U5" FT /protein_id="CAH63626.1" FT /translation="MAAAEVFGGCVLEGSVRVSGAKNSTTKLLVASLLSDRKCVLRNVP FT DIGDVRLTVELCRSLGSIVHWDKQAEVIEIHTPEIHMSEVSAQFSRVNRIPILLLGALL FT ARCPEGVVVPCVGGDAIGERTLNFHFEGLEQLGAKVAYDGHGYQAAAPKGLIGAYITLP FT YPSVGATENLILASVRAQGRTIIKNAALEVEILDLILFLQKAGVEITTDNDRTIEIFGC FT EDFYEVDHWVIPDKIEAASFGMAAVLTGGRVFVENAEQHLMIPFLKTLRSIGGGFSVTE FT TGIEFFYNEPLKGGVVLETDVHPGFLTDWQQPFSVLLSQAEGSSVIHETVHENRLGYLR FT GLQKMGANCELFYQCLSSKACRYATGNFPHSAIIHGVTPLKASQLVIPDLRAGFAYIMA FT ALIAEGGPSLIKNTQLLDRGYYNWVDKLNSLGAKIHLLSLDPVAF" FT misc_feature 179434..180699 FT /note="Pfam match to entry PF00275 EPSP_syntase, EPSP FT synthase (3-phosphoshikimate 1-carboxyvinyltransferase) , FT score 457.5, E-value 7.3e-135" FT CDS complement(180756..182444) FT /transl_table=11 FT /gene="ArgS" FT /locus_tag="CAB169" FT /product="putative arginyl-tRNA synthetase" FT /EC_number="6.1.1.19" FT /note="Similar to Escherichia coli arginyl-tRNA synthetase FT ArgS SWALL:SYR_ECOLI (SWALL:P11875) (577 aa) fasta scores: FT E(): 6.1e-40, 39.1% id in 578 aa, and to Chlamydia FT muridarum arginyl-tRNA synthetase ArgS or tc0739 FT SWALL:SYR_CHLMU (SWALL:Q9PJT8) (563 aa) fasta scores: E(): FT 5.8e-170, 74.51% id in 561 aa" FT /db_xref="GOA:Q5L6U4" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6U4" FT /protein_id="CAH63627.1" FT /translation="MTLLSYLSSLCREAILSAFPQIETISPDITQSTKELFGHYQCNDA FT MKLARTLKMPPRAIAESIVKQISKNNFSSIEIAGAGFINFTFSKEFLNLSLQSYSRDLS FT SGFRVQDPKKVVIDFSSPNIAKDMHVGHLRSTIIGDCLARIFTFVGHDVLRLNHIGDWG FT TAFGMLITYLQEESSEDIESLEDLTILYKKAHVRFAEDAEFKKRSQTNVVALQSGDPKA FT RKLWERICEISERAFQKIYNILDIQIEKRGESFYNPFLPEIIEDLEKKNLITVSDEAKC FT VFHEGFSIPLMVQKRDGGYNYATTDLAAMRYRVEQDHADRIIIVTDMGQSLHFQLLEAT FT ALAAGYLPNKDVFSHVGFGLVLDSEGKKFKTRSGENIKLQELLDTAIDQAVATLKKHRP FT EMSDAEITERAPVLGMNAIKYADLSSHRVSDYVFSFEKMLRFEGNTAMFILYGYVRIQG FT IKRRLGIEKLSLESAANIQEPSEEALALALLRFPEAIDITLKELCPHFLTDYLYMLTNK FT FHAFFRDCHIEGSPHQKERLYLCALVEKTLATGMHLLGLQTLDRL" FT misc_feature complement(181140..182180) FT /note="Pfam match to entry PF00750 tRNA-synt_1d, tRNA FT synthetases class I (R) , score 365.0, E-value 5e-107" FT misc_feature complement(182046..182081) FT /note="PS00178 Aminoacyl-transfer RNA synthetases class-I FT signature." FT misc_feature complement(182184..182432) FT /note="Pfam match to entry PF03485 N-Arg, Arginyl tRNA FT synthetase N terminal domain , score 100.4, E-value FT 2.3e-27" FT CDS complement(182445..183092) FT /transl_table=11 FT /locus_tag="CAB170" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae glycerol-3-p FT acyltransferase PlsC or cpn0569 or cp0180 SWALL:Q9Z7Y4 FT (EMBL:AE001641) (212 aa) fasta scores: E(): 1e-58, 61.39% FT id in 215 aa" FT /db_xref="GOA:Q5L6U3" FT /db_xref="InterPro:IPR002123" FT /db_xref="UniProtKB/TrEMBL:Q5L6U3" FT /protein_id="CAH63628.1" FT /translation="MIFTVCKFLTRVAFTLLYRHKVYGVKKHLVKGAAIIAANHNSYLD FT PIALHLSVRGCLYHLARSTLFSNRFTGWLYKEWGCYPVKKGGGNAAACKAAFEILKKKK FT KLIIYPEGERSPTGELLPGKVGVGLIAIKARVPVIPVYIGGTYDIFNRYQKFPKIWKTV FT TCVFGTPLTFDDLIDQESLNSKEAYQIATDRIMSKIAELKTWYEHGCIGEVP" FT misc_feature complement(182484..183017) FT /note="Pfam match to entry PF01553 Acyltransferase, FT Acyltransferase , score 118.8, E-value 6.6e-33" FT misc_feature complement(182830..182837) FT /note="8 x poly G tract" FT CDS complement(183089..183739) FT /transl_table=11 FT /gene="cmk" FT /locus_tag="CAB171" FT /product="putative cytidylate kinase" FT /EC_number="2.7.4.14" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 cytidylate kinase Cmk SWALL:KCY_ECOLI FT (SWALL:P23863) (227 aa) fasta scores: E(): 8.9e-22, 42.46% FT id in 219 aa, and to Chlamydia pneumoniae cytidylate kinase FT Cmk or cpn0568 or cp0181 SWALL:KCY_CHLPN (SWALL:Q9Z7Y5) FT (216 aa) fasta scores: E(): 5.1e-51, 70.61% id in 211 aa" FT /db_xref="GOA:Q5L6U2" FT /db_xref="InterPro:IPR011994" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6U2" FT /protein_id="CAH63629.1" FT /translation="MIITIDGPSGTGKSTIAKALAKDLNFNYCNTGAMYRTLAYTYLCE FT PWKHLAIQELIDNPPFSFSFVSGQPLEAFLEGNLLSVELGTPEVANMASKLSQLPEVRF FT FMQQLQRKYAELGNCVFEGRDMGSKVFPDADVKIFLTASAEVRALRRLKDLPHNSLSKE FT AVYAQLIKRDETDSQRSLDPLVIPEGAVVLDSSDLTISQVLEKISALISPKLP" FT misc_feature complement(183113..183583) FT /note="Pfam match to entry PF02224 Cytidylate_kin, FT Cytidylate kinase , score 265.1, E-value 6.2e-77" FT misc_feature complement(183557..183577) FT /note="PS00092 N-6 Adenine-specific DNA methylases FT signature." FT misc_feature complement(183698..183721) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(183736..184656) FT /transl_table=11 FT /locus_tag="CAB172" FT /product="putative membrane protein" FT /note="Similar to Chlamydia pneumoniae phosphatidate FT cytidylyltransferase CdsA or cpn0567 or cp0182 FT SWALL:CDSA_CHLPN (SWALL:Q9Z7Y6) (308 aa) fasta scores: E(): FT 1.6e-86, 72.96% id in 307 aa" FT /db_xref="GOA:Q5L6U1" FT /db_xref="InterPro:IPR000374" FT /db_xref="UniProtKB/TrEMBL:Q5L6U1" FT /protein_id="CAH63630.1" FT /translation="MLKLNKFKTPFYGDLFQRVVVHSLVLTFLVLLLYSSLFPLTSFAL FT GFISALCSAVGTYEYGTMAKVKMYYAFRLYSAIGSFIFVLSSFIAIRWHHVLPEFVSTL FT PWCFLFVWIVINVFRSRKNICGPLETSGITLFSMLYVGIPVRLFLYILYGFIHTQEPFL FT GVWWASFLIATTKGADIFGYFFGKAFGQKKITPEISPHKTIVGFVSGCIGATLISIVFF FT LQIPARFSAFITMPSILIALGVILGISGFFGDIIESIFKRDAKIKNSNQLKAVGGTLDT FT LDSLLLSTPIVYILLLITQKSMFLK" FT misc_feature complement(183757..184167) FT /note="Pfam match to entry PF01148 CTP_transf_1, FT Phosphatidate cytidylyltransferase , score 166.7, E-value FT 2.5e-47" FT misc_feature complement(join(183769..183837,183898..183966, FT 183976..184044,184102..184170,184198..184266, FT 184303..184371,184384..184452,184471..184530)) FT /note="8 probable transmembrane helices predicted for FT CAB172 by TMHMM2.0 at aa 43-62, 69-91, 96-118, 131-153, FT 163-185, 205-227, 231-253 and 274-296" FT misc_feature complement(184525..184656) FT /note="Signal peptide predicted for CAB172 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.986) with cleavage site FT probability 0.526 between residues 44 and 45" FT CDS complement(184659..185411) FT /transl_table=11 FT /locus_tag="CAB173" FT /product="putative peptidoglycan synthetasis protein" FT /note="Similar to Chlamydia pneumoniae undecaprenyl FT pyrophosphate synthetase UppS or cpn0566 or cp0183 FT SWALL:UPPS_CHLPN (SWALL:Q9Z7Y7) (250 aa) fasta scores: E(): FT 1.8e-62, 65.2% id in 250 aa and to Micrococcus luteus FT undecaprenyl pyrophosphate synthetase uppS SWALL:UPPS_MICLU FT (SWALL:O82827) (249 aa) fasta scores: E(): 4.5e-31, 40.57% FT id in 244 aa" FT /db_xref="GOA:Q5L6U0" FT /db_xref="InterPro:IPR018520" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6U0" FT /protein_id="CAH63631.1" FT /translation="MSLTLKQADQASLSMQSLPKHVAIIMDGNRRWYRQHQAQCSIKSS FT SGHYYGAKVLPNIIESAFSLGIEVLTLFAFSTENFLRSAEEVAELFSLFHAQLDEQLPY FT LIENKIRLRCIGNLLALPPDLQQQIAKVASETQRHGMRELVLAINYGGKDELVRAFKKL FT HHDLVNKKISLDSVSEELIRLYLDTSEIPDPDLLIRTGGEMRVSNFLLWQIAYTELYVT FT DVLWPDFKPYHLLDAIKAYQHRSRRGGK" FT misc_feature complement(184662..185339) FT /note="Pfam match to entry PF01255 UPP_synthetase, Putative FT undecaprenyl diphosphate synthase , score 291.5, E-value FT 6.6e-85" FT misc_feature complement(184776..184829) FT /note="PS01066 Undecaprenyl pyrophosphate synthetase family FT signature." FT CDS 185994..187106 FT /transl_table=11 FT /locus_tag="CAB174" FT /product="conserved membrane protein" FT /note="Similar to Chlamydia pneumoniae ct449 hypothetical FT protein cpn0565 or cpj0565 or cp0185 SWALL:Q9Z7Y8 FT (EMBL:AE001641) (366 aa) fasta scores: E(): 2e-30, 32.05% FT id in 365 aa. Only significant database prokaryotic matches FT are to predicted Chlamydiaceae proteins." FT /db_xref="UniProtKB/TrEMBL:Q5L6T9" FT /protein_id="CAH63632.1" FT /translation="MKLPRICFGYVPKLAFMCTKEKGNVHYIPTARHAAKKVVSGIFAV FT LGTAAFSCSILAASMCQTFFPCIGLFILGILLFIVAYCQYGGAWTRIEIPKLRYRKPHV FT SSITEREYLSLLWKWRFLSPSVYCHQVNRNIYICEGTKDNLKKILEKRSAKKNGTILIQ FT ELDLDAIRHDQLETETQYQEVFQLPKAMLEGVKSFLRTSYSEDKIISASWPDHPPGPTP FT QEVLYTHIPGLRQGDEAYESASLLSVYTETYIEAFKAAIERVAVSRLVSREGICLLVSP FT LGVVKGLSPEALHATKTLSKTAFLQAVESLAMETVIPESKSRLRITIALVDPESVAPLR FT SVDTNVMFPSRESLSFSDFSPASSTWCHVI" FT misc_feature join(186105..186173,186192..186260) FT /note="2 probable transmembrane helices predicted for FT CAB174 by TMHMM2.0 at aa 38-60 and 67-89" FT misc_feature 187092..187100 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="PS00294 Prenyl group binding site (CAAX box)." FT CDS 187355..191569 FT /transl_table=11 FT /locus_tag="CAB175" FT /product="putative protein export protein" FT /note="Similar to Chlamydia pneumoniae protein export FT proteins SecD/SecF or cpn0564 or cp0186 SWALL:Q9Z7Y9 FT (EMBL:AE001641) (1402 aa) fasta scores: E(): 0, 65.62% id FT in 1405 aa, and to Chlamydia muridarum SecdF protein, FT putative tc0733 SWALL:Q9PJU4 (EMBL:AE002341) (1400 aa) FT fasta scores: E(): 0, 64.22% id in 1406 aa, and to FT Chlamydia trachomatis protein export SecD/SecF or ct448 FT SWALL:O84454 (EMBL:AE001318) (1400 aa) fasta scores: E(): FT 0, 64.45% id in 1404 aa" FT /db_xref="GOA:Q5L6T8" FT /db_xref="InterPro:IPR005665" FT /db_xref="UniProtKB/TrEMBL:Q5L6T8" FT /protein_id="CAH63633.1" FT /translation="MKQRFGRNLSIIICVFGLALYYVLPTCLYYSRPLNKKVDEKEAQQ FT IVRKLTNQVAEVRSDIIPRVSSVLSALKLRGHIVQHPSIPGVVNIHFKDNADAYTFLEN FT MIYGEPTVPIKSSRLYVLGYDNKDGGVVQVTGTLTTALTENDFSFVSYNREDAEPAKEM FT LNAALYLLTSAPAHACSCGYTSIWNTASIARVVQLAENLAVGLDILPHSRTVALLNYFF FT SSEKDYSAFLSRLENVATLSDLSEQQRSVLQSVYQNLKLRAPRWKKAFTRIVDNSLDCS FT ALSPFFSSVDFSPKERKLVFCLDPHVVAKRDELSAEQRLDFDSWLAKEKQRLARKLQQP FT AQESVQGFVFNLSDKEASGKIVLHGQRIYQGIVEHLATLALHRPPAQSCDLIRENFPIH FT CRLPKESDAYGCFIFSPEKSCSHFSKGSIYVVLKGLRSVAAKYEQGAEEDAKIFDKDLH FT NLYNCFAHTDVTPWSLGEDEVLEIRQPLQRYFDVWGENFVVANEGATASLEVRDIRDRL FT ETLNRIEKRRQEEWVRWHEQYRQSSCSMDPQQRIRAAVPHRSAFVENLKLNLRKYSRGD FT SVLRLGIDFIGGKQIRLAFKDHQGKQLTDKEGILKVSDELYARLNRLGVSEVEIRREGD FT NVHLSVPGSTKISSEEILGTSQMTFHVVNEKFSPYSALRYEVQRFLDYLWFTAQSQEAT FT SPEAVNKLASDIFNNPDSRLPSSVQEAVAKLQQEGLAFPKMDNEIASSHLDTTYSMIAI FT EKDVEGKANPLMIVFRNYALDGASLKNIRPEFAVGEGYILNFSVKDTGIAQKAHDVSPR FT ESFHAWTSTYCQEGINGTANGQHSSGRGWRMAVVLDGYVVSDPVLNAPLKDQASVSGKF FT SHREVHRLATDLKSGSMSFVPEVLSEEVISPELGKQQRTQGIISVCLGLAVLIILMSVY FT YKFGGVIASGAVILNLLLIWAALQYLDAPLTLTGLAGIVLAMGMAVDANVLVFERIREE FT YLLSRSLTQSVEAGYKKAFGAIFDSNLTTVLASLLLLVLDTGPIKGFALTLILGIFSSM FT FTALFMTKFFFMVWMNKTQETQLHMMNKFIGIKHDFLKECKRLWMVSGSVIALGCVALG FT FGAWNSVVGMDFKGGYALTLNMADQTSVDVTKFRSTLGDKFKQVGISPRDFRIKTFGSS FT DKIKIYFSQNALTRVQTPERPATDTADPNLSIVMHILSDTGIDISSESLKDVQNFWFKV FT SGQFSNKMRQQAFIALMGALCIILLYVSLRFEWRYAFSAICALIHDLLATCAVLVATHF FT FLQKIQIDLQAVGALMTVLGYSLNNTLIIFDRIREDRQEKLFTPMPILINDALQKTLGR FT TVMTTATTLSVLLILLFVGGGSIFNFAFIMTIGILLGTLSSLYIAPPLLLFMVRKEERK FT QQ" FT misc_feature join(187379..187447,190088..190147,190151..190219, FT 190232..190300,190376..190435,190463..190531, FT 190625..190693,191063..191122,191141..191209, FT 191237..191296,191387..191455,191468..191536) FT /note="12 probable transmembrane helices predicted for FT CAB175 by TMHMM2.0 at aa 9-31, 912-931, 933-955, 960-982, FT 1008-1027, 1037-1059, 1091-1113, 1237-1256, 1263-1285, FT 1295-1314, 1345-1367 and 1372-1394" FT misc_feature 188627..188650 FT /note="PS00030 Eukaryotic putative RNA-binding region RNP-1 FT signature." FT misc_feature 188768..188794 FT /note="PS00037 Myb DNA-binding domain repeat signature 1." FT misc_feature 190655..191548 FT /note="Pfam match to entry PF02355 SecD_SecF, Protein FT export membrane protein , score 405.2, E-value 4.1e-119" FT CDS 191662..193434 FT /transl_table=11 FT /locus_tag="CAB176" FT /product="putative exonuclease" FT /note="Similar to Chlamydia psittaci ssdna-specific FT exonuclease RecJ SWALL:P94659 (EMBL:AF058396) (519 aa) FT fasta scores: E(): 6.2e-178, 90.17% id in 519 aa, and to FT Chlamydia pneumoniae ssdna exonuclease RecJ or cpn0563 or FT cp0187 SWALL:Q9Z7Z0 (EMBL:AE001641) (588 aa) fasta scores: FT E(): 3.2e-159, 72.06% id in 580 aa" FT /db_xref="GOA:Q5L6T7" FT /db_xref="InterPro:IPR004610" FT /db_xref="UniProtKB/TrEMBL:Q5L6T7" FT /protein_id="CAH63634.1" FT /translation="MASKDNSSVSSPIWIYPKHDPALLSFIIKEFHLHPVAAQTFISRG FT FQTIDEVRDFLYVHLSNLHDPELLLDMSKAVQRLLLAKERREHVMVYGDSDVDGITGVA FT LLVEFLRSIEIKVSYCFLGAFLKHYGELSLLIAKMKEEGVTLLITVDCGITAGKEVSDI FT NKQGIDVIVTDHHMPTGKIPHCVATLNPKLRDHAYPNKDLTGVGVAFKLARGVVDALQK FT NHPKLKLDIQHLLDLVSLGTVTDVGTLLGENRTMVRHGIKEIAKGSRLGLHKLCIFSGV FT NPSEVTSTDIVLKISPKLNSLGRLADASKGVELLLTKDPEVADDIIQYLDKINRERQKI FT EADVFHDVQKILKNHPDIVKQAAIVLSSQDWHSRVIPIISARLAKAYNKPVAIISNQGG FT VGKGSLRTIGSFPLLGILQKCSPMFISYGGHDFAAGIIINEDRIEAFRKKFIHLVNSSL FT KKEKAVVTLPLDARADFDEIDHDLLSSIDLFEPFGKGNPVPIFYTIVHQVRYPKLLPGN FT HLKLYLNYGERNLEGIAFGLGDRIGALKASWNQPLELAYTPRLSQSANGGVIHLLVRDF FT HILPLNYKDTTAKF" FT misc_feature 191905..192405 FT /note="Pfam match to entry PF01368 DHH, DHH family , score FT 182.4, E-value 4.9e-52" FT misc_feature 192823..193017 FT /note="Pfam match to entry PF02272 DHHA1, DHHA1 domain , FT score 61.5, E-value 1.2e-15" FT CDS 193885..195033 FT /transl_table=11 FT /locus_tag="CAB177" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydophila caviae hypothetical 43.0 FT kDa protein SWALL:P94660 (EMBL:U41759) (384 aa) fasta FT scores: E(): 5.8e-113, 68.96% id in 377 aa, and to FT Chlamydia pneumoniae chlps 43 kDa protein homolog_1 cpj0562 FT or cp0188 SWALL:Q9JS10 (EMBL:AE002180) (373 aa) fasta FT scores: E(): 2.6e-79, 52.23% id in 358 aa. Only significant FT database matches are to predicted Chlamydiaceae proteins." FT /db_xref="InterPro:IPR008536" FT /db_xref="UniProtKB/TrEMBL:Q5L6T6" FT /protein_id="CAH63635.1" FT /translation="MFSVTQPSVTGNSLCTMNPKPEILIFSSEAARKAYQRRACCPVIY FT KLLDVISAIVKFIIRVILFIPLGLLWVLGKICQNVMLPAAGGAFVVPLCSPRKLLQEAF FT QIQTNGLVNEGYASSVTRVPIQCDDLFIDAMKITFPEARTDRWMLVSLGNSECFENRTV FT LLYDDDWILNIAKQTQSNVLVFNYPGVMHSKGHISPQSLGKSYQACVHYLRDHPEGPKA FT TQVIAYGYSLGTLVQAQALSNEVTDGRDGVRWFVVKDRGPKSVSSIALQWLGQLGVWTI FT KLLNWEINSAKLSESLVCPELFIHGVDCESKLIGDGLFTRDNCFAAPFLDPHAPVLPGR FT KIPVGEYLLDHQGPLDRNTIQQIVEHIKVHFDSEDSTNRNNS" FT misc_feature 194032..194100 FT /note="1 probable transmembrane helix predicted for CAB177 FT by TMHMM2.0 at aa 50-72" FT CDS 195654..196196 FT /transl_table=11 FT /locus_tag="CAB178" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia psittaci early upstream open FT reading frame SWALL:EUO1_CHLPS (SWALL:Q06566) (182 aa) FT fasta scores: E(): 2.7e-64, 96.7% id in 182 aa, and to FT Chlamydia pneumoniae hypothetical protein FT cpn0561/cp0189/cpj0561 cpn0561 or cp0189 or cpj0561 FT SWALL:Y561_CHLPN (SWALL:Q9Z7Z2) (178 aa) fasta scores: E(): FT 1.1e-45, 76.68% id in 163 aa. Only significant full-length FT database matches are to predicted Chlamydiaceae proteins." FT /db_xref="GOA:Q5L6T5" FT /db_xref="InterPro:IPR010093" FT /db_xref="UniProtKB/TrEMBL:Q5L6T5" FT /protein_id="CAH63636.1" FT /translation="MECIQHESCFDVDDREDAQQIKEQEGTEMVSITQAAKLHNVTRQA FT IYVAIKQKKLKASKTTRWEIDLKDLEDYKRNRYSRKKSLYQGELLFDNDKGCYSVNQVA FT DMLGIPVQKVYYATRTGTMRGERKGAAWVISQSEIDRYKSEYLNKQTAKKVKGVAVVEH FT ATAKETVSSETLLFENN" FT misc_feature 195741..196010 FT /note="Predicted helix-turn-helix motif with score FT 1177.000, SD 3.20 at aa 30-119, sequence FT VSITQAAKLHNVTRQAIYVAIKQKKLKASKTTRWEIDLKDLEDYKRNRYSRKKSLYQ FT GELLFDNDKGCYSVNQVADMLGIPVQKVYYATR" FT CDS 196465..197982 FT /transl_table=11 FT /gene="gltX" FT /locus_tag="CAB179" FT /product="putative glutamyl-trna synthetase" FT /EC_number="6.1.1.17" FT /note="Similar to Bacillus subtilis glutamyl-tRNA FT synthetase GltX SWALL:SYE_BACSU (SWALL:P22250) (483 aa) FT fasta scores: E(): 7.2e-59, 39.24% id in 479 aa, and to FT Chlamydia psittaci glutamyl-tRNA synthetase GltX FT SWALL:SYE_CHLPS (SWALL:Q06560) (505 aa) fasta scores: E(): FT 1.1e-204, 91.68% id in 505 aa, and to Chlamydia muridarum FT glutamyl-tRNA synthetase GltX or tc0730 SWALL:SYE_CHLMU FT (SWALL:Q9PJU7) (506 aa) fasta scores: E(): 1.3e-185, 82.01% FT id in 506 aa" FT /db_xref="GOA:Q5L6T4" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6T4" FT /protein_id="CAH63637.1" FT /translation="MAWENVRVRVAPSPTGDPHVGTAYMALFNAIFAKRFNGKMILRIE FT DTDQTRSRDDYEKNIFSALQWCGIQWDEGPDIGGPYGPYRQSERTEIYRKYAELLLKTD FT YAYKCFATPKELEEMRAVATTLGYRGGYDRRYRYLSSEEVDARTREGQPYTIRLKVPLT FT GECVLDDYCKGRVVFPWADVDDQVLIKSDGFPTYHFANVVDDHLMGITHVLRGEEWLSS FT TPKHLLLYQAFGWKAPTFLHMPLLLNPDGTKLSKRKNPTSIFYYRDAGYIKEAFMNFLT FT LMGYSMEGDEEIYSLEKLIANFDPRRIGKSGAVFDTRKLDWMNKHYLTHERSSESLLAK FT LKDWLINDEFFLKILPLCQSRITTLAEFIGFTGFFFSVLPEYSKEELLPTTISQEKAAI FT LLYSYVKYLEKSDLWVKDQFYQGSKWLSSAFQVHHKKVVIPLLYVAITGKKQGLPLFDS FT MELLGKPRTRARLVHAQNLLGGVPKKIQTTIDKVLKEEDLESKIFEF" FT misc_feature 196477..197430 FT /note="Pfam match to entry PF00749 tRNA-synt_1c, tRNA FT synthetases class I (E and Q), catalytic domain , score FT 531.7, E-value 3.3e-157" FT misc_feature 196498..196533 FT /note="PS00178 Aminoacyl-transfer RNA synthetases class-I FT signature." FT CDS 198658..198921 FT /transl_table=11 FT /gene="omlA" FT /locus_tag="CAB180" FT /product="outer membrane lipoprotein" FT /note="Highly similar to previously sequenced Chlamydophila FT abortus small cysteine-rich outer membrane lipoprotein OmlA FT SWALL:Q9AIS8 (EMBL:AF240773) (87 aa) fasta scores: E(): FT 5.2e-30, 98.85% id in 87 aa, and to Chlamydophila caviae FT outer membrane protein 3 Omp3 SWALL:P94663 (EMBL:U41759) FT (88 aa) fasta scores: E(): 8.4e-24, 80.68% id in 88 aa. FT Only significant database matches are to predicted FT Chlamydiaceae proteins." FT /db_xref="GOA:Q5L6T3" FT /db_xref="InterPro:IPR003517" FT /db_xref="UniProtKB/TrEMBL:Q5L6T3" FT /protein_id="CAH63638.1" FT /translation="MKKAVLLATVFCGALGLTSCCRIVDCCFEDPCAPKPCNPCGNKKD FT KGCSPCGTYTPSCSKPCGSECNSGVQGPQAKGCTSLDGRCKQ" FT misc_feature 198658..198705 FT /note="Signal peptide predicted for CAB180 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.682) with cleavage site FT probability 0.524 between residues 16 and 17" FT misc_feature 198685..198717 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 198691..198846 FT /note="Pfam match to entry PF03503 Chlam_OMP3, Chlamydia FT cysteine-rich outer membrane protein 3 , score 106.2, FT E-value 4.3e-29" FT CDS 199087..200760 FT /transl_table=11 FT /gene="cmcB" FT /locus_tag="CAB181" FT /product="membrane protein" FT /note="Previously sequenced as Chlamydophila abortus 60 kDa FT cysteine-rich membrane complex protein CmcB SWALL:Q9AIS7 FT (EMBL:AF240773) (557 aa) fasta scores: E(): 0, 100% id in FT 557 aa, and highly similar to Chlamydia psittaci 60 kDa FT outer membrane protein precursor Omcb or Mmp2 or EnvB FT SWALL:OM6_CHLPS (SWALL:P23701) (557 aa) fasta scores: E(): FT 4.8e-217, 97.3% id in 557 aa, and to Chlamydia pneumoniae FT 60 kDa outer membrane protein precursor Omcb or Omp2 or FT cpn0557 or cp0195 SWALL:OM6_CHLPN (SWALL:P23700) (556 aa) FT fasta scores: E(): 1e-189, 84.38% id in 557 aa. Only FT significant database matches are to predicted Chlamydiaceae FT proteins." FT /db_xref="GOA:Q9AIS7" FT /db_xref="InterPro:IPR001434" FT /db_xref="UniProtKB/Swiss-Prot:Q9AIS7" FT /protein_id="CAH63639.1" FT /translation="MSKLIRRVVTVLALTSMASSFASGKIEAAAAESLATRFIASTENS FT NDNVLQATAKKVRFGRNKNQRQEQKHTGAFCDKEFYPCEGGQCQSVDTTQESCYGKMYC FT VRVNDDCNVEISQAVPEYATVGSPYPIEILAVGKKDCVNVVITQQLPCEVEFVSSDPAT FT TPTSDSKLIWTIDCLGQGEKCKITVWVKPLKEGCCFTAATVCACPELRSYTKCGQPAIC FT IKQEGPECACLRCPVCYKIEVCNTGSAIARNVVVDNPVPDGYTHASGQRVLSFNLGDMR FT PGDSKCFSVEFCPQKRGKITNVATVSYCGGHKCSANVTTVVNEPCVQVNISGADWSYVC FT KPVEYTIVVSNLGDLKLYDVVVEDTVPSGATILEAEGAEICCNKAVWCIKEMCPGETLQ FT FKVVAKAQSPGKFTNQVVVKTNSDCGTCTSCAEATTHWKGLAATHMCVIDTNDPICVGE FT NTVYRICVTNRGSAEDTNVSLILKFSKELQPVSSSGPTKGTITGNTVVFDALPKLGSKE FT SVEFSVTLKGIAPGDARGEAILSSDTLTVPVADTENTHVY" FT misc_feature 199087..199152 FT /note="Signal peptide predicted for CAB181 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.640 between residues 22 and 23" FT misc_feature 199378..199662 FT /note="Pfam match to entry PF03504 Chlam_OMP6, Chlamydia FT cysteine-rich outer membrane protein 6 , score 268.6, FT E-value 5.3e-78" FT CDS 200971..201453 FT /transl_table=11 FT /gene="srp" FT /locus_tag="CAB182" FT /product="putative sulfur-rich membrane protein" FT /note="Previously sequenced as Chlamydophila abortus FT sulfur-rich protein Srp SWALL:Q9AIS6 (EMBL:AF240773) (134 FT aa) fasta scores: E(): 5e-47, 100% id in 128 aa, and FT similar to Chlamydophila caviae hypothetical sulfur-rich FT protein srP SWALL:P94665 (EMBL:U41759) (160 aa) fasta FT scores: E(): 3.6e-46, 81.5% id in 146 aa, and to Chlamydia FT psittaci sulfur-rich protein Srp SWALL:SRP_CHLPS FT (SWALL:P28164) (134 aa) fasta scores: E(): 1.1e-42, 86.61% FT id in 127 aa, and to Chlamydia pneumoniae 15 kDa FT cysteine-rich protein crpa or cpn0556 or cp0196 FT SWALL:Q9Z7Z6 (EMBL:AE001640) (196 aa) fasta scores: E(): FT 2.9e-19, 39.75% id in 161 aa. Only significant database FT matches are to predicted Chlamydiaceae proteins." FT /note="Previously sequenced as Chlamydophila abortus FT sulfur-rich protein srP SWALL:Q9AIS6 (EMBL:AF240773) (134 FT aa) fasta scores: E(): 5e-47, 100% id in 128 aa" FT /db_xref="GOA:Q5L6T1" FT /db_xref="InterPro:IPR008436" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6T1" FT /protein_id="CAH63640.1" FT /translation="MAGESTNSVGNDITSLIQPGLDQVIQDEGVQVTLINSILGWCRIH FT IINPVKSSKIVKSRAFQITMIVLGIILLIAGLALTFVLQGQLGNNAFLFLIPAVIGLVK FT LLATSVFMEKPCTPEKWRLCKRLLATTEDILDDGQINQSNTIFTMDSSESTNAAAS" FT misc_feature join(201151..201219,201238..201306) FT /note="2 probable transmembrane helices predicted for FT CAB182 by TMHMM2.0 at aa 61-83 and 90-112" FT CDS complement(201503..203458) FT /transl_table=11 FT /locus_tag="CAB183" FT /product="putative exported protease" FT /note="Similar to Chlamydia pneumoniae tail-specific FT protease tsp or cpn0555 or cp0197 SWALL:Q9Z7Z7 FT (EMBL:AE001640) (648 aa) fasta scores: E(): 5.6e-177, FT 69.45% id in 645 aa, and to Escherichia coli O157:H7 FT carboxy-terminal protease for penicillin-binding protein 3 FT prc or z2877 or ecs2540 SWALL:Q8XCM5 (EMBL:AE005405) (682 FT aa) fasta scores: E(): 2.4e-31, 30.69% id in 430 aa" FT /db_xref="GOA:Q5L6T0" FT /db_xref="InterPro:IPR004447" FT /db_xref="UniProtKB/TrEMBL:Q5L6T0" FT /protein_id="CAH63641.1" FT /translation="MIKILRLCALVLTCFPSFSFASELLHEEDIRKTVDKLIEYHVDIQ FT DISSDILVRSLLGYSQSFDPHKAYLTEQEINNFIYSADIKKRLLKNYKTNNFSIYQNLN FT RVIKESITRARQWRAEWLSDPEALVKEAASHSLMKKPNQWARSMEEAKERQRALLLSYI FT SVYLSDSAKDRYLGKEASLTQLCARQLEAYENPYLGINDYGEPMLPQEESHHFHVRVVK FT AMAHSLDAHTTYFSKEEALAMRIQLEKGMCGIGVILKEDIDGVIVKEIIPGGPAEKTGE FT LHVDDVIYRVDGRSIENLPFRAVLDCLRGSQGSEVILDVHSKDGNRTVKLKREKISLDD FT RRVDVSYEAYGDGIIGKITLHSFYEGDNQISSEQDLKRAIQSLQEKNLLGLVLDIRENT FT GGFLSQAIKVSGLFMTNGVVVVSRYADGSIKRYRTVSPKKFYDGPLTILVSKSSASAAE FT IVAQTLQDYGVAIIVGDEQTYGKGTIQHQTITADANTEGFFKVTVGKYYSPSGKSTQLR FT GVRSDIHVASRYFAEPLGERYLEHPLPSDSCDNVMNDNLGDLDSHMRPWFQKYYIPNLQ FT KEETVWKEMLPQLTENSRQRLSENKNYKIFLEEVKDPSEAIRPFGSNDLQMEESVNILK FT DMILLRDRKAAVSLGG" FT misc_feature complement(202490..202729) FT /note="Pfam match to entry PF00595 PDZ, PDZ domain (Also FT known as DHR or GLGF) , score 44.8, E-value 1.2e-10" FT misc_feature complement(203396..203458) FT /note="Signal peptide predicted for CAB183 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 21 and 22" FT CDS complement(203586..203864) FT /transl_table=11 FT /locus_tag="CAB184" FT /product="putative membrane protein" FT /note="Similar to Chlamydia pneumoniae ct440 hypothetical FT protein cpn0554 or cpj0554 or cp0198 SWALL:Q9Z7Z8 FT (EMBL:AE001640) (96 aa) fasta scores: E(): 9.2e-15, 64.93% FT id in 77 aa. Only significant database matches are to FT predicted Chlamydiaceae proteins." FT /db_xref="UniProtKB/TrEMBL:Q5L6S9" FT /protein_id="CAH63642.1" FT /translation="MTTEIPVSFLHGHFQQQAYASSRNVVMIALAMVFFVLDLLLSGLS FT FLPQATLPFSGAYFIIGSFLVFIAIGILLINVLCDMKDYLCAPSLVS" FT misc_feature complement(join(203628..203696,203724..203792)) FT /note="2 probable transmembrane helices predicted for FT CAB184 by TMHMM2.0 at aa 25-47 and 57-79" FT CDS 203965..204915 FT /transl_table=11 FT /locus_tag="CAB185" FT /product="putative exported protein" FT /note="Similar to Chlamydia pneumoniae hypothetical protein FT cpn0553 cpn0553 or cpj0553 or cp0199 SWALL:Q9Z7Z9 FT (EMBL:AE001639) (312 aa) fasta scores: E(): 1.2e-44, 41.39% FT id in 302 aa." FT /db_xref="UniProtKB/TrEMBL:Q5L6S8" FT /protein_id="CAH63643.1" FT /translation="MYYLCFFILITSFLTGHASPVASSEVFPWIAPKSLTVLGSPFIDV FT ILETPKEFIEKCDVKVGEIQNINSSDIKKIFLMYRETFPENPITVTRKEPLSLTEDQLA FT NLGCISLLNKPPYLHYGKQAEYGPALQAWDHLRLILRCPNQEDTFCYFLEETPKSLAEL FT SLSSDVGYTLIDSDLLIYGCYIESFLKKARGPNHKILFDLNNPHIVQHYRDRVWSLLPY FT IDVLFLSEESTKSLTGMSNASLGRRLLSHMIPTVFVQNTAEEKAQIYFIQHGKETVYSA FT TQELQQIVLAFLFGYIHDNVIDYCFHAGDLLLEYA" FT misc_feature 203965..204036 FT /note="Signal peptide predicted for CAB185 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.970) with cleavage site FT probability 0.334 between residues 24 and 25" FT CDS 205111..205482 FT /transl_table=11 FT /locus_tag="CAB186" FT /product="putative 30S ribosomal protein s12" FT /note="Similar to Chlamydia trachomatis, and Chlamydia FT muridarum 30S ribosomal protein s12 RpsL or Rs12 or ct439 FT or tc0723 SWALL:RS12_CHLTR (SWALL:O84446) (123 aa) fasta FT scores: E(): 3e-45, 96.74% id in 123 aa, and to Escherichia FT coli RpsL protein SWALL:AAA50988 (EMBL:J01688) (124 aa) FT fasta scores: E(): 1.4e-33, 69.91% id in 123 aa" FT /db_xref="GOA:Q5L6S7" FT /db_xref="InterPro:IPR005679" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6S7" FT /protein_id="CAH63644.1" FT /translation="MPTINQLIRKKRQSSASRKKSPALQKCPQRRGVCLQVKTKTPKKP FT NSALRKVAWVRLSNGQEVIAYIGGEGHNLQEHSIVLVQGGRVKDLPGVRYHIVRGALDC FT AAVKNRKQSRSRYGAKRPK" FT misc_feature 205111..205479 FT /note="Pfam match to entry PF00164 Ribosomal_S12, Ribosomal FT protein S12 , score 263.1, E-value 2.4e-76" FT misc_feature 205237..205260 FT /note="PS00055 Ribosomal protein S12 signature." FT CDS 205526..205999 FT /transl_table=11 FT /gene="rpsG" FT /locus_tag="CAB187" FT /product="30s ribosomal protein s7" FT /note="Similar to Escherichia coli 30S ribosomal protein s7 FT RpsG SWALL:RS7_ECOLI (SWALL:P02359) (178 aa) fasta scores: FT E(): 3e-30, 57.41% id in 155 aa, and to Chlamydia FT trachomatis 30S ribosomal protein RpsG or rs7 or ct438 FT SWALL:RS7_CHLTR (SWALL:P29765) (157 aa) fasta scores: E(): FT 5.1e-53, 87.26% id in 157 aa" FT /db_xref="GOA:Q5L6S6" FT /db_xref="InterPro:IPR005717" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6S6" FT /protein_id="CAH63645.1" FT /translation="MSRRHAAEKKIIPADPIYGSVTLERFINKVMMHGKKSIARKIVYN FT ALERFAKKVGAENVLEAFEEALENAKPLLEVRSRRVGGATYQVPVEVAAGRRDCLAMQW FT IIKFARAKPGKSMEVGLATELVDCFNKQGATIKKREDTHRMAEANKAFAHYKW" FT misc_feature 205526..205996 FT /note="Pfam match to entry PF00177 Ribosomal_S7, Ribosomal FT protein S7p/S5e , score 323.3, E-value 1.8e-94" FT misc_feature 205583..205663 FT /note="PS00052 Ribosomal protein S7 signature." FT misc_feature 205850..205873 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 206041..208125 FT /transl_table=11 FT /locus_tag="CAB188" FT /product="putative elongation factor" FT /note="Similar to Chlamydia pneumoniae elongation factor g FT FusA or cpn0550 or cp0202 SWALL:EFG_CHLPN (SWALL:Q9Z802) FT (694 aa) fasta scores: E(): 0, 93.37% id in 694 aa, and to FT Bacillus subtilis elongation factor g FusA SWALL:EFG_BACSU FT (SWALL:P80868) (691 aa) fasta scores: E(): 1e-147, 58.81% FT id in 692 aa." FT /db_xref="GOA:Q5L6S5" FT /db_xref="InterPro:IPR004161" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6S5" FT /protein_id="CAH63646.1" FT /translation="MSDQEFDLSKIRNIGIMAHIDAGKTTTTERILYYAGRTHKIGEVH FT EGGATMDWMEQEQERGITITSAATTVFWLDCKINIIDTPGHVDFTIEVERSLRVLDGAV FT AVFDAVSGVEPQSETVWRQANKYGVPRIAFVNKMDRMGADYFAAVESMKEKLGANAVAV FT HCPIGSESQFVGMVDLISQKALYFLDETLGAKWEEREIPEELKEKCAELRYALLEELAT FT VDESNEAFMMKVLEDPDAITEEEIHSVMRKGVIENKINPVLCGTAFKNKGVQQLLNVIV FT KWLPSPKDRGTIHGINLKNNEEVYLEPRRDGPLAALAFKIMTDPYVGRITFIRIYSGTL FT KKGSAILNSTKDKKERISRLLEMHANERTDRDEFTVGDIGACVGLKYSVTGDTLCEENQ FT EIVLERIEIPEPVIDMAIEPKSKGDREKLAQALSALSEEDPTFRVTSNEEIGQTIISGM FT GELHLDILRDRMIREFKVEANVGKPQVSYKETITTSSNSETKYVKQSGGRGQYAHVCLE FT IEPNEPGKGNEIVSKIVGGVIPKEYIPAVMKGVEEGLNTGVLAGYGLVDVKVNIVFGSY FT HEVDSSEMAFKICGSMAVKEACRKAAPVILEPIMKIAVITPEDHLGDVIGDLNRRRGKI FT LGQESSRGMAQVNAEVPLSEMFGYTTSLRSLTSGRATSTMEPAFFAKVPQKIQEEIVKK FT " FT misc_feature 206065..206904 FT /note="Pfam match to entry PF00009 GTP_EFTU, Elongation FT factor Tu GTP binding domain , score 372.7, E-value FT 2.5e-109" FT misc_feature 206092..206115 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 206194..206241 FT /note="PS00301 GTP-binding elongation factors signature." FT misc_feature 206986..207225 FT /note="Pfam match to entry PF03144 GTP_EFTU_D2, Elongation FT factor Tu domain 2 , score 91.2, E-value 1.4e-24" FT misc_feature 207487..207846 FT /note="Pfam match to entry PF03764 EFG_IV, Elongation FT factor G, domain IV , score 230.6, E-value 1.5e-66" FT misc_feature 207850..208113 FT /note="Pfam match to entry PF00679 EFG_C, Elongation factor FT G C-terminus , score 147.7, E-value 1.3e-41" FT CDS 208112..208450 FT /transl_table=11 FT /gene="rpsJ" FT /locus_tag="CAB189" FT /product="30S ribosomal protein s10" FT /note="Similar to Chlamydia pneumoniae 30S ribosomal FT protein s10 RpsJ or rs10 or cpn0549 or cp0203 FT SWALL:RS10_CHLPN (SWALL:Q9Z803) (105 aa) fasta scores: E(): FT 1.5e-36, 98.09% id in 105 aa, and to Escherichia coli, and FT Escherichia coli O157:H7 30S ribosomal protein s10 RpsJ FT SWALL:RS10_ECOLI (SWALL:P02364) (103 aa) fasta scores: E(): FT 1.8e-21, 65.65% id in 99 aa" FT /db_xref="GOA:Q5L6S4" FT /db_xref="InterPro:IPR018268" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6S4" FT /protein_id="CAH63647.1" FT /translation="MLRSKEYMKQQKQKIRIRLKGFDQGQLDRSTADIVETAKRTGARV FT AGPIPLPTKREVYTVLRSPHVDKKSREQFEIRTHKRLIDILDPTGKTIDALKMLALPAG FT VDIKIKAA" FT misc_feature 208151..208438 FT /note="Pfam match to entry PF00338 Ribosomal_S10, Ribosomal FT protein S10p/S20e , score 199.5, E-value 3.4e-57" FT misc_feature 208223..208270 FT /note="PS00361 Ribosomal protein S10 signature." FT CDS 208468..209517 FT /transl_table=11 FT /locus_tag="CAB190" FT /product="putative oxidoreductase" FT /note="Similar to Chlamydia pneumoniae sulfite reductase FT CysJ or cpn0548 or cp0204 SWALL:Q9Z804 (EMBL:AE001639) (347 FT aa) fasta scores: E(): 9.2e-79, 56.85% id in 350 aa, and to FT Escherichia coli sulfite reductase [NADPH] flavoprotein FT alpha-component CysJ or b2764 SWALL:CYSJ_ECOLI FT (SWALL:P38038) (598 aa) fasta scores: E(): 2e-19, 30.34% id FT in 346 aa, and to Physarum polycephalum nitric oxide FT synthase form b NosB SWALL:Q968Y5 (EMBL:AF145040) (1046 aa) FT fasta scores: E(): 3.1e-19, 29.85% id in 355 aa" FT /db_xref="GOA:Q5L6S3" FT /db_xref="InterPro:IPR017927" FT /db_xref="UniProtKB/TrEMBL:Q5L6S3" FT /protein_id="CAH63648.1" FT /translation="MHLLEKFKAQRVSLLSRELISCCDPAIASSDAGHVYQLLFNTTGS FT NLSYKVGDSLGVFPKNPVHVVEKILECLSYSPKQLVQSRESSQISLYDFLRCHTNINKV FT PPKLKSFFPDLEETMTFYDAIQKYQPHIPVELFVESVLPLLPRFYSIASAPHPHENQIE FT LLVRLVNYSGEYEQRYGVCSFFLCRELELGKSCHVFVQPTKHFTLAEHVQNQPIVMIGS FT GTGIAPYKAFVQQRIYNNDSGMNILFFGERFEKANFYYQDFWKKAVENELLKLFLAFSR FT DGDRKLYVQDLLKQHADLVLKAYQKGAYFFVCGSKVLGNEVKKTLEDILGKNKLSQLKE FT EHRYVADVY" FT misc_feature 208480..209022 FT /note="Pfam match to entry PF00667 FAD_binding_1, FAD FT binding domain , score -1.7, E-value 1.2e-07" FT misc_feature 209107..209442 FT /note="Pfam match to entry PF00175 NAD_binding_1, FT Oxidoreductase NAD-binding domain , score 59.3, E-value FT 5.5e-15" FT CDS complement(209514..210044) FT /transl_table=11 FT /locus_tag="CAB191" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae FT 2-c-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF FT or cpn0547 or cp0205 SWALL:ISPF_CHLPN (SWALL:Q9Z805) (176 FT aa) fasta scores: E(): 3.4e-53, 76.57% id in 175 aa, and to FT Escherichia coli, and Escherichia coli O157:H7 FT 2-c-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF FT SWALL:ISPF_ECOLI (SWALL:P36663) (159 aa) fasta scores: E(): FT 1.2e-07, 29.11% id in 158 aa" FT /db_xref="GOA:Q5L6S2" FT /db_xref="InterPro:IPR003526" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6S2" FT /protein_id="CAH63649.1" FT /translation="MNAENDSSLPKPQWIYRVGIGQDSHRFLSESSAKPCILAGVIFEN FT SPGFQANSDGDIIFHAICNAISSVTHRIILGEVADELLHTRGITDSSVYLSEAIKSLKS FT NQMISHAAITIEGNRPKFLPKLSAMRQSIASALNIPLGSVGITATSGEGLSDFGCGDGV FT QCFCILTIMEYCG" FT misc_feature complement(209523..209999) FT /note="Pfam match to entry PF02542 YgbB, YgbB family , FT score 272.2, E-value 4.4e-79" FT tRNA 210853..210925 FT /gene="tRNA-Phe" FT /product="transfer RNA-Phe" FT /note="anticodon GAA, Cove score 74.36" FT CDS 211069..211389 FT /transl_table=11 FT /gene="rplU" FT /locus_tag="CAB192" FT /product="putative 50s ribosomal protein l21" FT /note="Similar to Chlamydia trachomatis 50S ribosomal FT protein l21 RplU or rl21 or ct420 SWALL:RL21_CHLTR FT (SWALL:O84425) (107 aa) fasta scores: E(): 4.3e-29, 75.7% FT id in 107 aa, and to Escherichia coli, and Escherichia coli FT O157:H7 50S ribosomal protein l21 RplU SWALL:RL21_ECOLI FT (SWALL:P02422) (103 aa) fasta scores: E(): 2.6e-12, 41.58% FT id in 101 aa" FT /db_xref="GOA:Q5L6S1" FT /db_xref="InterPro:IPR018258" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6S1" FT /protein_id="CAH63650.1" FT /translation="MKSYAIIQTGSKQYQVSEGDIIDVELLDGVSEGQEIVFDQVLFTF FT DGSKVSLGTPTVKNAVVKGELLSRVRGEKVIAYKYKRRKNYHRKIGHRQNYLRVKISNL FT VM" FT misc_feature 211075..211365 FT /note="Pfam match to entry PF00829 Ribosomal_L21p, FT Ribosomal prokaryotic L21 protein , score 138.9, E-value FT 5.9e-39" FT CDS 211420..211668 FT /transl_table=11 FT /gene="epmA" FT /locus_tag="CAB193" FT /product="50s ribosomal protein l27" FT /note="Similar to Chlamydia trachomatis, and Chlamydia FT muridarum 50S ribosomal protein l27 RpmA or rl27 or ct419 FT or tc0700 SWALL:RL27_CHLTR (SWALL:O84424) (83 aa) fasta FT scores: E(): 3.5e-29, 87.8% id in 82 aa, and to Bacillus FT stearothermophilus 50S ribosomal protein l27 RpmA FT SWALL:RL27_BACST (SWALL:P07844) (87 aa) fasta scores: E(): FT 1.2e-14, 59.75% id in 82 aa" FT /db_xref="GOA:Q5L6S0" FT /db_xref="InterPro:IPR018261" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6S0" FT /protein_id="CAH63651.1" FT /translation="MAHKKGQGASRNGRDSESKRLGMKVGAGQRVSTGSILVRQRGTKW FT HPSKNVGRGRDDTLFALIDGIVVTRKTDRTYISVLPE" FT misc_feature 211423..211659 FT /note="Pfam match to entry PF01016 Ribosomal_L27, Ribosomal FT L27 protein , score 144.4, E-value 1.3e-40" FT CDS 211784..212791 FT /transl_table=11 FT /locus_tag="CAB194" FT /product="putative GTP-binding protein" FT /note="Similar to Chlamydia muridarum GTP-binding protein, FT Gtp1/Obg family tc0699 SWALL:Q9PJX7 (EMBL:AE002339) (335 FT aa) fasta scores: E(): 6.9e-98, 78.44% id in 334 aa, and to FT Bacillus subtilis spo0b-associated GTP-binding protein ObG FT SWALL:OBG_BACSU (SWALL:P20964) (428 aa) fasta scores: E(): FT 3.6e-48, 42.81% id in 334 aa" FT /db_xref="GOA:Q5L6R9" FT /db_xref="InterPro:IPR002917" FT /db_xref="UniProtKB/TrEMBL:Q5L6R9" FT /protein_id="CAH63652.1" FT /translation="MFLDQITIELRAGKGGNGVVAWRKEKYLPKGGPYGGNGGVGGSII FT IESATHVYSFESYRNIRFLKAEDGRPGATNNRSGKNGKDLVLIVPEGTLLRDVETKEIL FT YDFAKSGERLVVCRGGKGGKGNTFFKTSTNRAPTKATPGKPGEIRQVELELKLIADIGL FT VGFPNAGKSTLFNTLARTEVKVGAYPFTTLQPVLGLVPCQEKLYQKPWIIADIPGIIEG FT AHQNRGLGLDFLRHIERTRLLLFVIDICGCERSSPEEDLRILMDELVHYREDLADKNRI FT IALNKIDDLLPDERQERLESFQKLFPSETFVLVSGLTGEGVDLLNSLFTNKLAV" FT misc_feature 211826..212653 FT /note="Pfam match to entry PF01018 GTP1_OBG, GTP1/OBG FT family , score 282.5, E-value 3.6e-82" FT misc_feature 212276..212299 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(212689..213582) FT /transl_table=11 FT /locus_tag="CAB195" FT /product="putative transport protein" FT /note="Similar to Chlamydia pneumoniae probable metal FT transport system membrane protein cpn0543 or cp0209 or FT cpj0543 SWALL:Y543_CHLPN (SWALL:Q9Z809) (293 aa) fasta FT scores: E(): 1.9e-82, 78.21% id in 280 aa, and to Listeria FT monocytogenes hydrophobic membrane protein ZurM FT SWALL:Q9XDA5 (EMBL:AF104349) (295 aa) fasta scores: E(): FT 2.6e-17, 23.77% id in 265 aa" FT /db_xref="GOA:Q5L6R8" FT /db_xref="InterPro:IPR001626" FT /db_xref="UniProtKB/TrEMBL:Q5L6R8" FT /protein_id="CAH63653.1" FT /translation="MISFFNHILPSLLLPSLLAALGASIAGGVVGTYIVVKRIVSISGS FT ISHSILGGIGLTLWIQYRLNIEFPPMYGAIIGAIILALCIGKIHLKYQEREDALIAMIW FT SVGMAIGIIFISQLPAFNSELVNFLFGNILWVTTSDLFRLGILDVIVLTMVALCHTRFL FT SLCFDEKYMMLSRYSVQTWYFLLVILAAITIVMLIYIMGVILMLSMLVLPISIACRFSY FT KMVRIMMISVLLNILCSFSGIILAYAVDFPAGPTIAILMGGVYTASLFVKRLLSKSTPS FT PVSPDTNTNVSEGKSF" FT misc_feature complement(212767..213549) FT /note="Pfam match to entry PF00950 ABC-3, ABC 3 transport FT family , score 172.9, E-value 3.5e-49" FT misc_feature complement(join(212770..212823,212842..212910, FT 212968..213036,213094..213162,213220..213288, FT 213313..213372,213400..213468)) FT /note="7 probable transmembrane helices predicted for FT CAB195 by TMHMM2.0 at aa 39-61, 71-90, 99-121, 141-163, FT 183-205, 225-247 and 254-271" FT misc_feature complement(213499..213582) FT /note="Signal peptide predicted for CAB195 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.428 between residues 28 and 29" FT CDS complement(213579..214298) FT /transl_table=11 FT /locus_tag="CAB196" FT /product="putative ATP-binding ABC transport protein" FT /note="Similar to Chlamydia muridarum probable metal FT transport system ATP-binding protein Tc0697 FT SWALL:Y697_CHLMU (SWALL:Q9PJX9) (236 aa) fasta scores: E(): FT 9.5e-55, 64.13% id in 237 aa, and to Listeria monocytogenes FT zinc uptake system ATP-binding protein ZurA FT SWALL:ZURA_LISMO (SWALL:Q9XDA6) (257 aa) fasta scores: E(): FT 6.6e-18, 36.81% id in 220 aa" FT /db_xref="GOA:Q5L6R7" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/TrEMBL:Q5L6R7" FT /protein_id="CAH63654.1" FT /translation="MTVQILVKDLSFRYGPKSSWIINNVSFTVHEGDFIGIIGPNGGGK FT TTLALLLLGLLQPTTGTLNTLPSCVQTSGLTIGWVPQHFSYDFSFPISVKEVVLSGRLS FT FLRWHGKYSKHDHALAEQALTTVDLLHHKDACFSHLSGGQIQRVLLARALASQPKLLIL FT DEPTANIDPENQQRILQILKELNTQCTILMITHDLHHTTSNFNKVFYMSRTLTTLTNMP FT TIPQEFCCDSFEKKADL" FT misc_feature complement(213657..214205) FT /note="Pfam match to entry PF00005 ABC_tran, ABC FT transporter , score 160.1, E-value 2.5e-45" FT misc_feature complement(213837..213881) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(214161..214184) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(214295..215131) FT /transl_table=11 FT /locus_tag="CAB197" FT /product="putative transport poprotein" FT /note="Similar to Chlamydia pneumoniae putative periplasmic FT metal-binding protein precursor cpn0541 or cp0211 or FT cpj0541 SWALL:Y541_CHLPN (SWALL:Q9Z811) (278 aa) fasta FT scores: E(): 1.4e-67, 58.27% id in 278 aa, and to Bacillus FT subtilis manganese-binding lipoprotein MntA precursor FT SWALL:MNTA_BACSU (SWALL:O34385) (306 aa) fasta scores: E(): FT 1.6e-05, 26.69% id in 206 aa" FT /db_xref="GOA:Q5L6R6" FT /db_xref="InterPro:IPR006128" FT /db_xref="UniProtKB/TrEMBL:Q5L6R6" FT /protein_id="CAH63655.1" FT /translation="MYRIFLFLLFFFSCSPIFGDSKSEEKHVLVSIAPYKFLVEQITGN FT TCKVCSIVTNNYDPHTYELSPRHMEKIVRAQLWFRMGENFEKSCEKNISCPQVDLTKNI FT EIISGHTGCTHRFHSFDTHTWLSPKNLKIQVLAITEALCLHFPEHTALYQSNGAKLLET FT LENLDVEIQEITAAAKQRHILVAHGAFAYFCRDYNFFQHVIEKSNHMEPSPKDIVRAAQ FT SIRKHGISSMILLRHAGKRSSAMLAERFHMATVNLDPYEENVINNLKTIATTFANL" FT misc_feature complement(214304..215128) FT /note="Pfam match to entry PF01297 SBP_bac_9, Periplasmic FT solute binding protein family , score 321.0, E-value FT 8.7e-94" FT misc_feature complement(215075..215131) FT /note="Signal peptide predicted for CAB197 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.995) with cleavage site FT probability 0.988 between residues 19 and 20" FT tRNA 215320..215409 FT /gene="tRNA-Ser" FT /product="transfer RNA-Ser" FT /note="anticodon GGA, Cove score 73.25" FT CDS 215725..216363 FT /transl_table=11 FT /gene="thiE" FT /locus_tag="CAB198" FT /product="putative thiamine-phosphate pyrophosphorylase" FT /EC_number="2.5.1.3" FT /note="Similar to Bacillus subtilis thiamine-phosphate FT pyrophosphorylase ThiE or ThiC SWALL:THIE_BACSU FT (SWALL:P39594) (222 aa) fasta scores: E(): 1.4e-14, 34.61% FT id in 182 aa, and to Clostridium acetobutylicum FT thiamine-phosphate pyrophosphorylase ThiE SWALL:Q97LQ9 FT (EMBL:AE007564) (211 aa) fasta scores: E(): 3e-21, 37.07% FT id in 205 aa. No database matches are to predicted FT Chlamydiaceae proteins." FT /db_xref="GOA:Q5L6R5" FT /db_xref="InterPro:IPR003733" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6R5" FT /protein_id="CAH63656.1" FT /translation="MEENFFKLILITNKQQISVEEYLDFVCACVQSGVTSVQLREKELS FT YRELLGFGEALKSILDPLEIPLIVSDSVSVCLDLDATGVHLGQTDGDVIEARELLGSDK FT IIGWNVNTLDQLLNANTLPIDYLGLSAMFATQNKPDATNLWGFSGLEQAVSLCEHPIVA FT IGGIDESNASKVIDAGAAGIAAIGVFHSAQNPSSVTKALREIVDRGLRC" FT misc_feature 215737..216342 FT /note="Pfam match to entry PF02581 TMP-TENI, Thiamine FT monophosphate synthase/TENI , score 150.0, E-value 2.6e-42" FT CDS 216357..217145 FT /transl_table=11 FT /gene="thiM" FT /locus_tag="CAB199" FT /product="putative hydroxyethylthiazole kinase" FT /EC_number="2.7.1.50" FT /note="Similar to Escherichia coli hydroxyethylthiazole FT kinase ThiM SWALL:THIM_ECOLI (SWALL:P76423) (262 aa) fasta FT scores: E(): 1.1e-26, 36.62% id in 243 aa. No database FT matches are to predicted Chlamydiaceae proteins." FT /db_xref="GOA:Q5L6R4" FT /db_xref="InterPro:IPR011144" FT /db_xref="UniProtKB/TrEMBL:Q5L6R4" FT /protein_id="CAH63657.1" FT /translation="MLERMQEALQRLRKERPVILNTTNYVSMDFLANCFLAIGASPIMS FT VSDLELEELIELSSAVYINIGTLDHLFIQRAYRTVDLAVRQNKPVIFDPVAAGATKIRT FT EVSHHLLAHATIVRGNASEILSFGDVTMKTRGVDSTHSTQDAKDVATALAKECLCGCAI FT AVSGAIDFITDGQRHTTVELGDPFMSYVVGMGCSLTGVFAAFRSVIDDSFEATKLGIEY FT FTLCGMLARERCEGPGLFKAYLLDELYASDFSRMRQYYDR" FT misc_feature 216381..217118 FT /note="Pfam match to entry PF02110 HK, Hydroxyethylthiazole FT kinase family , score 230.9, E-value 1.2e-66" FT CDS complement(217265..222631) FT /transl_table=11 FT /gene="pmp1B" FT /locus_tag="CAB200" FT /product="polymorphic outer membrane protein" FT /note="Similar to Chlamydia muridarum probable outer FT membrane protein PmpB precursor or tc0694 SWALL:PMPB_CHLMU FT (SWALL:Q9PJY2) (1672 aa) fasta scores: E(): 3.1e-148, 44.7% FT id in 1859 aa, and to Chlamydia trachomatis probable outer FT membrane protein PmpB precursor or ct413 SWALL:PMPB_CHLTR FT (SWALL:O84418) (1754 aa) fasta scores: E(): 1.5e-132, FT 42.62% id in 1933 aa, and to Chlamydia pneumoniae probable FT outer membrane protein Pmp20 precursor or cpn0540 or cp0212 FT SWALL:PM20_CHLPN (SWALL:Q9Z812) (1723 aa) fasta scores: FT E(): 2.5e-120, 44.59% id in 1868 aa, and to Chlamydia FT psittaci putative polymorphic membrane protein SWALL:Q8VL57 FT (EMBL:AF243416) (601 aa) fasta scores: E(): 1.6e-14, 27.06% FT id in 665 aa, and to Chlamydophila abortus Pomp91b FT precursor SWALL:P71133 (EMBL:U65943) (846 aa) fasta scores: FT E(): 7.6e-12, 26.18% id in 905 aa" FT /db_xref="GOA:Q5L6R3" FT /db_xref="InterPro:IPR006626" FT /db_xref="UniProtKB/TrEMBL:Q5L6R3" FT /protein_id="CAH63658.1" FT /translation="MKWLSATAVFAAVLPSITVFGEPLSKELNSSYRGSGLSASDSASK FT NFTQQTQDDSGTTYTITGDVSFRNFTNIPDPKPRTVEPDPAPAPAPDTQSNTVSSKPKS FT ESKPSLSTGYENTVTQPQETLYHGPDDLHVTSFASHVVEGNQAISDIGKFADEKSHPLS FT FSLSSSSHAVSTSTTDASTSTPAPKGGGAFYNDKAGPITFITHAGNPGSLSCTLIRMTG FT QGGAIYSKGPISFDGLENLTFRDDLSQQAGGALFTDSTLTIRNILDSIEFTNNSARVPI FT PLVPVLPAKSAPGAGVGGLVPPKLKETHLLPRYFSQEIKVQDAESQTSIFPTYTTETAG FT NGGAIFAKGAIVISTYKDMTFRSNSAEFPLIIDVIKEQIDAQKKAASLPSASEKIHASA FT DVAKQQVREAPPVIKGSGGAIFGLDTITIRDGSEDTLFILNTATGAGGAIYGDKDISLN FT NIANLRFQSNSADTRGGAIYAKGNLTIQDSTVLTQFNANSGKTGGGAIYCLGNVTLSNL FT SQVRFGVNKAGNYDLKITIPGKEASTAHVLSSVVEEQKAPVPIEPPLGKGGGIYVEKAF FT TVSHVTSILEFINNQATDHGGGAYVKGALNYSNSHRIQFTTNTSKKSGGGLYCESDVTF FT SNLTGKTLFQGNKAEENGGGICLADTKSLTLSNLENFCLVNNTTSKSGGGAYIPKALSF FT TFSNPDTVSSTTPATVPVFGSAVITGNKAEENGGGVYTTKAALTNLESIDIGQNSAKNG FT AGLCTTSAPAAGVAAIGEEELDFKVDYVVTANVTKNNATESGGGVYGKKGKISRLDHLN FT ITGNSAGKSGGGLYFTEKLTLEGIEISKISDNTAKESGGAIYAKALTCTNFPDGLTVSN FT NKAQVTSTTTSSPQKASIPTAITGGAFSAETLILEKLQGNCTFSGNAAIDNNTASLSSD FT PTDPNIQGGALYAKTSLTLQNSSGSLTFSGNSATTKRSSTTGQVAGGAIYSPTVTIQNC FT SQPISFVGNSALCTPAEQPPAEDPAPKATFGGAIAGTTSITFTGNQALFFKENSADNGS FT AIGCKNGSNGTVTFSDAVFCSFEGNIAKNRGTIYADTLSIPQGYMNFSNNSSANDGSAI FT YFTKKADITAAASILFLDNKVTLAQTSDKQRSQVNNLGAAIYGEGNSTDAELNLTALGG FT SITFKNNQCAPQGKKSNPSFCSITGKVKLTLNAAANQSINFYDAVRTQTVQSSGSNYTT FT LDINKTSSEGNPPKYTGTVLFSSEYHENKSVIPQKVVLHDGTLILGKNTELNVVSFDQK FT AGSSLVMGPGAVLSTQQKTGGSSGATGGIAINNLTIDFSDIVSEDGTATPPALKLGVAP FT AAAAAGARAHVARNNVLPRADVSNPDVTKEKVYLTGTITLIDPAGTFYQNPYLGEDRQI FT ELLKLPESGKVEISDLTLEGDTKPLKGYIGSWTLGPGDQNGTLKANWKFEEYRRWIYIP FT RDNYFYVNSILGSQNSLIAVKQGIVNNMLNNARFDDAAYNNLWLCGIGSFLQKEQGEES FT RSFSYHSRGYSLAIDAKPRPEFILGASFSQVFGHSKSEKAVDNYKHKGSDHSFQGTLYA FT GKSFYLPYRRTQSPQPILLQGVMTYGYMKHDTTTYYPSIHERNLGNWEDLGWLFDIRMI FT LDLKEPSQNSTTRFSFYSEAEYTGVRQKQFTELDYDPRTFDSFAYRNLSIPLGFVFEGA FT LMQYNILMYNKLSLAYVPVIYRNKPKCNYRVNSTGQTGQVYGVIPTRNTGRVEYSSQLY FT LGSYWTLYGTYTVEAGMSSLVQMANCGARMIF" FT misc_feature complement(217886..217909) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(218861..220144) FT /note="Pfam match to entry PF02415 DUF145, Chlamydia FT protein of unknown function , score -87.1, E-value 4.4e-06" FT misc_feature complement(221051..221392) FT /note="Pfam match to entry PF02415 DUF145, Chlamydia FT protein of unknown function , score 26.3, E-value 1.1e-07" FT misc_feature complement(222569..222631) FT /note="Signal peptide predicted for CAB200 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.995 between residues 21 and 22" FT CDS complement(222833..225634) FT /transl_table=11 FT /gene="pmp2A" FT /locus_tag="CAB201" FT /product="polymorphic outer membrane protein" FT /note="Similar to Chlamydia pneumoniae probable outer FT membrane protein Pmp19 precursor or cpn0539 or cp0213 FT SWALL:PM19_CHLPN (SWALL:Q9Z813) (947 aa) fasta scores: E(): FT 2.5e-83, 47.68% id in 950 aa, and to Chlamydia muridarum FT probable outer membrane protein PmpA precursor or tc0693 FT SWALL:PMPA_CHLMU (SWALL:Q9PJY3) (976 aa) fasta scores: E(): FT 1.4e-78, 38.84% id in 937 aa, and to Chlamydia trachomatis FT probable outer membrane protein PmpA precursor or ct412 FT SWALL:PMPA_CHLTR (SWALL:O84417) (975 aa) fasta scores: E(): FT 1e-74, 38.95% id in 937 aa, and to Chlamydophila abortus FT Pomp91a SWALL:P71132 (EMBL:U65942) (847 aa) fasta scores: FT E(): 1.2e-29, 26.44% id in 779 aa, and to Chlamydia FT psittaci PomP90b precursor SWALL:P77792 (EMBL:U65943) (839 FT aa) fasta scores: E(): 1.6e-29, 25.09% id in 837 aa" FT /db_xref="GOA:Q5L6R2" FT /db_xref="InterPro:IPR006626" FT /db_xref="UniProtKB/TrEMBL:Q5L6R2" FT /protein_id="CAH63659.1" FT /translation="MKQTFFWKLVFLSSLAPLTQLSATEVVLPLSGIHTGEDPELFTML FT TTSPQGTQYTLRGEFTLKDFLGLSIHKPGGAFRNLEGNLTFTGSSPLAVLNFTNLQLGS FT QGAGIFSKSLLNFENLKTLRVQNNQSTGGVITSRQDMFFTKNTQLLFENNVSRGPGGAI FT LLTGTQPNRVVFSEQRGGISFINNQAEVVQNISHSGNGGAISSEVAGSTILFDGNQEIL FT FQKNQAKFGGGIYNAQGSVEFSKNRNTITFTENYALESGGVICANLCSINTQSAPVYFR FT KNRADYFGGAIHSHQTIVKNNDAAIFFSENSAEGGGAITASSCHLIASQPIIFSENSAG FT NLGGGAIYLGGPQPQLYLHAQAGDIIFIGNVARVSTKHSSGLHNNAITIKGSPENIRLV FT ANENQSIIFYDPFLATSPSAHPININSGDNIFHCGSVIFSGEKLPLDRQDKTNKTSIFN FT QPVYLHNGTLSITGGAILAVQEFKQFGGVLNLSPGSMLTSYNSLGKDVVISNINFGLDT FT AHSHLPAEIRSGNAVIKLSGSPQIHDPDNIFYDNHSLASQPYQMEIIFKSDKGIHTEKF FT VSEEIAIQQNTYGYQGIWKFHWSEGDSKKHKTLRALWIPTGTFVLNPEKEGSLVPSSVW FT STFSGMRASNDAILDNYLNNNTLFPIKHMCIFGGVVSSILEQNTNHDNHFSTTQAGHNL FT GIKLPFSPNTVVCATFSQLHGSSSQDQIPGKSRSHMLMGTVAAFKNWKALSFRFSISYA FT EESHVMKHQFSKKDITRGAWKNQGIRGCVGLSYAYPKGIRCLKITPFVNLEYTTINQNP FT FIETGYDPRYFTSSRLNNLALPTGVSLELRFFGAKYSLLSEFSMAYIKDLFREDPLATA FT SLILNQHSWKVGGVFMGQEALNLKFRTTFKCKLAKAYLGISTMQREGNSFSGDAFGGIS FT LSF" FT misc_feature complement(222836..223690) FT /note="Pfam match to entry PF03797 Autotransporter, FT Autotransporter beta-domain , score -6.7, E-value 0.00059" FT misc_feature complement(224285..225628) FT /note="Pfam match to entry PF02415 DUF145, Chlamydia FT protein of unknown function , score 30.3, E-value 9.8e-11" FT misc_feature complement(225566..225634) FT /note="Signal peptide predicted for CAB201 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.991) with cleavage site FT probability 0.536 between residues 23 and 24" FT CDS complement(225855..226157) FT /transl_table=11 FT /locus_tag="CAB202" FT /product="putative exported protein" FT /note="Similar to Chlamydia pneumoniae ct814 hypothetical FT protein cpn0538 or cpj0538 or cp0214 SWALL:Q9Z814 FT (EMBL:AE001638) (100 aa) fasta scores: E(): 1.9e-23, 65.34% FT id in 101 aa. Only significant database matches are to FT predicted Chlamydiaceae proteins." FT /db_xref="UniProtKB/TrEMBL:Q5L6R1" FT /protein_id="CAH63660.1" FT /translation="MFRNHKHNKKTCKRWRWLRGVIFGGFIATLLTCLFTPKSGVQLRK FT KLSRVKTSGTKKGKTLFKHSKEHTKAFAQQTKTLAKNLTKEIKDFTKAMIEETKD" FT misc_feature complement(226029..226097) FT /note="1 probable transmembrane helix predicted for CAB202 FT by TMHMM2.0 at aa 21-43" FT misc_feature complement(226038..226157) FT /note="Signal peptide predicted for CAB202 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.970) with cleavage site FT probability 0.413 between residues 40 and 41" FT CDS complement(226182..226535) FT /transl_table=11 FT /locus_tag="CAB203" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae ct814.1 hypothetical FT protein cpn0537 or cpj0537 or cp0215 SWALL:Q9Z815 FT (EMBL:AE001638) (119 aa) fasta scores: E(): 1.2e-18, 51.42% FT id in 105 aa. Only significant full-length database matches FT are to Chlamydiaceae proteins." FT /db_xref="UniProtKB/TrEMBL:Q5L6R0" FT /protein_id="CAH63661.1" FT /translation="MNTYLTGAIIFCCILLSTCMVTVFVLTISLLHRLNKIVKNISKIT FT TILNFEAKILTPLLLGKKLIFGWLRKRNKHLPKDIEDFICEGSKSNWMGKICKGAKWAA FT VAMLVWCIFRKKD" FT CDS complement(226736..228085) FT /transl_table=11 FT /locus_tag="CAB204" FT /product="putative membrane protein" FT /note="Similar to Chlamydia pneumoniae D-ala/gly permease FT daga_1 or cpn0536 or cp0216 SWALL:Q9Z816 (EMBL:AE001638) FT (449 aa) fasta scores: E(): 4.9e-142, 78.22% id in 450 aa" FT /db_xref="GOA:Q5L6Q9" FT /db_xref="InterPro:IPR001463" FT /db_xref="UniProtKB/TrEMBL:Q5L6Q9" FT /protein_id="CAH63662.1" FT /translation="MNAILSLLATFDDFFWSYVAFLMILLLGISFSWKSRFAQFTQFPQ FT FCRLFYQYSQGSSKNKTEERGVHPLKVFFASASGNIGIGNVVGIVTAACIGGPGALFWV FT WVAGILGSIVKYSEVYLGIKFRKVDNEGIYQGGPMYFLDKAYGTKIVPIIVAILLCIYG FT VEIYQFSVIADTISHCWNIPKFLTIFGLLFLVLYAVQGGLQRIGKICACVLPFFLTLYC FT VLSLYILVKEFHQLPSLFSAVFSSAFTGHGAIGGFAGCTVATTIHQGISRAAYSGDIGI FT GFDSIIQSESSVKKPETQAQLSIIGLAIDNLICTLSLLMVLASGSWSLGLDNASQAVEH FT ALATYFPLVKILLPTFFFVTGYTTIISYFLVGKKCAKFLYGKGGSKIYTIYGATILPAF FT CFLSQNTALLVMSVSGALLLCFNLFGVFLMRKEVEFPRADKAIELPTSAK" FT misc_feature complement(226754..227959) FT /note="Pfam match to entry PF01235 Na_Ala_symp, FT Sodium:alanine symporter family , score 18.7, E-value FT 4.6e-13" FT misc_feature complement(join(226802..226870,226883..226951, FT 226970..227035,227114..227182,227300..227368, FT 227396..227455,227489..227542,227570..227638, FT 227717..227785,227813..227881,227987..228043)) FT /note="11 probable transmembrane helices predicted for FT CAB204 by TMHMM2.0 at aa 15-33, 69-91, 101-123, 150-172, FT 182-199, 211-230, 240-262, 302-324, 351-372, 379-401 and FT 406-428" FT misc_feature complement(227420..227458) FT /note="PS01186 EGF-like domain signature 2." FT CDS complement(228151..228648) FT /transl_table=11 FT /locus_tag="CAB205" FT /product="putative lipoprotein signal peptidase" FT /note="Similar to Chlamydia pneumoniae lipoprotein signal FT peptidase LspA or cpn0535 or cp0217 SWALL:LSPA_CHLPN FT (SWALL:Q9Z817) (168 aa) fasta scores: E(): 1.7e-33, 63.56% FT id in 129 aa, and to Escherichia coli lipoprotein signal FT peptidase LspA SWALL:BAB96596 (EMBL:X00776) (164 aa) fasta FT scores: E(): 1.2e-05, 33.63% id in 110 aa" FT /db_xref="GOA:Q5L6Q8" FT /db_xref="InterPro:IPR001872" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6Q8" FT /protein_id="CAH63663.1" FT /translation="MSSRSRSTFLAIACFVLIDWVTKLAVLLYLGNLPDANPILYQYSW FT GKLLFCICPTFNEGAAFGLFAKYKYFLFFIRITIILGILAFLFLRKKTSSPAIRFSLIL FT LCSGAIGNVGDIVFYRHVVDFISIGYKRWFFPTFNFADIFISLGTLIFIYKLYFPTKQK FT IK" FT misc_feature complement(228154..228483) FT /note="Pfam match to entry PF01252 Peptidase_A8, Signal FT peptidase (SPase) II , score 44.0, E-value 5.8e-13" FT misc_feature complement(join(228184..228252,228295..228363, FT 228382..228441)) FT /note="3 probable transmembrane helices predicted for FT CAB205 by TMHMM2.0 at aa 44-63, 70-92 and 107-129" FT CDS complement(228654..229028) FT /transl_table=11 FT /locus_tag="CAB206" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae DnaK suppressor DksA FT or cpn0534 SWALL:Q9Z818 (EMBL:AE001638) (124 aa) fasta FT scores: E(): 6e-41, 92.74% id in 124 aa, and to Chlamydia FT pneumoniae hypothetical protein Cp0218 cp0218 SWALL:Q9K2C0 FT (EMBL:AE002183) (132 aa) fasta scores: E(): 1.6e-40, 91.93% FT id in 124 aa" FT /db_xref="GOA:Q5L6Q7" FT /db_xref="InterPro:IPR020458" FT /db_xref="UniProtKB/TrEMBL:Q5L6Q7" FT /protein_id="CAH63664.1" FT /translation="MPLSEDEIANFKQRLLEMKYKLSHTLEGNAQEVKKPNEATGYSQH FT QADQGTDTFDRTISLEVTTKEYELLRQINRALEKIEESSYGICDVSGEEIPLARLMAIP FT YATMTVKAQSQFEKGLLYGN" FT misc_feature complement(228669..228881) FT /note="Pfam match to entry PF01258 zf_dskA_traR, FT Prokaryotic dksA/traR C4-type zinc finger , score 33.4, FT E-value 3.4e-07" FT CDS complement(229059..229517) FT /transl_table=11 FT /locus_tag="CAB207" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae hypothetical protein FT cpn0533/cp0219/cpj0533 cpn0533 or cp0219 or cpj0533 FT SWALL:Y533_CHLPN (SWALL:Q9Z819) (152 aa) fasta scores: E(): FT 8.5e-56, 98.02% id in 152 aa" FT /db_xref="GOA:Q5L6Q6" FT /db_xref="InterPro:IPR003796" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6Q6" FT /protein_id="CAH63665.1" FT /translation="MQCPFCNHGELKVIDSRNAPEANAIKRRRECLNCGQRFTTFETVE FT LTLQVLKRDGRYENFQESKLINGLNAASSHTRIGQDQVHAIASNVKSELLGKQNREIST FT KEIGELVMKYLKKADMIAYIRFACVYRRFKDVGELMEVLLSATPDMEK" FT misc_feature complement(229104..229376) FT /note="Pfam match to entry PF03477 ATP-cone, ATP cone FT domain , score 108.7, E-value 7.3e-30" FT CDS 229735..230328 FT /transl_table=11 FT /gene="ribC" FT /locus_tag="CAB208" FT /product="riboflavin synthase alpha chain" FT /product="putative riboflavin synthase alpha chain" FT /EC_number="2.5.1.9" FT /note="Similar to Chlamydia pneumoniae riboflavin synthase FT alpha chain RibE or RibC or cpn0532 or cp0220 FT SWALL:RISA_CHLPN (SWALL:Q9Z820) (200 aa) fasta scores: E(): FT 7.4e-42, 60.82% id in 194 aa, and to Escherichia coli FT riboflavin synthase alpha chain RibE or RibC FT SWALL:RISA_ECOLI (SWALL:P29015) (213 aa) fasta scores: E(): FT 1.7e-25, 47.23% id in 199 aa" FT /db_xref="GOA:Q5L6Q5" FT /db_xref="InterPro:IPR001783" FT /db_xref="UniProtKB/TrEMBL:Q5L6Q5" FT /protein_id="CAH63666.1" FT /translation="MFSGIVQELGKIFSIEPRDEGLTIGVEVSSSCISGLEIGCSVAID FT GVCLTVVKLEEGGKMFFDIIPETLACTTIGEKVINDRVNVERSLKVSDEIGGHSVSGHV FT SGVGEIVLIEKNRYYFRVPSSLSVYLFEKGYIAIDGISLTIVTVEEDVCSVGLIPETLF FT RTTLGYKREGSKVNIEPDMATKTQVDTLRRLYLR" FT misc_feature 229741..229998 FT /note="Pfam match to entry PF00677 Lum_binding, Lumazine FT binding domain , score 90.2, E-value 2.6e-24" FT misc_feature 230035..230277 FT /note="Pfam match to entry PF00677 Lum_binding, Lumazine FT binding domain , score 103.0, E-value 3.7e-28" FT misc_feature 230233..230271 FT /note="PS00693 Riboflavin synthase alpha chain family FT signature." FT CDS 230341..231165 FT /transl_table=11 FT /locus_tag="CAB209" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae SAM dependent FT methyltransferase cpn0531 or cpj0531 or cp0221 SWALL:Q9Z821 FT (EMBL:AE001638) (275 aa) fasta scores: E(): 2.5e-78, 63.37% FT id in 273 aa, and to Chlamydia muridarum hypothetical FT protein Tc0684 tc0684 SWALL:Q9PJZ2 (EMBL:AE002337) (275 aa) FT fasta scores: E(): 4.3e-76, 65.09% id in 275 aa" FT /db_xref="UniProtKB/TrEMBL:Q5L6Q4" FT /protein_id="CAH63667.1" FT /translation="MTYKLLDSGEGKKLESFGPITLIRPSCTAIWPKTTPSLWKKAHAE FT YVRSGEEGQWRCAVSIPESWRINLDIVDCTLKLTSFGHIGIFPEHSGFWPELQLSIERH FT SAYRVLNLFAHTGSTSIFAAKCGAKVCHVDASKPAIKWAQKNVENNALPEKRIFWVVED FT VFSFLQKEIRKGKKYDIILLDPPTYARGPNGEIFKIDKDFFSLLVLCSKLLSDCSSYVL FT ITSHTPGHTPAFLQSLAMRAFALDKQFWSSGESFCGLGDQALPSGVFAKWSL" FT CDS 231153..231950 FT /transl_table=11 FT /locus_tag="CAB210" FT /product="putative rRNA methylase" FT /product="4.2.3" FT /note="Similar to Chlamydia pneumoniae rRNA methylase FT Spou_1 or cpn0530 or cp0222 SWALL:Q9Z822 (EMBL:AE001638) FT (265 aa) fasta scores: E(): 7.5e-70, 62.73% id in 263 aa, FT and to Streptomyces viridochromogenes rRNA FT methyltransferase avirB SWALL:Q9F5K6 (EMBL:AF333038) (287 FT aa) fasta scores: E(): 3.9e-15, 29.6% id in 277 aa" FT /db_xref="GOA:Q5L6Q3" FT /db_xref="InterPro:IPR013123" FT /db_xref="UniProtKB/TrEMBL:Q5L6Q3" FT /protein_id="CAH63668.1" FT /translation="MEFIGKNNPKVKEAVALKHNRSRKGPVFLLEGFREIQKALASGYE FT CERIFCGTRISEKEQAFLHTIQKLPLEKVYCTEETLSKLSYKEHHDNFIAVMKKRWWSR FT KEFLAQKRNPLPFYLIIEQVEKPGNVGAILRIADGVGADGVILCDPIVDVYNPNVIRSS FT LGTVFTLPIWSATLDQVQQVILEEKWHAFVTSPRAHTMYFCENYNQPLVLVFGSEKDGL FT TASWLRGNFSKISLPMLGQADSLNLSTAVSAVAYEVVRQRWEA" FT misc_feature 231498..231920 FT /note="Pfam match to entry PF00588 SpoU_methylase, SpoU FT rRNA Methylase family , score 93.9, E-value 2.1e-25" FT CDS 232181..233302 FT /transl_table=11 FT /locus_tag="CAB211" FT /product="putative tetraacyldisaccharide 4'-kinase" FT /note="Similar to Chlamydia pneumoniae FT tetraacyldisaccharide 4'-kinase LpxK or cpn0529 or cp0223 FT SWALL:LPXK_CHLPN (SWALL:Q9Z823) (365 aa) fasta scores: E(): FT 2.3e-86, 60.1% id in 366 aa, and to Francisella novicida FT tetraacyldisaccharide 4'-kinase LpxK or ValB FT SWALL:LPXK_FRANO (SWALL:Q47909) (322 aa) fasta scores: E(): FT 1.1e-18, 30.66% id in 300 aa" FT /db_xref="GOA:Q5L6Q2" FT /db_xref="InterPro:IPR003758" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6Q2" FT /protein_id="CAH63669.1" FT /translation="MSYRSSMKTRFPSPFFIFYRRLTVAISLGKILGWGCFGKLLSWIF FT AATVSFRRKVLSSAPHRVSSTVISVGNIVLGGSGKTPTVLWLAEVLKARGYSCAILSRG FT YKGKCSGQRKLTIVDPEIHDAAYVGDEPLLMAGKLSKGAVFVHKDRRLAAKEVAKNFDI FT LLLDDGFQNNKLHKDVEIVVVNGQDPLGGGAFFPRGRLRDSPKRLQEADFIIVNGSCGL FT ENQKLLHTWCTSPKIFVEPRISQVLWDSRGEKLPLDSLSGLAAGVFCGLGFPQGFLDML FT KRAGVKIVGTYLLPDHAGITKKELHYFSSMTAMRQGEGILCTEKDGIKLGNLIHEPGIL FT PIGKVQMEFDFTHQEDATAALLDKIDRIHNGKR" FT misc_feature 232229..233290 FT /note="Pfam match to entry PF02606 LpxK, FT Tetraacyldisaccharide-1-P 4'-kinase , score 501.1, E-value FT 5.5e-148" FT misc_feature 232250..232318 FT /note="1 probable transmembrane helix predicted for CAB211 FT by TMHMM2.0 at aa 24-46" FT misc_feature 232667..232699 FT /note="PS00136 Serine proteases, subtilase family, aspartic FT acid active site." FT CDS 233306..234556 FT /transl_table=11 FT /locus_tag="CAB212" FT /product="putative symport protein" FT /note="Similar to Chlamydia pneumoniae glutamate symport FT GltT or cpn0528 or cp0224 SWALL:Q9Z824 (EMBL:AE001637) (414 FT aa) fasta scores: E(): 3.2e-130, 83.01% id in 418 aa, and FT to Bacillus caldotenax proton/sodium-glutamate symport FT protein GltT SWALL:GLTT_BACCA (SWALL:P24944) (421 aa) fasta FT scores: E(): 4.9e-45, 34.8% id in 408 aa" FT /db_xref="GOA:Q5L6Q1" FT /db_xref="InterPro:IPR018107" FT /db_xref="UniProtKB/TrEMBL:Q5L6Q1" FT /protein_id="CAH63670.1" FT /translation="MKLWMKIFIGLFVGVTLGLILEDKAIFFKPIGDIFLNLLSMVVYP FT LVFCSMVLGIASISDMKKLGRIGVKSVALYLGTTCLAIVIGLCFAQFFSPGEGCDLSQN FT VTETQIVAPERSSTYFLSLISQIFPSNPVRSFVEGNILQIIVFAIFLGIAMRLSGEQGR FT PVAKFIEGFSEIMLRMINMIMTFAPYGVGASMAWISGSHGLVILWQLGKFVFAYYLACL FT FHAVLVFGGIIRMGCRMSFSKFLSAMMDAISCAISTSSSSATLPVTMRCVSKNLGVSSE FT VSGFVLPLGATVNMNGTAIFQGMAAVFIAQAYNCPLPFSSLLLIVIAATFSAVGSAGVP FT GGGMITLGSVLASVGLPIQGIAVLAGIDRLRDIIGTPMNILGDAVVAVYVASGEGELST FT PLEEKKVLLKDESTETV" FT misc_feature 233312..234484 FT /note="Pfam match to entry PF00375 SDF, FT Sodium:dicarboxylate symporter family , score 388.4, FT E-value 4.5e-114" FT misc_feature join(233324..233368,233411..233479,233516..233584, FT 233708..233776,233834..233902,233945..234004, FT 234239..234307,234335..234403) FT /note="8 probable transmembrane helices predicted for FT CAB212 by TMHMM2.0 at aa 7-21, 36-58, 71-93, 135-157, FT 177-199, 214-233, 312-334 and 344-366" FT CDS 234569..235738 FT /transl_table=11 FT /locus_tag="CAB214" FT /product="putative lipoyl transferase protein" FT /note="Similar to Chlamydia pneumoniae dihydrolipoamide FT succinyltransferase SucB_2 or cpn0527 SWALL:Q9Z825 FT (EMBL:AE001637) (393 aa) fasta scores: E(): 9.4e-111, FT 76.84% id in 393 aa, and to Bacillus subtilis lipoamide FT acyltransferase component of branched-chain alpha-keto acid FT dehydrogenase complex BfmBb SWALL:ODB2_BACSU (SWALL:P37942) FT (424 aa) fasta scores: E(): 1.2e-27, 35.49% id in 417 aa" FT /db_xref="GOA:Q5L6Q0" FT /db_xref="InterPro:IPR004167" FT /db_xref="UniProtKB/TrEMBL:Q5L6Q0" FT /protein_id="CAH63671.1" FT /translation="MFEFRFPKIGESGSGGLVVRWLKQVGENIAKDEPVIEVSTDKIAT FT ELASPKAGKLMRCLVKEGDEVASGEIIALIDTECAVEEEVVVEEPSPHASCPQDSGKNA FT AWFSPAVLSLAHREGISIQQLQQISGTGNDGRVTRRDLENYILEMRQPSCPHIANANEN FT RIPMSPLRRAIASSLSKSSDEVPHASLIVDIDVTDLMNLIAEEKDRFFATHGVKLTITS FT FIIQCLAKALEQFPLLNGSLDGDTIVVKKSINVGVAVNLNKEGVVVPVIHNCQDRGLVS FT IAKTLADLSARSRANKLDPSETQDGSVTVTNFGMTGALIGMPIIRYPEVAILGIGTIQK FT RVVVRDDDSLAIRKMVYVTLTFDHRVLDGIYGSEFLTSLKNRLESVTMS" FT misc_feature 234572..234793 FT /note="Pfam match to entry PF00364 biotin_lipoyl, FT Biotin-requiring enzyme , score 77.5, E-value 1.8e-20" FT misc_feature 234644..234733 FT /note="PS00189 2-oxo acid dehydrogenases acyltransferase FT component lipoyl binding site." FT misc_feature 234881..235006 FT /note="Pfam match to entry PF02817 e3_binding, e3 binding FT domain , score 48.4, E-value 1e-11" FT misc_feature 235043..235732 FT /note="Pfam match to entry PF00198 2-oxoacid_dh, 2-oxo acid FT dehydrogenases acyltransferase (catalytic domain) , score FT 368.1, E-value 6e-108" FT CDS 235769..236758 FT /transl_table=11 FT /locus_tag="CAB215" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia muridarum hypothetical protein FT Tc0679 tc0679 SWALL:Y679_CHLMU (SWALL:Q9PJZ7) (328 aa) FT fasta scores: E(): 3.4e-89, 67.17% id in 329 aa and FT Yersinia pestis arabinose 5-phosphate isomerase kdsd or FT ypo3577 or y0149 or yp3832 SWALL:Q8ZB48 (EMBL:AJ414157) FT (328 aa) fasta scores: E(): 1.3e-32, 35.22% id in 318 aa" FT /db_xref="GOA:Q5L6P9" FT /db_xref="InterPro:IPR001347" FT /db_xref="UniProtKB/TrEMBL:Q5L6P9" FT /protein_id="CAH63672.1" FT /translation="MRSPTTSIDLCQDIVSKQRESLERFFGAFQCEDTWVLAEKILHHQ FT GSIFFSGVGKSGCIARKIVATLQSFGEHALFLASGDLLHGDLGVVRPGDIVCLFSKSGE FT TRELLECIPYLKERGVFIAGITSATYSSLAVLCDHVVILPMIEELDPFNLVPTTSTTCQ FT LLFGDLLAITLLRSRQISLADYGKNHPGGQIGLKVIGKIRDYMFLKTEVPFCSPEDTIA FT DSLDIFSSYGCGCVCIVNEKFEILGIFTDGDLRRALARHGGDILSQRLQDVMTPNPRVI FT SEDADVLLGLQMMETGSPVTILPVVDAKDQKYVVGLLQMHTLAKAGLI" FT misc_feature 235883..236287 FT /note="Pfam match to entry PF01380 SIS, SIS domain , score FT 91.5, E-value 1.1e-24" FT misc_feature 236384..236545 FT /note="Pfam match to entry PF00571 CBS, CBS domain , score FT 47.0, E-value 2.8e-11" FT misc_feature 236582..236752 FT /note="Pfam match to entry PF00571 CBS, CBS domain , score FT 29.0, E-value 7e-06" FT CDS complement(237176..237940) FT /transl_table=11 FT /locus_tag="CAB216" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae ct398 hypothetical FT protein cpn0525 or cpj0525 or cp0228 SWALL:Q9Z827 FT (EMBL:AE001637) (254 aa) fasta scores: E(): 2.5e-64, 86.61% FT id in 254 aa. CDS contains coiled coil region from residues FT 32-124." FT /db_xref="InterPro:IPR003743" FT /db_xref="UniProtKB/TrEMBL:Q5L6P8" FT /protein_id="CAH63673.1" FT /translation="MHEALQSILAIQELDIKMIRLMRVKKEHQKELAKVQSLKSDIRRK FT VQEKELEMENLKNQIKEGENRIQEISDQINKLEGQQAAVKKMDEFNALTQEMTAANKER FT RALEHQLSDLMDKQAGSEDLIVSLKESLTSTENSSFAIEKEICESIKKINEEGRALLQQ FT RSELKETTDPEMFLIYERLLNNKKDRVVVPIDNRVCSGCHIVLPPQHENLVRKKDRLIF FT CEHCSRILYWREADALANDSSAAKRRRRRAAV" FT misc_feature complement(237239..237940) FT /note="Pfam match to entry PF02591 DUF164, Uncharacterized FT ACR, COG1579 , score 376.6, E-value 1.6e-110" FT misc_feature complement(237329..237346) FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT CDS complement(238402..239472) FT /transl_table=11 FT /locus_tag="CAB217" FT /product="putative membrane protein" FT /note="Similar to Chlamydia pneumoniae hypothetical protein FT Cp0229 cp0229 SWALL:Q9K2B8 (EMBL:AE002184) (359 aa) fasta FT scores: E(): 3.3e-29, 33.42% id in 362 aa. Only significant FT database matches are to predicted Chlamydiaceae proteins." FT /db_xref="UniProtKB/TrEMBL:Q5L6P7" FT /protein_id="CAH63674.1" FT /translation="MANTNPLHNQSTTEVSPLFSPREVSTKKWDKILKITSLSILGTLT FT IGTGVAGITLAIVLGMPVLALLAVSSVLLAIVTVGAYKYFQQKADGDWSGALDQSFRTL FT PEPSAQANFLVSPGARLSFHQNKHNPGVKLGIQESTTPGFTIKFLALPRSNTFKTVTSQ FT SGIAFNALLPAAQTLISQNSNQSRLFFRELVSLGQMECRSVPRRHIVKLPFGPTEVRST FT KLSIKDSPTMTHPKKESFPEYIGHVRGPRLEEFSGEDDEVAHDYYNRALFAYENCLEEA FT INQGCSIVSVPLFSSVYELEHRNEQPTPNRNYSWILDCHQLCKKALIKAVDKTARSNPH FT SLRLLVLLQDPFAPLA" FT misc_feature complement(join(239218..239286,239296..239364)) FT /note="2 probable transmembrane helices predicted for FT CAB217 by TMHMM2.0 at aa 37-59 and 63-85" FT CDS complement(239539..239880) FT /transl_table=11 FT /locus_tag="CAB218" FT /product="putative membrane protein" FT /note="Similar to Chlamydophila caviae hypothetical protein FT cca00222 SWALL:Q824D0 (EMBL:AE016994) (123 aa) fasta FT scores: E(): 6.5e-19, 45.45% id in 110 aa. Note the FT differing N-termini. Also weakly similar to Chlamydia FT pneumoniae hypothetical protein cpn0523 cpn0523 or cpj0523 FT or cp0230 SWALL:Q9Z829 (EMBL:AE001637) (110 aa) fasta FT scores: E(): 0.021, 29.88% id in 87 aa" FT /db_xref="UniProtKB/TrEMBL:Q5L6P6" FT /protein_id="CAH63675.1" FT /translation="MLISATTAQSSTCQEPLNLFSKGSVRRSQLTHVVVHCIMQVIILI FT MLITGITVVGCCVHPLFFVFLLAITPVYVSLRLLGGVKLRELFITLRVYPAENQLLNIT FT MLQSKKEEE" FT misc_feature complement(join(239641..239709,239719..239787)) FT /note="2 probable transmembrane helices predicted for FT CAB218 by TMHMM2.0 at aa 32-54 and 58-80" FT CDS complement(239947..240612) FT /transl_table=11 FT /locus_tag="CAB219" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia pneumoniae ct433 hypothetical FT protein cpn0522 or cpj0522 or cp0231 SWALL:Q9Z830 FT (EMBL:AE001637) (223 aa) fasta scores: E(): 1.2e-41, 51.47% FT id in 204 aa. Only significant full-length database matches FT are to Chlamydiaceae proteins." FT /db_xref="GOA:Q5L6P5" FT /db_xref="InterPro:IPR003754" FT /db_xref="UniProtKB/TrEMBL:Q5L6P5" FT /protein_id="CAH63676.1" FT /translation="MTLYLGLNQETANRYHARFVPILEIVPFARSSPQLRYAQRYLEKT FT SHVLLTSPSSTSLFISRMRKKNSKKTLSTKHYLCLGEITARRLTKLLPKAHYSLATVET FT GEGVIPLIASLPKHARILYPHSALSRPVIKDFLQKEHRSFFAYAHYTIRERQFPLSVFK FT QCSRVILTSPSGVRAYAKLFPELPRRIHICQGPITLKEFKKMYNHPGELLQKDSLTES" FT misc_feature complement(239950..240585) FT /note="Pfam match to entry PF02602 HEM4, FT Uroporphyrinogen-III synthase HemD , score 96.5, E-value FT 3.3e-26" FT CDS 240926..242419 FT /transl_table=11 FT /gene="glyA" FT /locus_tag="CAB220" FT /product="putative serine hydroxymethyltransferase" FT /EC_number="2.1.2.1" FT /note="Similar to Chlamydia pneumoniae serine FT hydroxymethyltransferase GlyA or cpn0521 or cp0232 FT SWALL:GLYA_CHLPN (SWALL:Q9Z831) (497 aa) fasta scores: E(): FT 5.9e-168, 82.29% id in 497 aa, and to Bradyrhizobium FT japonicum serine hydroxymethyltransferase GlyA FT SWALL:GLYA_BRAJA (SWALL:P24060) (432 aa) fasta scores: E(): FT 6.5e-45, 40.89% id in 467 aa" FT /db_xref="GOA:Q5L6P4" FT /db_xref="InterPro:IPR019798" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6P4" FT /protein_id="CAH63677.1" FT /translation="MVSLLHKFLENASGKKGQDLASTAYLAALDHLLHSFPSIGKSIID FT ELKSQRSRLKMIASENYASISVQLAMGNLLTDKYCEGSPFKRFYSCCENVDAIEWECVE FT TAKELFGAESAFVQPHSGADANLLAIMAIITQKIQGPAVKRLGYKTINDLTDKEYTELK FT AEIGSHVCLGPSLNSGGHLTHGTVRLNIMSKLMRCVPYEVNKKTECFDYSEIARLVRTY FT KPTVLIAGYSSYSRRLNFSTLKQIADDCGAVLWVDMAHFAGLVAGGVFIEEENPIPFAD FT IITTTTHKTLRGPRGGLVLASKEYDAVINRACPLMMGGPLPHVIAAKAVALKEALTVDF FT KKYAHQVVDNARTLAEHFQKQGLRLLTGGTDNHMLIIDLTSLGISGRIAEDILSSVGIA FT VNRNTIPSDAVGKWDTSGIRLGTPALTTLGMGSDEMEEVANIIVKVLRNITLRRNADDS FT FSKSEGELPENIAEEARARVAGLLSRFPLYPEIDLETLV" FT misc_feature 241019..242251 FT /note="Pfam match to entry PF00464 SHMT, Serine FT hydroxymethyltransferase , score 450.3, E-value 1.1e-132" FT misc_feature 241766..241816 FT /note="PS00096 Serine hydroxymethyltransferase FT pyridoxal-phosphate attachment site." FT CDS 242439..243017 FT /transl_table=11 FT /gene="clpP1" FT /locus_tag="CAB222" FT /product="putative protease proteolytic subunit" FT /EC_number="3.4.21.92" FT /note="Similar to Chlamydia pneumoniae ATP-dependent Clp FT protease proteolytic subunit 1 ClpP1 or cpn0520 or cp0233 FT SWALL:CLP1_CHLPN (SWALL:Q9Z832) (191 aa) fasta scores: E(): FT 8.7e-65, 88.54% id in 192 aa, and to Escherichia coli, and FT Escherichia coli O157:H7 ATP-dependent Clp protease FT proteolytic subunit ClpP SWALL:CLPP_ECOLI (SWALL:P19245) FT (207 aa) fasta scores: E(): 1.9e-23, 43.5% id in 177 aa" FT /db_xref="GOA:Q5L6P3" FT /db_xref="InterPro:IPR018215" FT /db_xref="UniProtKB/Swiss-Prot:Q5L6P3" FT /protein_id="CAH63678.1" FT /translation="MADGEVENKLRDVIERKILDARRVFFSEPVTDKSAADAIKKLWYL FT ELTNPGQPIVFVINSPGGSVDAGFAVWDQIKMMTSPVTTVVTGLAASMGSVLSLCAAPG FT RRFATPHSRIMIHQPSIGGPITGQATDLDIHAREILKTKKRIVDVYLEATGQSREVIEK FT AIDRDTWMTADEAKDFGLLDGILFSFNDL" FT misc_feature 242445..243005 FT /note="Pfam match to entry PF00574 CLP_protease, Clp FT protease , score 207.3, E-value 1.5e-59" FT misc_feature 242754..242795 FT /note="PS00382 Endopeptidase Clp histidine active site." FT CDS 242986..243768 FT /transl_table=11 FT /locus_tag="CAB223" FT /product="putative diaminopimelate epimerase" FT /note="Similar to Chlamydia pneumoniae diaminopimelate FT epimerase DapF or cpn0519 or cp0234 SWALL:DAPF_CHLPN FT (SWALL:Q9Z833) (257 aa) fasta scores: E(): 9.5e-53, 54.82% FT id in 259 aa" FT /db_xref="GOA:Q5L6P2" FT /db_xref="InterPro:IPR001653" FT /db_xref="UniProtKB/TrEMBL:Q5L6P2" FT /protein_id="CAH63679.1" FT /translation="MASSSHSMIYKPSLYSGAGNRFILSETCPDMTILPSLCKEYQVDG FT FLLVLPSSVADAKLIIFNDNGSRPPMCGNGLRCVIAHVSQVGKKDHIFVETDSGIYSGR FT FESWERVIVDMTLPDWHYTRHLLSHTLPGVPKEVFSINTGVPHLVVFVEDVSCVPVDLW FT GSFLRYHEDFVPQGTNVNFIQEISTGEFRIRTYERGLERESLACGTGATAAALVVARRY FT GLSNTQIRIRTWSDVLMKISLDSDRVYLEGHVDKEMPD" FT misc_feature 243019..243348 FT /note="Pfam match to entry PF01678 DAP_epimerase, FT Diaminopimelate epimerase , score 9.4, E-value 7.9e-06" FT misc_feature 243400..243756 FT /note="Pfam match to entry PF01678 DAP_epimerase, FT Diaminopimelate epimerase , score 57.3, E-value 2.2e-14" FT CDS 243900..244892 FT /transl_table=11 FT /locus_tag="CAB224" FT /product="conserved hypothetical protein" FT /note="Similar to several proteins of unknown function FT including: Chlamydia trachomatis hypothetical protein Ct429 FT ct429 SWALL:Y429_CHLTR (SWALL:O84436) (329 aa) fasta FT scores: E(): 4.9e-102, 85.8% id in 331 aa, and to Chlamydia FT pneumoniae protein cpn0518/cp0235/cpj0518 cpn0518 or cp0235 FT or cpj0518 SWALL:Y518_CHLPN (SWALL:Q9Z834) (324 aa) fasta FT scores: E(): 9.4e-104, 88.48% id in 330 aa. Only FT significant full-length database matches are to FT Chlamydiaceae proteins." FT /db_xref="InterPro:IPR005361" FT /db_xref="UniProtKB/TrEMBL:Q5L6P1" FT /protein_id="CAH63680.1" FT /translation="MTTYPVPQNPLLLRALRLMDAFSKSDDERDFYLDRVEGFILYIDL FT DKDQEDLDKIYEELEVNAERYCLIPKLTFYEVKKIMETFINEKIYDIDTKEKFLEILQS FT KNAREQFLECIYDHESELEKWQQFYVERSRIRIIEWLRNNKFHFVFEEDLDFSKHILEQ FT FKIHLFDTKVSKELAQARQLLVNKAKVYYSNEALNPRPKRGRPPKQSAKVESETTISSD FT IYTKVPAVARRFLFLPEITSASSITFSEKFDTEEEFLAHLRGSGRVEDQLNLANLSERF FT ASLKELSAKLGYDSLSTGDFFGDDDDDSDDEKPAPKSSKTSAKRGRKKS" FT misc_feature 243921..244409 FT /note="Pfam match to entry PF03682 UPF0158, Uncharacterised FT protein family (UPF0158) , score 373.8, E-value 1.2e-109" FT CDS complement(244897..245589) FT /transl_table=11 FT /locus_tag="CAB225" FT /product="putative methyltransferase" FT /note="Similar to many including: Bacillus FT stearothermophilus 2-heptaprenyl-1,4-naphthoquinone FT methyltransferase MenH or MenG SWALL:MENH_BACST FT (SWALL:O86169) (234 aa) fasta scores: E(): 1.3e-17, 29.64% FT id in 226 aa, Chlamydia pneumoniae ubiquinone FT methyltransferase UbiE or cpn0515 SWALL:Q9Z837 FT (EMBL:AE001636) (230 aa) fasta scores: E(): 1.2e-48, 55.89% FT id in 229 aa and to Lactobacillus plantarum FT menaquinone/ubiquinone biosynthesis methylase UbiE FT SWALL:CAD65530 (EMBL:AL935262) (237 aa) fasta scores: E(): FT 2.2e-20, 34.37% id in 224 aa" FT /db_xref="GOA:Q5L6P0" FT /db_xref="InterPro:IPR004033" FT /db_xref="UniProtKB/TrEMBL:Q5L6P0" FT /protein_id="CAH63681.1" FT /translation="MLPSTHKPNLQEMFDSLALKYDKINSILSFGMHHVWNRTFSKMLG FT KSDHLIDLCSGTGKVAYRYIRDYPGATATLVDFSANMLHIAKQRYPTAPFTFIEGDIAQ FT LPIREESQTLVSMAYGLRNLPTPKDTLENIHRILKHQGTLGILELTSPPHNHPLYQLHR FT LYLKFIIPWIGKLYSKNRQAYAYLAESIRQLPSDHYLEQLFSSAKFQVRKKRKLAFGAA FT TIWILKKI" FT misc_feature complement(244903..245586) FT /note="Pfam match to entry PF01209 Ubie_methyltran, FT ubiE/COQ5 methyltransferase family , score 79.0, E-value FT 6.5e-21" FT CDS complement(245570..246346) FT /transl_table=11 FT /locus_tag="CAB226" FT /product="conserved hypothetical protein" FT /note="Similar to several proteins of unknown function FT including: Chlamydia pneumoniae ct427 hypothetical protein FT cpn0514 SWALL:Q9Z838 (EMBL:AE001636) (264 aa) fasta scores: FT E(): 3.7e-57, 56.37% id in 259 aa and weakly similar to FT Streptomyces coelicolor hypothetical protein Sco4506 or FT scd35.13 SWALL:Q9L0T8 (EMBL:AL939120) (282 aa) fasta FT scores: E(): 2.4e-06, 23.66% id in 262 aa" FT /db_xref="InterPro:IPR003773" FT /db_xref="UniProtKB/TrEMBL:Q5L6N9" FT /protein_id="CAH63682.1" FT /translation="MSDKFERRLTLGCVSYINAFPFSLELAKRDDILLHTAPPSDLLGC FT LLHGDLQFALTSAVGLFTHPFGTVPGFGIAAYKKILSVNLYAAPTFFTAEKLRIAATKE FT SRSSIMLLHILCRHLWNTPMPEIIQLSSDDVIEKAENYDGLLLIGDTALHHPHIRGFAT FT YDLAQGWYELTQLPFVFAVVLSNHPEGSHTIQEALENSLSHFEAHPEAAIAKAVERTQL FT SEVLLKDYYSLCRYRLREEDYEGIEKFREYHATLYP" FT misc_feature complement(245576..246325) FT /note="Pfam match to entry PF02621 DUF178, Uncharacterized FT ACR, COG1427 , score 337.2, E-value 1.2e-98" FT CDS complement(246319..247431) FT /transl_table=11 FT /locus_tag="CAB227" FT /product="conserved hypothetical protein" FT /note="Similar to many proteins of undefined function FT including: Chlamydia muridarum hypothetical protein Tc0710 FT SWALL:Q9PJW6 (EMBL:AE002339) (369 aa) fasta scores: E(): FT 1.1e-107, 71.11% id in 367 aa, Aquifex aeolicus FT hypothetical protein Aq_648 SWALL:O66888 (EMBL:AE000700) FT (371 aa) fasta scores: E(): 8.1e-40, 37.17% id in 347 aa FT and to Bacillus halodurans hypothetical protein Bh3411 FT SWALL:Q9K7F1 (EMBL:AP001518) (364 aa) fasta scores: E(): FT 2.5e-35, 33.42% id in 356 aa" FT /db_xref="GOA:Q5L6N8" FT /db_xref="InterPro:IPR007197" FT /db_xref="UniProtKB/TrEMBL:Q5L6N8" FT /protein_id="CAH63683.1" FT /translation="MTITPPRILPKNSWMKHVFDKYMERVRLSKEDALRLLLLEDEVDQ FT RALWAFADLVRQKYVGDVVYYSSTFYLYPTNFCEFNCTFCAFYAKPGDPKGWFHTPDQL FT IEKIQELDVPITETHIVGGCFPDCDLDYYTELFSKIKAHFPHLHVKALTGIEYAYLANL FT HNIPVVEVLQTLKNAGLDSIPGGGFDILVDEIRQKLAPGRLSSQEFLEIHRTAHGLDIP FT TNSTMLCYHRERPEDIVTHMDKLRNLQDDTLGFKNFILLKFATENNALGKRLRKLGTSH FT HIPPASIIAVARLFLDNFRNIKALWNYLGIEQALHLLSCGANDLSSTHLGEKVFQMASS FT NQSIKMDIEGMASLITKLGRIPCLTNSKDV" FT CDS complement(247651..249513) FT /transl_table=11 FT /locus_tag="CAB228" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia trachomatis hypothetical FT protein Ct425 SWALL:Y425_CHLTR (SWALL:O84432) (621 aa) FT fasta scores: E(): 1.2e-194, 72.98% id in 622 aa and to FT Chlamydia muridarum hypothetical protein Tc0708 FT SWALL:Y708_CHLMU (SWALL:Q9PJW8) (621 aa) fasta scores: E(): FT 2.1e-194, 73.31% id in 622 aa. Only significant full-length FT database matches are to Chlamydiaceae proteins." FT /db_xref="UniProtKB/TrEMBL:Q5L6N7" FT /protein_id="CAH63684.1" FT /translation="MRRSVCYVNPSVARAGQISTWKFLYSLVDYLPEGTKLKFDLGCQG FT RPIDWEIPSTDLQQPRNTIYLETPKGDVFSAVAIPIPHSPVPQYEFTLPYELEAGETLT FT IVLGPSPDYPQTDEAGNGAQLFTQRRKPFYLYVDPEGKGNYDEPDVFSMDIRGNVLKHI FT QIFTPSYVVKNKRFDITVRFEDEFNNLTNFSPENTRIELSYEHLRENLNWQLFIPETGF FT VILPNLYFNEPGIYRIQLKNLLTNELFVSAPIKCFSDTAPNLMWGLLHGESERVDSEEN FT IEACLRHFRDDCALNFYASSSFENQEGLTPDLWKMITQTIGDFNEEDRFVSLSGVQYCG FT EPGEEGIRQILYIKENKACSKHKDCKISSLSKLYKSASSHEIISIPCFTASKHYGFNFN FT NFYPEFERVVEIYNSWGCSERTEKEGNLFPIKGSDSEVESGTLVEALKRNLRFGFVAGG FT LDDRGIYSKFFDANQQQYTPGLTAIICNKYSRESLIEALYQRHCYATTGPRIIVSFNIT FT SAPMGSELSTTTKPGLAVNRHISGYVAGTAQLKTVEIIRNGEVIKTFFPESSNLDYEYD FT DMDPLSEVILKDPKGKIPFAFYYLRVTQVDQAMAWSSPIWVDLH" FT CDS complement(249580..249948) FT /transl_table=11 FT /locus_tag="CAB229" FT /product="putative regulatory protein" FT /note="Weakly similar to Streptomyces coelicolor anti-sigma FT B factor antagonist RsbV or BldG or sco3549 or sch5.12C FT SWALL:RSBV_STRCO (SWALL:Q9WVX8) (113 aa) fasta scores: E(): FT 2.5e-05, 26.73% id in 101 aa and to Chlamydia pneumoniae FT sigma regulatory factor RsbV_1 or cpn0511 or cp0243 FT SWALL:Q9Z841 (EMBL:AE001636) (116 aa) fasta scores: E(): FT 1.2e-34, 81.03% id in 116 aa" FT /db_xref="GOA:Q5L6N6" FT /db_xref="InterPro:IPR003658" FT /db_xref="UniProtKB/TrEMBL:Q5L6N6" FT /protein_id="CAH63685.1" FT /translation="MGALLIMNNIQKEEHGITAVLHLQGKLDGISSPEVQENISQSLSS FT GIKNIVLDCTNLDYMSSAGIRVLLQSYHQVGKHAGKIVLTCVPKTIEQTLYVTGFLSYF FT KMFNTVQEALQALSKDED" FT misc_feature complement(249610..249924) FT /note="Pfam match to entry PF01740 STAS, STAS domain , FT score 107.3, E-value 1.9e-29" FT CDS |